mRNA_C-linearis_contig8.15812.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15812.1
Unique NamemRNA_C-linearis_contig8.15812.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.460e-119
Identity = 213/351 (60.68%), Postives = 252/351 (71.79%), Query Frame = 3
Query:  417 VPVRSVPTRAPRVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSS-----------------GRGGM-SRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEY----ARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFWAAR 1403
            VP+ S PTRAPRVYL+ +NLHVG+ V+LT EQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAV++SS                 GRGG   R +RS +  DK VELRV+ L RRQP    G   E +DV AP++EL+FAPIRKQRLK++VEK VE+G SRLTPVLTARTQKG+VSD+  L +LG VTAVEAAEQCERM VP V  +PV L S L+ +E R+S     S      +R  +    LP+ +FVCKERD DA P+LEALAEY    + +R+ D  +S DG       +NA  AFL+GPEGGFDPDE+ A+A YPFV FVSLG  VLRAETAA+YALSSWSAFWA+R
Sbjct:  134 VPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVA-SPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLS--LPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGS------RNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWASR 475          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 2.850e-98
Identity = 180/310 (58.06%), Postives = 215/310 (69.35%), Query Frame = 3
Query:  534 MRLRDGSPVRVFDGVNGEFLAAVSSSS---------------GRGGM-SRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARD-----RQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFWAA 1400
            MRLRDG+PVRVFDGVNGEFLAAV++SS               GRGG   R +RS    +K +ELRV+ L RRQP    G G E +D+ AP++EL+FAPIRKQRLK++VEK VE+G SRLTPVLTARTQKG+VSD+  L +LG VTAVEAAEQCERM VP +  +PV L S L+ +E R S     S      +R+ +  R LP+ +FVCKERD DA P+LEALAEY +      RQD   SS D        +NA  AFL+GPEGGFDPDE+  +A YPFV FVSLG  VLRAETAA+YALSSWSAFWA+
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMA-SPVTLASYLRSLELRHSSCDGSSIVGLARDRDGD--RSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDN-------RNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 300          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.560e-42
Identity = 115/289 (39.79%), Postives = 154/289 (53.29%), Query Frame = 3
Query:  534 MRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFWAA 1400
            MRLRDGS VR F+G +GE+L  +S + G        +   S   ++ L+V+  +R Q + S          A  DV L+ API++QR+KL+VEK  ELGV+ + PVLTA TQ+    D++   +L L  A+EAAEQCER+++P +   P PL  LL    S      R                     +FVC+ER   + P+LEALA  +  R             G     A  AFLVGPEGGF  DE   +A  P++  VSLG  VLRAETAA+YALS +S+F AA
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDS---------CADLDVWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRL-LPIAIEAAEQCERLSLPHLH-PPAPLPELLARWHSEPHTRAR--------------------QLFVCQERSPQSPPLLEALAAASAAR-------------GVPSSAAPAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAA 243          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: UPI0010745A2F (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Terasakiella sp. SH-1 TaxID=2560057 RepID=UPI0010745A2F)

HSP 1 Score: 136 bits (342), Expect = 4.490e-33
Identity = 102/313 (32.59%), Postives = 152/313 (48.56%), Query Frame = 3
Query:  450 RVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSA 1388
            R+Y+ D++L VG   +L+++Q  Y+ +VMRL+ G  V VF+G +GE+L  +SS+                 K+  +++   IR Q              + PD+ L+FAPI+KQRL  ++EK  ELGVS   PV+T RT    +   +   +      +EA+EQCER+ +P V    V L+ L++D    R+                         +FV  E    AKPILE L E+A                    +    A LVGPEGGFDP E+  +A    V  +S+GP +LRA+TAA+ A+S W +
Sbjct:    3 RLYI-DTSLSVGLSQDLSSDQAHYVNNVMRLKVGDEVAVFNGQDGEWLGQISSAR---------------KKNCTIQLIEKIREQD-------------SCPDLMLVFAPIKKQRLDFIMEKATELGVSDFQPVITQRTIASKIRSDRLCAQT-----IEASEQCERLNIPVVHEA-VSLVQLVKDWPQERT-------------------------LFVLNEHGG-AKPILEGLQEFA------------------GKEIGPCAILVGPEGGFDPSELDLLAKLQNVVPLSIGPRILRADTAALAAISCWQS 236          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A2E4XSR1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XSR1_9PROT)

HSP 1 Score: 136 bits (342), Expect = 4.980e-33
Identity = 109/313 (34.82%), Postives = 150/313 (47.92%), Query Frame = 3
Query:  450 RVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSA 1388
            R+Y+ D  L  G+ V+L+  Q+ YL  V+RL  G+ V +F+G +GE+ A + +     G                L V++ IR Q             +  PD+ L+FAPI++ RL ++V+K VELGVSRL PVLT RT+   ++  +    L     +EAAEQCERM +P +   P P+L +L D                       TGR L     VC ER   A PI + L        +D T   D             A L GPEGGF   E+ A     F+ FVSLGP +LRAETAA+ A++ W A
Sbjct:   10 RLYV-DQALDAGRSVDLSANQSHYLKHVLRLGPGAEVALFNGKDGEWRARIETIRRNAGS---------------LGVETQIRPQ-------------ITEPDLWLLFAPIKRARLDMLVQKAVELGVSRLVPVLTERTEVKRLNADRHRSNL-----IEAAEQCERMTLPEIV-EPRPILDVLSDFP---------------------TGRRL----LVCAERGH-AAPINQIL--------EDDTGEAD-----------RCAILCGPEGGFAETELDAFQKLSFIRFVSLGPRILRAETAAISAVTCWQA 242          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: W7TJZ1_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ1_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.040e-32
Identity = 108/329 (32.83%), Postives = 164/329 (49.85%), Query Frame = 3
Query:  423 VRSVPTRAPRVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKL--GLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFWAAR 1403
            V S   R+PR+Y+ ++ L     V ++T+Q  YL+ VMRLR G+ VRVF+  +GE++A V+  +    M   R  G S  K      D  +  +     G G +  D     + L FAP+++ RLK++ EK  E+GV+ L PVLT  T        + + K+  GLV   EAAEQCER+ VP V    +P ++    +E  R    R                     +++C+ER+  A+PI+E L    ++  +D  +      G         + ++GPEGGF P E+ AM  +P +  VSLGP VLRAETA + A+  +  +  AR
Sbjct:  150 VSSEVQRSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPD--MEPKREIGRSDKKRTRRGSDVSLIAKARIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDVAPRHAEEMMKKMEGGLV---EAAEQCERIGVPEV----LPAMTFDALLEEERGGGGR---------------------LYICREREG-ARPIMEVLERDWKEINEDRKN------GKKEEHRGTPSIVIGPEGGFSPRELAAMKGHPRL--VSLGPSVLRAETAGLVAVGVYVTWQEAR 439          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A6I6MNK5_9CAUL (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Terricaulis silvestris TaxID=2686094 RepID=A0A6I6MNK5_9CAUL)

HSP 1 Score: 133 bits (335), Expect = 6.650e-32
Identity = 107/317 (33.75%), Postives = 158/317 (49.84%), Query Frame = 3
Query:  447 PRVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCT-TRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFW 1394
            PR+ + D NL  G  + L   Q R++ +V+RL +G  +RVF+  +GE+ A VS+ + RG               + + VD+L+R                A PD++L+FAP+++    L+VEK  ELGV R+ PV+T RT    + ++  L +L  + A EAAEQ ER   P +   PV L  ++   ++ R       +G DA      E+GR               A PI +AL  +          +G   +GG S    ++A L+GPEGGF P+E R + A  FV  VSLGP +LRAETA + ALS   + W
Sbjct:    4 PRLLI-DQNLRPGAAIALDEAQARHVGTVLRLDEGDTLRVFNARDGEWSAKVSAKTKRG---------------MIVAVDALLREAR-------------ATPDLDLLFAPVKRHATDLIVEKATELGVRRIRPVITQRT----IVETVRLDRLQSI-AREAAEQTERFDAPEIMD-PVSLAKIVDGWDAARPLIYADEAGDDANAAWGGESGR---------------AAPIAQALLTWTAGVSPAIAGAGRRDAGGPS----KLALLIGPEGGFTPEERRMLRALTFVTPVSLGPRILRAETAVIAALSVIQSTW 266          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A258H0U3_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258H0U3_9PROT)

HSP 1 Score: 132 bits (333), Expect = 8.750e-32
Identity = 106/314 (33.76%), Postives = 145/314 (46.18%), Query Frame = 3
Query:  447 PRVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSA 1388
            PR++++  +L  G  + +  +Q  YL  VMRL  G  VRVF+G +GEF A +S +               G  +V + +    R Q             VA PD+ L+FAP++K R   +VEK VELGV+ + PV+T RT     SDS  + +LG + A+EAAEQ ER+ VP V        +L    E+R       +G D       E+GR LP                L+A+    RD                       A L+GPEGGF   E   +   PFV  V LGP +LRAETAA+ AL+ W A
Sbjct:    5 PRLHVAP-DLAAGTTITIDGDQAHYLSRVMRLGPGDAVRVFNGRDGEFAATISEA---------------GKNAVRVALAEQTREQ-------------VATPDLWLMFAPLKKDRTDFVVEKAVELGVAEIRPVITERTN----SDSVRVDRLGRI-AIEAAEQTERLDVPPVREAQKLWAALEGWAETRTLIFADEAGDDTGRPWGGESGRALP----------------LDAMLRGLRD--------------------GPAAILIGPEGGFSAAERTRLRGLPFVRAVGLGPRILRAETAAVAALAIWQA 248          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A1H4DH21_9RHOB (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4DH21_9RHOB)

HSP 1 Score: 132 bits (332), Expect = 1.120e-31
Identity = 113/316 (35.76%), Postives = 149/316 (47.15%), Query Frame = 3
Query:  444 APRVYLS-DSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSA 1388
            AP+V L  D+ L  G  V L   Q  YL +VMRL  G  V +F+G +GE+ A  + +  +GG                LR  +L+R Q        +EG     PD++LIFAPI+K R   + EK  E+G  RL P LT  T    V+  +         AVEAAEQCE ++VP+V   P PL +LL   E+ R                          + VC E   DA P ++AL    R+       SG G            A L+GPEGGF P+E   ++  PFV  VSLGP VLRA+TAA+ AL+ W A
Sbjct:    5 APKVRLFVDAPLGDGAAVALERAQAHYLFTVMRLGQGDAVALFNGRDGEWRAVATEAGRKGGA---------------LRCAALLRPQ--------AEG-----PDLDLIFAPIKKARTDFIAEKACEMGARRLIPCLTRFTNAERVNVERLRAH-----AVEAAEQCEILSVPQVLA-PAPLAALLDAWEAGRR-------------------------LMVCDEA-RDAPPAMDALRAAGRE-----AGSGPG----------PWAVLIGPEGGFAPEERARLSEAPFVTRVSLGPRVLRADTAAVAALALWQA 245          
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Match: A0A539DJ36_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A539DJ36_9PROT)

HSP 1 Score: 132 bits (332), Expect = 1.120e-31
Identity = 105/316 (33.23%), Postives = 152/316 (48.10%), Query Frame = 3
Query:  447 PRVYLSDSNLHVGKIVELTTEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVDSLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVSRLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVPLLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAKPILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEMRAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFW 1394
            PR+++ ++ L  G  V L   Q RYL +VMRL  G+PVRVF+G++GE+ A ++ +  RG                 L + +  R Q              A PD+ L+FAP+++    L+VEK  ELGV  L PVLT RT    VS++  L +L  + A+EAAEQ ER+ VP +   P+PL  +L   +  R     V   +A  +  +  G     A           +P+ EAL +                          +A L GPEGGFD +E R + + P+V  VSLGP +LRAETA + AL+   + W
Sbjct:    4 PRLFV-EAPLVAGAAVPLEEGQARYLTAVMRLAPGAPVRVFNGMDGEWAATLAQAGKRG---------------ASLSIGAQTRTQ-------------TAPPDLTLLFAPVKRHGTDLIVEKATELGVRTLQPVLTRRT----VSETVRLERLRAI-AIEAAEQTERLDVPEIAA-PLPLHRILDGWDGERPL---VYADEAADDPSAAWGGAQGRA-----------RPVGEALRDVRA---------------------PALALLTGPEGGFDAEERRLLRSLPYVVPVSLGPRILRAETAVIAALAVIQSSW 249          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE1.460e-11960.6816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI2.850e-9858.0616S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA1.560e-4239.7916S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
UPI0010745A2F4.490e-3332.5916S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A2E4XSR1_9PROT4.980e-3334.82Ribosomal RNA small subunit methyltransferase E n=... [more]
W7TJZ1_9STRA2.040e-3232.8316S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6I6MNK5_9CAUL6.650e-3233.75Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A258H0U3_9PROT8.750e-3233.76Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1H4DH21_9RHOB1.120e-3135.76Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A539DJ36_9PROT1.120e-3133.23Ribosomal RNA small subunit methyltransferase E n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3642937..3645357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue2.2e-81
Seed eggNOG ortholog2880.D7G8G1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1576
Cds size1323
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15812.1prot_C-linearis_contig8.15812.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3643104..3645271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.0135725-UTR-C-linearis_contig8:3642936..36431031622930576.0135725-UTR-C-linearis_contig8:3642936..3643103Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3642937..3643103 -
1690881140.9970908-UTR-C-linearis_contig8:3642936..36431031690881140.9970908-UTR-C-linearis_contig8:3642936..3643103Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3642937..3643103 -
1622930576.100804-UTR-C-linearis_contig8:3645271..36453571622930576.100804-UTR-C-linearis_contig8:3645271..3645357Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3645272..3645357 -
1690881141.056003-UTR-C-linearis_contig8:3645271..36453571690881141.056003-UTR-C-linearis_contig8:3645271..3645357Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3645272..3645357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.0645306-CDS-C-linearis_contig8:3643103..36442641622930576.0645306-CDS-C-linearis_contig8:3643103..3644264Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3643104..3644264 -
1690881141.0196831-CDS-C-linearis_contig8:3643103..36442641690881141.0196831-CDS-C-linearis_contig8:3643103..3644264Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3643104..3644264 -
1622930576.0840442-CDS-C-linearis_contig8:3645109..36452711622930576.0840442-CDS-C-linearis_contig8:3645109..3645271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3645110..3645271 -
1690881141.036447-CDS-C-linearis_contig8:3645109..36452711690881141.036447-CDS-C-linearis_contig8:3645109..3645271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3645110..3645271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15812.1

>prot_C-linearis_contig8.15812.1 ID=prot_C-linearis_contig8.15812.1|Name=mRNA_C-linearis_contig8.15812.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=441bp
MMIFLLLTLPLVPFLRHADAFVFVPSTKVRLPPQEGPHPSGRGANQYAAG
RPQHRLRGTAEEGSAAHSTENAATAETTPPSAAGPHGTDDLGLAHLDGVA
ASTTDGISTPVPVRSVPTRAPRVYLSDSNLHVGKIVELTTEQTRYLVSVM
RLRDGSPVRVFDGVNGEFLAAVSSSSGRGGMSRPRRSGLSGDKSVELRVD
SLIRRQPDSSNGKGSEGQDVAAPDVELIFAPIRKQRLKLMVEKTVELGVS
RLTPVLTARTQKGSVSDSKALGKLGLVTAVEAAEQCERMAVPRVGGTPVP
LLSLLQDVESRRSCTTRVSGTDAQGERESETGRLLPEAIFVCKERDTDAK
PILEALAEYARDRQDDATSSGDGGSGGNSPQNAEVAFLVGPEGGFDPDEM
RAMAAYPFVCFVSLGPLVLRAETAAMYALSSWSAFWAARR*
back to top

mRNA from alignment at C-linearis_contig8:3642937..3645357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15812.1 ID=mRNA_C-linearis_contig8.15812.1|Name=mRNA_C-linearis_contig8.15812.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2421bp|location=Sequence derived from alignment at C-linearis_contig8:3642937..3645357- (Chordaria linearis ClinC8C monoicous)
GAGGGTACATACGTATCGAGCACTTGAGACACGTGCAGGCGTGCAGGGCA GCGTTGCCGAGGACCACCGACCACCTCTGCGCTCTGATGATGATCTTCCT CTTACTCACACTGCCGTTGGTTCCGTTCTTACGGCACGCTGATGCCTTCG TGTTCGTGCCGTCGACGAAGGTTCGTCTCCCTCCTCAAGAAGGGCCCCAT CCTTCAGGTCGGGGCGCAAACCAGTATGCTGCCGGGCGACCTCAGCACGT ACGTACATTCAGAGCTAGTTGGCCGGGTCCAAACACCCAAAGCCGCATGA TGCATATGCTGTACGTCGTACTCCCTTACATTCAGAGCTAGCTGGTGTGT GCACGATATTTAAATGTATGCGTGTCTACAGGCTGCACCTTACGTACAGT ATCAGCGTTTTGAGGAGATGCCTCCACATAACAAGCAGTGCAGGTACGCC ACATAGCAGGTCGTCCGCCGTGCTGTACAAAAACGCAGCAACTTTACTAT TCTAGCATTGTTGAGAGACCCACGTTTATTTTTGTTAGTGGTACTTGAGA TACGAGTCCGATCTACTTCAAGTGCACCGCTGCGATACAATCACCCCAAT CTTGGGAGGGTTACTGCTGTAGACGCTACCTTGGAGACACCTAGATCTCC CACGGCAGCAGTAGTTACTACAACAGGCGCATACGCATGTTACGTGCTTG GATGCCGCTGGTCCATACGCCGGTTTAGCGCAACCGATGGACGCTCACAC GCGAGTGAAAGAACACGATAAAGTTTTGAAGCACACGCTATCTGTGTCCC CTCGGGGTTACGTGCTACATAGATAGGATACGGTGTGTGGGGGGGTACGA GTGGCCCCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCATGTGC CTGTTCCTCGGATAACCTAGTACTCTATATACTAACACCTACCCGCAGTG CAGTGCGGTGACGCCATCTACATTGATCATTAATGCTGAGCAGCGCTGAG AGCTAGAGCCGTTTTCATTCTACAGCTCATCCTCTCCGAACCTCCCCCGC TGTTGTTCGTTCTTTTCGTGTGCCACACACTTGTCCGTGGAAGAGACTGA GAGGTACAGCCGAGGAGGGCAGTGCAGCGCATTCGACGGAGAATGCAGCC ACCGCAGAGACAACACCACCGAGCGCGGCTGGGCCGCATGGAACAGACGA CCTTGGTCTTGCCCATCTTGACGGCGTCGCAGCAAGCACGACCGATGGCA TCTCAACTCCGGTTCCGGTGCGGTCGGTGCCAACGCGTGCCCCTCGCGTG TATCTCAGCGATTCAAATCTGCACGTAGGGAAGATCGTCGAGCTAACAAC TGAGCAAACCCGTTACCTCGTGAGCGTTATGCGTCTGCGGGACGGCAGCC CTGTGCGCGTGTTTGACGGCGTCAACGGCGAGTTCCTTGCTGCGGTTTCA AGCAGCAGCGGGCGCGGCGGTATGAGCCGACCGAGGCGATCAGGACTTAG CGGTGATAAGTCAGTAGAATTGCGGGTTGACAGTCTTATTCGACGGCAAC CCGACAGTAGTAACGGGAAGGGTAGTGAGGGGCAGGACGTGGCCGCTCCC GACGTTGAGCTCATCTTCGCACCCATTCGGAAGCAACGCTTAAAGCTTAT GGTGGAGAAAACTGTCGAGTTGGGCGTCTCGCGGCTAACGCCCGTGTTGA CCGCTCGCACGCAGAAGGGCTCAGTTTCGGATTCGAAAGCACTCGGTAAG CTTGGGCTTGTCACGGCTGTTGAGGCTGCCGAGCAATGCGAGCGCATGGC AGTGCCACGTGTGGGGGGAACGCCCGTGCCGCTCCTGTCTCTTCTTCAGG ATGTCGAGTCGCGACGTTCTTGCACAACACGAGTTAGCGGTACCGATGCT CAAGGAGAGCGTGAAAGTGAGACAGGACGCTTGTTACCAGAGGCTATTTT CGTGTGCAAGGAGAGGGACACCGATGCGAAGCCTATTTTGGAGGCGCTCG CCGAGTATGCACGGGATAGGCAGGACGACGCCACAAGTTCTGGCGATGGT GGCAGTGGCGGAAATTCCCCTCAGAACGCAGAGGTCGCATTCCTCGTGGG GCCGGAAGGGGGGTTCGATCCTGACGAGATGAGAGCGATGGCGGCGTACC CGTTTGTGTGCTTTGTGTCCCTTGGACCTTTGGTGCTGCGAGCTGAAACG GCGGCTATGTACGCCCTGAGTTCGTGGAGCGCGTTCTGGGCTGCACGGCG ATAGTGACGTAACCCTGTGGTGCTTGTGCTATTATATATAGCACTGCTGT GTATGATTGGTCGGCGTCTTTCTTCCTCTACGGCTGCACGAATGGTTTAT TTCGTTTGTCGTCCCCATGGGTCGTGGATGTGTTTTTCGCATTTGTGAAA AATGTTTTGAGTGTACAGGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:3642937..3645357-

>mRNA_C-linearis_contig8.15812.1 ID=mRNA_C-linearis_contig8.15812.1|Name=mRNA_C-linearis_contig8.15812.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2646bp|location=Sequence derived from alignment at C-linearis_contig8:3642937..3645357- (Chordaria linearis ClinC8C monoicous)
ATGATGATCTTCCTCTTACTCACACTGCCGTTGGTTCCGTTCTTACGGCA
CGCTGATGCCTTCGTGTTCGTGCCGTCGACGAAGGTTCGTCTCCCTCCTC
AAGAAGGGCCCCATCCTTCAGGTCGGGGCGCAAACCAGTATGCTGCCGGG
CGACCTCAGCACATGATGATCTTCCTCTTACTCACACTGCCGTTGGTTCC
GTTCTTACGGCACGCTGATGCCTTCGTGTTCGTGCCGTCGACGAAGGTTC
GTCTCCCTCCTCAAGAAGGGCCCCATCCTTCAGGTCGGGGCGCAAACCAG
TATGCTGCCGGGCGACCTCAGCACAGACTGAGAGGTACAGCCGAGGAGGG
CAGTGCAGCGCATTCGACGGAGAATGCAGCCACCGCAGAGACAACACCAC
CGAGCGCGGCTGGGCCGCATGGAACAGACGACCTTGGTCTTGCCCATCTT
GACGGCGTCGCAGCAAGCACGACCGATGGCATCTCAACTCCGGTTCCGGT
GCGGTCGGTGCCAACGCGTGCCCCTCGCGTGTATCTCAGCGATTCAAATC
TGCACGTAGGGAAGATCGTCGAGCTAACAACTGAGCAAACCCGTTACCTC
GTGAGCGTTATGCGTCTGCGGGACGGCAGCCCTGTGCGCGTGTTTGACGG
CGTCAACGGCGAGTTCCTTGCTGCGGTTTCAAGCAGCAGCGGGCGCGGCG
GTATGAGCCGACCGAGGCGATCAGGACTTAGCGGTGATAAGTCAGTAGAA
TTGCGGGTTGACAGTCTTATTCGACGGCAACCCGACAGTAGTAACGGGAA
GGGTAGTGAGGGGCAGGACGTGGCCGCTCCCGACGTTGAGCTCATCTTCG
CACCCATTCGGAAGCAACGCTTAAAGCTTATGGTGGAGAAAACTGTCGAG
TTGGGCGTCTCGCGGCTAACGCCCGTGTTGACCGCTCGCACGCAGAAGGG
CTCAGTTTCGGATTCGAAAGCACTCGGTAAGCTTGGGCTTGTCACGGCTG
TTGAGGCTGCCGAGCAATGCGAGCGCATGGCAGTGCCACGTGTGGGGGGA
ACGCCCGTGCCGCTCCTGTCTCTTCTTCAGGATGTCGAGTCGCGACGTTC
TTGCACAACACGAGTTAGCGGTACCGATGCTCAAGGAGAGCGTGAAAGTG
AGACAGGACGCTTGTTACCAGAGGCTATTTTCGTGTGCAAGGAGAGGGAC
ACCGATGCGAAGCCTATTTTGGAGGCGCTCGCCGAGTATGCACGGGATAG
GCAGGACGACGCCACAAGTTCTGGCGATGGTGGCAGTGGCGGAAATTCCC
CTCAGAACGCAGAGGTCGCATTCCTCGTGGGGCCGGAAGGGGGGTTCGAT
CCTGACGAGATGAGAGCGATGGCGGCGTACCCGTTTGTGTGCTTTGTGTC
CCTTGGACCTTTGGTGCTGCGAGCTGAAACGGCGGCTATGTACGCCCTGA
GTTCGTGGAGCGCGTTCTGGGCTGCACGGCGATAGAGACTGAGAGGTACA
GCCGAGGAGGGCAGTGCAGCGCATTCGACGGAGAATGCAGCCACCGCAGA
GACAACACCACCGAGCGCGGCTGGGCCGCATGGAACAGACGACCTTGGTC
TTGCCCATCTTGACGGCGTCGCAGCAAGCACGACCGATGGCATCTCAACT
CCGGTTCCGGTGCGGTCGGTGCCAACGCGTGCCCCTCGCGTGTATCTCAG
CGATTCAAATCTGCACGTAGGGAAGATCGTCGAGCTAACAACTGAGCAAA
CCCGTTACCTCGTGAGCGTTATGCGTCTGCGGGACGGCAGCCCTGTGCGC
GTGTTTGACGGCGTCAACGGCGAGTTCCTTGCTGCGGTTTCAAGCAGCAG
CGGGCGCGGCGGTATGAGCCGACCGAGGCGATCAGGACTTAGCGGTGATA
AGTCAGTAGAATTGCGGGTTGACAGTCTTATTCGACGGCAACCCGACAGT
AGTAACGGGAAGGGTAGTGAGGGGCAGGACGTGGCCGCTCCCGACGTTGA
GCTCATCTTCGCACCCATTCGGAAGCAACGCTTAAAGCTTATGGTGGAGA
AAACTGTCGAGTTGGGCGTCTCGCGGCTAACGCCCGTGTTGACCGCTCGC
ACGCAGAAGGGCTCAGTTTCGGATTCGAAAGCACTCGGTAAGCTTGGGCT
TGTCACGGCTGTTGAGGCTGCCGAGCAATGCGAGCGCATGGCAGTGCCAC
GTGTGGGGGGAACGCCCGTGCCGCTCCTGTCTCTTCTTCAGGATGTCGAG
TCGCGACGTTCTTGCACAACACGAGTTAGCGGTACCGATGCTCAAGGAGA
GCGTGAAAGTGAGACAGGACGCTTGTTACCAGAGGCTATTTTCGTGTGCA
AGGAGAGGGACACCGATGCGAAGCCTATTTTGGAGGCGCTCGCCGAGTAT
GCACGGGATAGGCAGGACGACGCCACAAGTTCTGGCGATGGTGGCAGTGG
CGGAAATTCCCCTCAGAACGCAGAGGTCGCATTCCTCGTGGGGCCGGAAG
GGGGGTTCGATCCTGACGAGATGAGAGCGATGGCGGCGTACCCGTTTGTG
TGCTTTGTGTCCCTTGGACCTTTGGTGCTGCGAGCTGAAACGGCGGCTAT
GTACGCCCTGAGTTCGTGGAGCGCGTTCTGGGCTGCACGGCGATAG
back to top