mRNA_C-linearis_contig8.15818.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15818.1
Unique NamemRNA_C-linearis_contig8.15818.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15818.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.220e-35
Identity = 224/287 (78.05%), Postives = 236/287 (82.23%), Query Frame = 1 
Query:   13 SGLEVKSEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTSVVRLLVE-HGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGAGAGAGRRIPQGLKLDLVNMLERYQLGEYAMARAPMSSTKSLHQMWRDRDTYSNISFSSTPRMAGLGLPAG 870
            S LEVK EESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHT+VV+LLVE H AA     XXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               MVGA    GRRIPQGLK D++N LERYQ+GEY +ARAP+SST+SL Q+WRDRD+  +   +ST R   L   AG
Sbjct:   72 SSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAVDMVGA----GRRIPQGLKFDIINTLERYQMGEYGIARAPLSSTRSLRQIWRDRDSGESTPRASTARAGSLPSGAG 354
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BLAST of mRNA_C-linearis_contig8.15818.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.390e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:  667 GAGRRIPQGLKLDLVNMLERYQLGEYAMARAPMSSTKSLHQMWRDRDTYSNISFSSTPRMAGL 855
            GAGRRIPQGL+ D++N LERYQ+GEYA+ARAP+SST+SL QMWRDRD+  +   +ST R   L
Sbjct:  165 GAGRRIPQGLRFDIINTLERYQMGEYAIARAPLSSTRSLRQMWRDRDSGESTPRASTARAGSL 227
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD62_9PHAE1.220e-3578.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ4_ECTSI6.390e-1665.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3675357..3678971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog2880.D8LLZ4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1013
Cds size1011
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.6224098-CDS-C-linearis_contig8:3675356..36756121622930576.6224098-CDS-C-linearis_contig8:3675356..3675612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3675357..3675612 -
1690881141.2994947-CDS-C-linearis_contig8:3675356..36756121690881141.2994947-CDS-C-linearis_contig8:3675356..3675612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3675357..3675612 -
1622930576.6343768-CDS-C-linearis_contig8:3676082..36761981622930576.6343768-CDS-C-linearis_contig8:3676082..3676198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3676083..3676198 -
1690881141.311638-CDS-C-linearis_contig8:3676082..36761981690881141.311638-CDS-C-linearis_contig8:3676082..3676198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3676083..3676198 -
1622930576.645673-CDS-C-linearis_contig8:3676639..36767621622930576.645673-CDS-C-linearis_contig8:3676639..3676762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3676640..3676762 -
1690881141.322803-CDS-C-linearis_contig8:3676639..36767621690881141.322803-CDS-C-linearis_contig8:3676639..3676762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3676640..3676762 -
1622930576.6628168-CDS-C-linearis_contig8:3677075..36772291622930576.6628168-CDS-C-linearis_contig8:3677075..3677229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677076..3677229 -
1690881141.3413756-CDS-C-linearis_contig8:3677075..36772291690881141.3413756-CDS-C-linearis_contig8:3677075..3677229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677076..3677229 -
1622930576.6789312-CDS-C-linearis_contig8:3677534..36777281622930576.6789312-CDS-C-linearis_contig8:3677534..3677728Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677535..3677728 -
1690881141.3564146-CDS-C-linearis_contig8:3677534..36777281690881141.3564146-CDS-C-linearis_contig8:3677534..3677728Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677535..3677728 -
1622930576.693686-CDS-C-linearis_contig8:3677940..36780421622930576.693686-CDS-C-linearis_contig8:3677940..3678042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677941..3678042 -
1690881141.3682852-CDS-C-linearis_contig8:3677940..36780421690881141.3682852-CDS-C-linearis_contig8:3677940..3678042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3677941..3678042 -
1622930576.7145948-CDS-C-linearis_contig8:3678905..36789711622930576.7145948-CDS-C-linearis_contig8:3678905..3678971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3678906..3678971 -
1690881141.377835-CDS-C-linearis_contig8:3678905..36789711690881141.377835-CDS-C-linearis_contig8:3678905..3678971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3678906..3678971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15818.1prot_C-linearis_contig8.15818.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3675357..3678971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15818.1

>prot_C-linearis_contig8.15818.1 ID=prot_C-linearis_contig8.15818.1|Name=mRNA_C-linearis_contig8.15818.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=337bp
PVFSSGLEVKSEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPV
HLAGAMGHTSVVRLLVEHGAAVDARDGAQCTALHAASEGGHPVVVELLLH
LGADIDARNLKQQTPLHYACGYGQVGAVHQLVVRRASVGARDVKGNTPLH
LACGEGGADVVRLLLAHGSPLDALNHRGRQPLHLACRNGHREVAIELLEH
GADPSARDVDGLQALHMVGAGAGAGRRIPQGLKLDLVNMLERYQLGEYAM
ARAPMSSTKSLHQMWRDRDTYSNISFSSTPRMAGLGLPAGPSSAAAAAAA
AGAAAAAVSASGKVGGRFFGSGGGASTTSFSRKGSSF
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mRNA from alignment at C-linearis_contig8:3675357..3678971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15818.1 ID=mRNA_C-linearis_contig8.15818.1|Name=mRNA_C-linearis_contig8.15818.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3615bp|location=Sequence derived from alignment at C-linearis_contig8:3675357..3678971- (Chordaria linearis ClinC8C monoicous)
CCGGTGTTTTCGTCGGGGTTGGAGGTCAAGTCGGAGGAGAGCGAGATACA
CCACTACGCCCAGGCGGTGAGTCGAGGGCTCGAACCCCGGGGCTGCGGCA
CACAGACGGAGTTCAACAGGAAGTCCCGTCCCGCCCGCGTCATTGACCGT
AAATCCCCTATCCTGCGAAAATGGAGTGTTTGTCTTTTCCGAGTCTCTTG
TTGCACATTTTTTTCCAGAGAGATACTCTGTACCTACCGACCCTACGTCT
ATTGTACGCTGTTTTGTTCCCTGCTTTTTTTTGCCCTTCAAAATTGTGGT
GTCCAAGCGTGTTTCCTCCACGTTCTAGAGAGGGCTTAGTGTATCCTCCA
GCCAACGCCGTGCGAAATAAAAGGCGGGACGACAGGCAGTGTTTTCTACG
ACAAATCAGCAGCTAAGCTAGCCGTTGTCAGTCCCTCGTATGTACCAGTA
CGCATGTAGCGCTACACATCCCCCCTGGTGGTATTAACTTTGTGCTTGAT
TCCTATTTCAGTTGTTCTTTTGTGCTTCTTTCGTGGGCCGCAGCTGCTGG
GGCTGGCCGCCTCTGACGTGTTTCTGTCCTCACGGCATGGTAGCATGGTA
GCGGTGTCTCCTGCTCTCGTTCCAACCATCAACAAAATGACCATCCCACC
ACACTACCGCAACCTGAGGACCCGTTTCCCTGGCGGTTTGTGAACACAAG
ATGCGGGTGTGTGTTTCGTTCTCCCGCTTTCCCCTTTGATGGCTTTCCTT
CTTGCGTGAGCGTGAGCCTGCTGCCCGCCTGCCTGCCTGCTTGCCTGACG
ACTCGTTGCCATACTCAAGTCGTACCTTCAGCGATTGCTAGTTCCTTCCC
CCAATATCAACCGCTTTCTCACTCGCTACCGCTGCCGCTGCCGCCGCCGC
CGCCGCCGTCACTGCTACTGCTACTGCAGGGGGACGTCGAGGAGGTTCGA
AGATGTTTGCTAGCTGGGTTCAACAAAGTCGACGAGGTCGACGAACTCGG
CTGCACTCCGGTGCACTTGGCGGGGGCAATGGTGAGACAGACAAAAGTAA
CAGAGAGACATAATTGATTACAGCACCAGGGGTTAAAATGGCTCATCCTG
GCGTCCAAGATCTATACGCACTGCACGTAGAACATCGCAGCGTCGGGGGG
CGGGCGGGGGGCGCACCTGACCCTCCCCCCCTTCTACGCTATATCTCTCT
GTCCCCCACCCAACCCCGCCCCTTTCATCTATTCTTTTTCCAGGGTCACA
CTAGCGTGGTTCGGCTCCTGGTGGAGCACGGGGCCGCGGTGGACGCGCGA
GACGGCGCCCAGTGCACCGCTCTGCACGCCGCCAGCGAGGGCGGGCACCC
GGTGGTGGTGGAACTCCTGCTCCACCTCGGCGCGGATATCGACGCCAGAA
ACCTGAAGCAGCAGACGCCCCTTCACTACGCTTGCGGGTGAGCCCAGTCG
ATTGCCGGTGTGTAGTCTACCGCATGACGTGTCGTTGCATGGATGGACCT
ATCGCAACCGAAGTTAACGGTTGGATGTGGTTTGGTTGCGTCGTCCGATG
GCGCTAATGTTGTCGGTTTGTTGGATGAGCTTCGAGGGATGAGCGCCCGT
CCGCGATGGCGGCACTGCTGTATCCGCTAGTGCGGGTGGCGTTTGCGCGG
TGTGTGTGTGCGGCATGGAGTGGGCGGCACGGCGTGACGCGTGGTATGGC
GTAACACGACACGATGCGACTCGGCACGACACAACACAACAGGTACGGCC
AGGTGGGGGCCGTGCATCAGCTCGTGGTCCGCCGGGCCTCGGTCGGGGCG
AGGGACGTGAAGGGGAACACACCGTTGCATCTCGCGTGCGGCGAGGGCGG
GGCCGACGTGGTGCGGTTGCTGCTGGCGCACGGCTCGCCTCTGGACGTGA
GTGAGGAGTGACCCCATGCTTGCCTGTTTTTTTTTTTTTGTTCGTGGCGC
TATGTTTTCGTACAGACTACCCGGCTGACAAGAGATACGTCAGTTTGAGA
GTAATCTAGGCTGCGACCCGGGGGCTCCGTGATAAAGATTCGTGGAGGAT
GAGGCGTACGATTCGTGCTCGATTTCTTGGGCGAAAGGGGACGCGTGCCG
AGTATGAGTTACAAAACAGAGAAGGCACGGGGTGAAGTTTGTATTATCCT
TCCACCTACTTCGTTTACTTGTGTACACGCTCGATGCTGCTTGTACTGCT
GCTCTCCAGGCGCTTAACCACAGGGGGAGGCAGCCTTTGCACCTGGCGTG
TCGGAACGGGCACCGGGAGGTTGCGATCGAACTGCTGGAGCACGGGGCTG
ATCCGTCCGCGAGAGACGTTGACGGGCTGCAGGTTTACTTCGTGGAACTC
AGTCACTCAGTCGTTAAAAGCCAGTTGAAACCCCATCAACTCAATCAATC
GTTGGGCCTTTTTGTATTTTTTGTCCTTTTTGTCTTTTTTGTCTTGTTGT
TTGTGCGTGCGATCGATCGATCTGAGACTGAGGCGAACATTCAGTTTGTT
CTTCTCTCCGCCTACTGGGGGGAGTTGGGTGTGCTCTAGGTGAAGAATGA
GTAATCGCCGCCGCCGCCGCCGCCGAGCGGTTTCTTGGCGAGGGTAGGCT
TGTGTCCCTGCCCCGTGCTCCCCGGTGCGGCCATGTGCTGTTGACCACAC
ATACAGCGCCGTGTGTGTTCTGCCTGTTGGGGGGTAGATGTAGCTGCTGC
TGCTGCGCTGTTACTGCTGTTGGCCTGAAAATTGGTGCTTCTCTTTGTTA
CTTGTTGTTGACGCTTGTCAAAGGCTCTTCATATGGTCGGGGCAGGGGCA
GGGGCAGGGCGGCGCATCCCGCAGGGGCTGAAGCTCGACCTCGTCAACAT
GCTCGAGAGGTACCAGTTGGGCGAGTATGCCATGGCCAGGTAAGCACGCG
GCGGCCTGCCCGGTTGGGTTTTTGTCCGCTTTTTGCCTGAGCCATAAAAA
ATAAAAATAAAATATATACCAGGTACCTGGTATGTATTTACATGTATCCA
AAGGCTGGCCTTGTGTACTTGAGGGTGTTGTGTCCGCGGCCCTATGTATC
TAGTATCTAGAACGATTGCCCCCGTGATTATGGGCTCCAGTTGCAGTCCA
CACTCCCAAGTTGTGAAGGTCAATTTTGCTAATTTTGCTTTTTTTTCGGA
AAGCCGAGAGACTGTATCTTGCCGTTACTGGGGTTACTGGGGTGCTTCTT
GGCAAGCGATCGACCGTTACTCGACCGGTTCTTGAACCCCCCCCCCCGTG
TGGTGTACACAACGCGCACAGCAGGGACGGCTTGTGGTCCTCAACTTGTC
TAATGCCCCCCCGGCCCTCACACAAAGCTCGCCGTTCACGCCATGCCGCC
TCTTCCCAGGGCTCCGATGAGCTCCACGAAATCGCTCCACCAGATGTGGA
GGGATCGCGACACCTACAGCAACATCAGCTTCAGCAGCACGCCGCGAATG
GCGGGGCTAGGACTGCCGGCCGGCCCATCGAGCGCGGCGGCGGCGGCGGC
GGCGGCAGGAGCGGCGGCGGCGGCCGTAAGCGCCTCCGGCAAGGTAGGCG
GCAGGTTCTTCGGCAGCGGAGGCGGAGCATCGACGACGTCTTTTTCGAGA
AAAGGTTCTTCCTTC
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Coding sequence (CDS) from alignment at C-linearis_contig8:3675357..3678971-

>mRNA_C-linearis_contig8.15818.1 ID=mRNA_C-linearis_contig8.15818.1|Name=mRNA_C-linearis_contig8.15818.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at C-linearis_contig8:3675357..3678971- (Chordaria linearis ClinC8C monoicous)
CCGGTGTTTTCGTCGGGGTTGGAGGTCAAGTCGGAGGAGAGCGAGATACA
CCACTACGCCCAGGCGCCGGTGTTTTCGTCGGGGTTGGAGGTCAAGTCGG
AGGAGAGCGAGATACACCACTACGCCCAGGCGGGGGACGTCGAGGAGGTT
CGAAGATGTTTGCTAGCTGGGTTCAACAAAGTCGACGAGGTCGACGAACT
CGGCTGCACTCCGGTGCACTTGGCGGGGGCAATGGGGGACGTCGAGGAGG
TTCGAAGATGTTTGCTAGCTGGGTTCAACAAAGTCGACGAGGTCGACGAA
CTCGGCTGCACTCCGGTGCACTTGGCGGGGGCAATGGGTCACACTAGCGT
GGTTCGGCTCCTGGTGGAGCACGGGGCCGCGGTGGACGCGCGAGACGGCG
CCCAGTGCACCGCTCTGCACGCCGCCAGCGAGGGCGGGCACCCGGTGGTG
GTGGAACTCCTGCTCCACCTCGGCGCGGATATCGACGCCAGAAACCTGAA
GCAGCAGACGCCCCTTCACTACGCTTGCGGGGTCACACTAGCGTGGTTCG
GCTCCTGGTGGAGCACGGGGCCGCGGTGGACGCGCGAGACGGCGCCCAGT
GCACCGCTCTGCACGCCGCCAGCGAGGGCGGGCACCCGGTGGTGGTGGAA
CTCCTGCTCCACCTCGGCGCGGATATCGACGCCAGAAACCTGAAGCAGCA
GACGCCCCTTCACTACGCTTGCGGGTACGGCCAGGTGGGGGCCGTGCATC
AGCTCGTGGTCCGCCGGGCCTCGGTCGGGGCGAGGGACGTGAAGGGGAAC
ACACCGTTGCATCTCGCGTGCGGCGAGGGCGGGGCCGACGTGGTGCGGTT
GCTGCTGGCGCACGGCTCGCCTCTGGACGTACGGCCAGGTGGGGGCCGTG
CATCAGCTCGTGGTCCGCCGGGCCTCGGTCGGGGCGAGGGACGTGAAGGG
GAACACACCGTTGCATCTCGCGTGCGGCGAGGGCGGGGCCGACGTGGTGC
GGTTGCTGCTGGCGCACGGCTCGCCTCTGGACGCGCTTAACCACAGGGGG
AGGCAGCCTTTGCACCTGGCGTGTCGGAACGGGCACCGGGAGGTTGCGAT
CGAACTGCTGGAGCACGGGGCTGATCCGTCCGCGAGAGACGTTGACGGGC
TGCAGGCGCTTAACCACAGGGGGAGGCAGCCTTTGCACCTGGCGTGTCGG
AACGGGCACCGGGAGGTTGCGATCGAACTGCTGGAGCACGGGGCTGATCC
GTCCGCGAGAGACGTTGACGGGCTGCAGGCTCTTCATATGGTCGGGGCAG
GGGCAGGGGCAGGGCGGCGCATCCCGCAGGGGCTGAAGCTCGACCTCGTC
AACATGCTCGAGAGGTACCAGTTGGGCGAGTATGCCATGGCCAGGCTCTT
CATATGGTCGGGGCAGGGGCAGGGGCAGGGCGGCGCATCCCGCAGGGGCT
GAAGCTCGACCTCGTCAACATGCTCGAGAGGTACCAGTTGGGCGAGTATG
CCATGGCCAGGGCTCCGATGAGCTCCACGAAATCGCTCCACCAGATGTGG
AGGGATCGCGACACCTACAGCAACATCAGCTTCAGCAGCACGCCGCGAAT
GGCGGGGCTAGGACTGCCGGCCGGCCCATCGAGCGCGGCGGCGGCGGCGG
CGGCGGCAGGAGCGGCGGCGGCGGCCGTAAGCGCCTCCGGCAAGGTAGGC
GGCAGGTTCTTCGGCAGCGGAGGCGGAGCATCGACGACGTCTTTTTCGAG
AAAAGGTTCTTCCTTCGGCTCCGATGAGCTCCACGAAATCGCTCCACCAG
ATGTGGAGGGATCGCGACACCTACAGCAACATCAGCTTCAGCAGCACGCC
GCGAATGGCGGGGCTAGGACTGCCGGCCGGCCCATCGAGCGCGGCGGCGG
CGGCGGCGGCGGCAGGAGCGGCGGCGGCGGCCGTAAGCGCCTCCGGCAAG
GTAGGCGGCAGGTTCTTCGGCAGCGGAGGCGGAGCATCGACGACGTCTTT
TTCGAGAAAAGGTTCTTCCTTC
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