mRNA_C-linearis_contig8.15817.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15817.1
Unique NamemRNA_C-linearis_contig8.15817.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15817.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.040e-15
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:   37 SPRWMVGAQVAGRLEEMRARELAASLRSKVQENEAMKRYLESVKEEMRMLQRKVS 201
            SPRW VGA VAGRLE MRAREL ASLR+KVQENEAMKRY+ESV EEMR LQ+K+S
Sbjct:  338 SPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKIS 392
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BLAST of mRNA_C-linearis_contig8.15817.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.290e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   25 GGGHSPRWMVGAQVAGRLEEMRARELAASLRSKVQENEAMKRYLESV 165
            GGG SPRW VGA VAGRLE MRAREL ASLR+KVQENEAMKRY+ESV
Sbjct:  449 GGGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESV 495
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLZ4_ECTSI5.040e-1581.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD62_9PHAE2.290e-1285.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3672126..3675236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D8LLZ4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930503.4204214-CDS-C-linearis_contig8:3672125..36725391622930503.4204214-CDS-C-linearis_contig8:3672125..3672539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3672126..3672539 -
1690881103.1738896-CDS-C-linearis_contig8:3672125..36725391690881103.1738896-CDS-C-linearis_contig8:3672125..3672539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3672126..3672539 -
1622930503.4345922-CDS-C-linearis_contig8:3675068..36752361622930503.4345922-CDS-C-linearis_contig8:3675068..3675236Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3675069..3675236 -
1690881103.18444-CDS-C-linearis_contig8:3675068..36752361690881103.18444-CDS-C-linearis_contig8:3675068..3675236Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3675069..3675236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15817.1prot_C-linearis_contig8.15817.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3672126..3675236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15817.1

>prot_C-linearis_contig8.15817.1 ID=prot_C-linearis_contig8.15817.1|Name=mRNA_C-linearis_contig8.15817.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=194bp
MGGMHGVGGGGHSPRWMVGAQVAGRLEEMRARELAASLRSKVQENEAMKR
YLESVKEEMRMLQRKVSGNSSPSSSSPPPSIPSSGAGGHRDARSTAGAGA
ESPSAATAAASTSMAEQFSIAEMLARGMYGSDGIGGGGGGGSDVLDGSAS
YLQTATPSTGVKAGESAGTAGAEPQGGDVLLEEGAAAEGAADAT
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mRNA from alignment at C-linearis_contig8:3672126..3675236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15817.1 ID=mRNA_C-linearis_contig8.15817.1|Name=mRNA_C-linearis_contig8.15817.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3111bp|location=Sequence derived from alignment at C-linearis_contig8:3672126..3675236- (Chordaria linearis ClinC8C monoicous)
ATGGGAGGTATGCACGGGGTCGGCGGCGGCGGGCACAGCCCCCGATGGAT
GGTGGGCGCCCAGGTGGCCGGGCGGTTGGAGGAGATGAGGGCGCGAGAGC
TCGCGGCGAGCCTCCGGTCGAAGGTGCAGGAGAACGAGGCCATGAAGCGG
TACCTCGAGTCTGTCAAGGTGCGTGTTTGCCATGATTGATGTCGATGTCC
ACATCAGAGCTATGCAGGGGGGTATTCCACCGTGTATGGTATGGCGTCTC
TCATTTTTATCACTCAAATTGGTGCGTGTTTTTGCGATTGAGCAAGTTGG
TGGGATGGGCCCCGAGCCTTCCGTTGAAGGCGTTCCTCGTGCATGCATAC
GTACACGATGCCTGAGCGAGTGGATCGTTCCGCGAGGGTCTGTGGTAAAA
GCCTTACGGTGGGTTTCTATCTCCAAGAAATTGGTTGTAATACCACAGCT
TTACGGTGGGTTTCTCCTCGATGTATTTGCTGTTGACCCGGCAGAGCGTT
GCAGGGGAGCTTTACGACGTTTTCCCAGTTTTAGGTGTTTTTCTTCTCCA
CCTATCCCATATTACGTCACTGACTCTGTATTTACCTGCTAATCCACCAC
TTAGGGATTTGTCTCTTTGAGGGGAGGTTCTTTCTTTGATGCCGTTTTGA
TTTTATAAAAGTGTCCGAGAATGTGCCGACACCAAGCGTGCGTCGACCTT
CTCTCCCATTTACACCTTAATGGTACACGAGATTGTCTTCGCAGGGTGCG
TTGAGAGGATGAACAAGTGCCAATTTTACCATGTTTTGGCTCGTGGCATG
GAGGAACTTTGAAGGGGTCCCTAAGCAGGGGCCCCGAAGTTGGTACTATT
AATAGTGTTTTTTTTTAGGCGAACGATTTTTTTGGGGATATCTGTTTGGT
TTGGGCATTGTCAAAAAATGACCGCGCTTGTCCTGTTCGCGGCGACCCTC
AGCGTGCTCAGCGTGCTGCTGTGCTATGATTCCAGTATACCTTATAGGCA
ACAGTTTGCATTTACTTCTCTACAGGTTTTTGATAGGCAGCGCTTGTTTT
GTAGCGGTCGGAAACGCGGAGGTTTTCCTCTCCAAAGGGCAAAAAAAAAT
CGTTATTAAAAAAAAAAGACTAGTGTAAAACTCACATCCAGCTGACAGTT
TGGTGTTCAGGGGATCGGAAAATATAGCTCGCCCCCTCACAAGCGAGAAG
AGCGCAAGGCGATTGAAGTTTCTACTGACATGGGTGTAGGAGCCGTCGCA
TGTCCTGGACAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGTAGTAGGTAGCAGGTAGCAGGAGCCACGCT
TGAGAGATTTTCGTGAGCACGAGCCAAATATAGTATTCGGTGGGCCTTTT
CGGGGTGTTTTGCGGCGATTTTTCTTCAATTAATGCGCCGGGCCCTTCCT
CACACCGTGGTTTTTGCCCCAATCGAAAAACGTACTTGACGCGAATGTAT
TGTAGCCCGGCTGTTTTGGGAGCGTATGGAGTTGTCGAATGGGTGCACCT
TGTTACAGGATTCGTTCCACGGTGCGCACCCATATTCCAGATCTCCCCAT
ATCTTTCAACGGGTTTTAGACCTTTCCTGTCAGTCTCATTGCCCGGGAAA
GGGCCCGAGTTGGAGTCGAATAGCCCAGAATTGTGAGAGCGCTCTTGCCC
CCCCCCTGTATTCAGCTCGGACCAGCTCGTACAAGCTGGTTCACGGATAC
TAATACAAGCGGGTCTTCATCTACAACAACGGGAGATTGCCTACCGTGAC
CTTGTAACACATGGCGTCGTCGCCTTTTACAAACCGAAGGCTCTCCTGAT
GAGATTTGTGATCGCGAGACAGCACTCAGTGCAGCTCTTTTCGCCCTTCT
GTCTTTTGGCTCCAAGCTCGTTTTTTTTTTTTTTTTCTCGCCCATTATTG
TTTTTTCGTAGCCTGCCTCCTCCTCTTCACTACAACTAGCTAGGCTAACA
TCCGGGGTCACACAGGAGGAGATGTCTCCACCTAACTCCTGCGATCCAAG
CTCGGTGGTATGTCTCAACACGTCGACGGTGGACGTTCTTCACCGCTCCG
CGGGTCGACCTCACCCACACTCTCCTTTGCGAGGGCAGGAGTTCGTCACA
AGACACCAGCAGTTCGCAGCGAAATGGGTAGTTTGAAACTGGCTAGAAAA
ACTCCGCATTTTTGGCCGCAAAAAACACCGAGCTCCTCTGATTTTTCGAA
GAAAGACCACGCCGATCGGAACTCCTTCACTAACTTCAAGTGAGGCTCCG
TGATGTTCAGCCTGGGGGTATAATATTTGCGCCGAAAAGGCCTACTACTG
ATGAATGGGGGGTGCTTACGGACCCCTTGAGGGCCGTGCAAAAGAGTGCG
GGGCACTATTCGGGGGAGGCGTGGTGTGGCGTGGTGTTTTTGAGAAAACG
ACATAGTAAGAGAGAGATGCGACGAGCTGTTGACGGCATAATTTTGCGCA
GTGCACGGTACACGGGACGCCTTTACCTGGAAACTTGTTCATCCAATCCA
ACCTACAATATGTACCTCATGTTGTGCCTGCATTCGATCGCTGACCAACC
AACGCAACACGGCACCGATCTCCGATACAACTGACGAACCCGAACGAACC
GACCGGTCGTTCGTCCCAAACGCCGCTCGCTTCGCCGAAAATCGCAGGAG
GAAATGCGGATGCTCCAGCGGAAGGTGTCGGGTAACTCTTCGCCGTCTTC
GTCGTCCCCGCCGCCGTCAATCCCCTCCTCCGGGGCGGGCGGCCACCGGG
ACGCCAGGTCGACAGCCGGCGCCGGCGCCGAGTCGCCGTCGGCGGCGACA
GCGGCGGCGAGCACAAGCATGGCGGAGCAGTTTTCGATCGCCGAGATGCT
CGCCCGCGGCATGTACGGCAGCGACGGCATCGGAGGCGGCGGCGGCGGCG
GCAGTGACGTCTTGGACGGGTCTGCCTCTTATCTCCAAACCGCGACCCCG
TCCACCGGCGTAAAAGCTGGAGAGAGCGCGGGAACGGCGGGTGCCGAGCC
TCAAGGTGGAGATGTACTGTTGGAGGAGGGGGCGGCGGCCGAGGGGGCGG
CTGATGCGACG
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Coding sequence (CDS) from alignment at C-linearis_contig8:3672126..3675236-

>mRNA_C-linearis_contig8.15817.1 ID=mRNA_C-linearis_contig8.15817.1|Name=mRNA_C-linearis_contig8.15817.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at C-linearis_contig8:3672126..3675236- (Chordaria linearis ClinC8C monoicous)
ATGGGAGGTATGCACGGGGTCGGCGGCGGCGGGCACAGCCCCCGATGGAT
GGTGGGCGCCCAGGTGGCCGGGCGGTTGGAGGAGATGAGGGCGCGAGAGC
TCGCGGCGAGCCTCCGGTCGAAGGTGCAGGAGAACGAGGCCATGAAGCGG
TACCTCGAGTCTGTCAAGATGGGAGGTATGCACGGGGTCGGCGGCGGCGG
GCACAGCCCCCGATGGATGGTGGGCGCCCAGGTGGCCGGGCGGTTGGAGG
AGATGAGGGCGCGAGAGCTCGCGGCGAGCCTCCGGTCGAAGGTGCAGGAG
AACGAGGCCATGAAGCGGTACCTCGAGTCTGTCAAGGAGGAAATGCGGAT
GCTCCAGCGGAAGGTGTCGGGTAACTCTTCGCCGTCTTCGTCGTCCCCGC
CGCCGTCAATCCCCTCCTCCGGGGCGGGCGGCCACCGGGACGCCAGGTCG
ACAGCCGGCGCCGGCGCCGAGTCGCCGTCGGCGGCGACAGCGGCGGCGAG
CACAAGCATGGCGGAGCAGTTTTCGATCGCCGAGATGCTCGCCCGCGGCA
TGTACGGCAGCGACGGCATCGGAGGCGGCGGCGGCGGCGGCAGTGACGTC
TTGGACGGGTCTGCCTCTTATCTCCAAACCGCGACCCCGTCCACCGGCGT
AAAAGCTGGAGAGAGCGCGGGAACGGCGGGTGCCGAGCCTCAAGGTGGAG
ATGTACTGTTGGAGGAGGGGGCGGCGGCCGAGGGGGCGGCTGATGCGACG
GAGGAAATGCGGATGCTCCAGCGGAAGGTGTCGGGTAACTCTTCGCCGTC
TTCGTCGTCCCCGCCGCCGTCAATCCCCTCCTCCGGGGCGGGCGGCCACC
GGGACGCCAGGTCGACAGCCGGCGCCGGCGCCGAGTCGCCGTCGGCGGCG
ACAGCGGCGGCGAGCACAAGCATGGCGGAGCAGTTTTCGATCGCCGAGAT
GCTCGCCCGCGGCATGTACGGCAGCGACGGCATCGGAGGCGGCGGCGGCG
GCGGCAGTGACGTCTTGGACGGGTCTGCCTCTTATCTCCAAACCGCGACC
CCGTCCACCGGCGTAAAAGCTGGAGAGAGCGCGGGAACGGCGGGTGCCGA
GCCTCAAGGTGGAGATGTACTGTTGGAGGAGGGGGCGGCGGCCGAGGGGG
CGGCTGATGCGACG
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