mRNA_C-linearis_contig8.15808.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15808.1 vs. uniprot
Match: A0A6H5KK87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK87_9PHAE) HSP 1 Score: 953 bits (2464), Expect = 0.000e+0 Identity = 618/1214 (50.91%), Postives = 718/1214 (59.14%), Query Frame = 3
Query: 1887 QQEGRDDDDGLILQCTRVYESLLHTAEDWVSSQRGAALGIGPPLQAVGRRF----RRGEEEEKEGDFLADLVFAAYACTLRYQCILVARSQHLAHEVAFLSCLGAAVDAASSVLLLHKRRRGEESTGAGSNSGRVESSSQLLRVRPSSVGVQEVVDRTSAD-----------------------TPAETSTAALCLQTVLSVAVEADVVSWVLDLYARCGTEGSS-------------SRDGGDACGATTRELLAEVLQSFLFAQGWVNGLCAHGDPDSPSYRGDCSDGDGGVMTDGFSTFGDTVRLVLKSWS----ASGEGVQSPLDQYALSLLGTNADNGDLCKLAAILVSLSPSFLGMLHPHVGCRLDAAVTLLRHVKTIPEAVFCLNLLSHIVL-SGDRQTWGGGG---GRHLSGLSDAVKDLLARFPVGDVALSPIPLSAAALLFSLLAGCDAFYADWLVAAPLVRIERALGEFGASRGGEKQAPDDAMDVAADCSEQQSVVAVWAQEFGREALTGVLEAALSRWGAEIEDSLQHHSQSDAVILRLASVLSMFPDVFFSLAFEMDSQSDDGEQRSRPELAGALGTVIPETLEILSAALSPVVSRRGDRSNENYRASKLACVSQVSQLASAFLRVRCEHGCYAPAGSGMHGSTTPSSRPGPPDFSLARACGALLQGVLDRRRGQGSSG-GGDSTHRALLSVLNLLNALLALAGGDSDLLRPDTQGLALALQESHAALSEVLAPTAMVIERLTGWLDLAPDTLAAFLQACVLWNAIESKHDVLGDDPNRSRLNPPFQVLREVLSLGGSGPCAIVGSGGGISSSSNNKGLSKPQASSPAPRRGVRRSLLQVLAMRCVESAAQTRFFSHQEVLALQLALQAMACDSSATVASAAHGALQALWEAYAGFIQPADLVGQSWNPFVVECSLENALRSLFGDPGESGVADLLRVVNDPGELRVDPPVVVSTIGRLLRWCEGKACPRLSHSKA---SGLEVLSETAAVSIHQCAIVLATNLRLTLGDGIDLRDDP---------QQRDRSRGGGGSREGREEGMRSDVA--FHLSDALAQMVHVLLCIHP-LPQEGLAVEERVRQDLVDALLALHPALLRFREV--------WPWLEQVSMPLSSGAYHDCALNCSAFNGYGGVFFVRYDNWRALSLALEPVSLAVLAGEIGTLVERLSGRPGVAARTEVGEGQDVHD 5312
QQEG DD GL+LQC RVYESLLHTAE+WVSSQ G+ +G G QA RF RRG E E LADLVF +Y TL YQC L+ARS++LAH+VA+LSCLGAAVDA S+VL + +G ++ S QL VRPS V QE+ DR P E S A CL T+L + VEADVVSW+L+LYARCG + SS S D DA GATT LL EVLQS L AQGWVNG+CAHG PS+ +C GD G STFG+TVRL+L+SW+ +SGE V PLD + +S LG ADNGDLCKL +LVS+SPSFLG+LHPHVGCR+D+AVTLLR++KT+PEAVFCLNL SHI+L GD+ G GG R LS AVKDLLARF V +VALS IPLSA+A+ F+LLAGC+AF +DWLVAAPL R++RAL EFGA + DD D+ A CSE R AL G+L A L RW E HHSQSDAVI RLA VL M PD SLAF+ DS + G ELA AL T+IPETLE LSAALSPVVSR DR N NY ASKL C S VSQ+ASAFL RC +G Y + T +S PP+ LARACG LLQG+L +RRGQGS G GGDST +ALLSVLNLL ALL L G DS LLR QGL LALQES AALSE+LA TA+ ERLTGWLD APD LAAFLQ VLA+RCVE AAQT FF+ QEVLALQLALQ +AC T+A+AAHGA+QALWE+Y+G +Q ADLVGQSWNPF+VECSLENALRSL D LL DP E +V PV+VS IGRLLRW GK C RL S A +E+LS TA ++ +C +LATNLR+ LGDG RDD Q S G +E E G + HL DAL ++V VL CI P L Q GL + + R++L+DAL+ LH AL+ RE W LEQVSMPLS GAYHD N Y GVFFV+YDNW ++S P+ LA LA E+ VE LS PG R E GE V D
Sbjct: 14 QQEGHDDG-GLVLQCARVYESLLHTAEEWVSSQ-GSTVG-GMSCQASANRFGGGGRRGTRGE-ESVSLADLVFGSYERTLSYQCNLIARSENLAHDVAWLSCLGAAVDATSAVLFHKRXXXXXXXSGGRTSKNGTMGSWQLFNVRPSFVNTQEL-DRDCVGFPGSGGSRASGGAVGGGEQEYSIAPGEVSIPASCLGTILKMVVEADVVSWMLNLYARCGGDRSSGGTTTHPSRSSEGSSDVVDAHGATTCALLMEVLQSLLHAQGWVNGVCAHG-AGRPSHEMEC--GDRG------STFGETVRLMLQSWTTRGVSSGEEVHMPLDHFVMSQLGKRADNGDLCKLVVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTVPEAVFCLNLFSHIILVEGDKIDGGRGGELSSRLGEDLSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSDWLVAAPLARVKRALTEFGAFCERQGATDDDIADLVAGCSE-------------RVALKGILGATLRRWRVEAGKDSPHHSQSDAVIYRLACVLLMSPDTLLSLAFDSDSHPN-GPMDLEQELASALATIIPETLEGLSAALSPVVSRHSDRGNTNYLASKLECASCVSQIASAFLHARCTYGYYTTIDRDVRARTGFASCQEPPEIPLARACGGLLQGLLRQRRGQGSFGDGGDSTFKALLSVLNLLGALLVLVGRDSFLLRKTNQGLVLALQESCAALSEMLASTAVATERLTGWLDHAPDVLAAFLQ---------------------------------------------------------------------------------VLAVRCVEGAAQTGFFNGQEVLALQLALQGIACHGGPTLAAAAHGAIQALWESYSGVLQSADLVGQSWNPFMVECSLENALRSLSRDQESGAGLGLLPSEKDPDEFQVGAPVLVSAIGRLLRWSAGKTCLRLRTSGALAGCNIELLSATAVAAVCRCTALLATNLRIALGDGTVQRDDRLGKRPRLGYQSSSNSSSGRSLKEMAENGEKGGDGERLHLFDALTRLVDVLTCIEPILSQAGLDLRSQARKELLDALVPLHSALVYSREGGSIRHETNWEQLEQVSMPLSRGAYHDGGRGHGESNSYEGVFFVKYDNWWSISGVSGPLQLAELAREVEKFVELLSRTPGAGLRMEGGESHAVQD 1118
BLAST of mRNA_C-linearis_contig8.15808.1 vs. uniprot
Match: D8LNY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY6_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 8.490e-133 Identity = 248/414 (59.90%), Postives = 287/414 (69.32%), Query Frame = 3
Query: 261 MFLHGVDSTDTGVVQAATDIMLALKDEIDDPVGVLTSLVSSTVSLGLPRASGHLYLIGQLLTNASQDLALVTTLGNACFGRYCCDNHHPAHPQAAARGVVDGSXXXXXXXXXXXXXXXTERRSAEQEQFQERLQGFGSFLASHALSASCQDHVKSDVLYVALELVECCTTA--GATIAPQDPSLSPP-GSDPFVSIMLGVPRLLAGRPSCDEPLQLHSIAYLATATAYCRLRTEMGVPGWACNACGVPEVLVALVDGAREFSPREMVAGXXXXXXXXXXXSLPTSSGG-LCNTLKTLLMASSYRVRSATARLVTLLCSDSRFSEEPAEADENSAVCFASGGRKTGG-LFFREVLIAAGATDFLLEAIKSERIGTPRVYLEAAEAFALSPVEFFHADNFSMKFAAPVLLRAFRDG 1487
M L+G+ S D VVQAATDIML+LKDE+ DPV VLTSL+SSTVSLGLPRASGHLYL+G+LL NAS D AL TLGN+CFGR H Q + +V G R E+ L+GFG+FLA+ ALS SC DH KSDVL+VALEL++CCT GA IAPQ P + PP G DPFVSIML +PRLLA R S DE LQLH IAYLAT YCR RTEMGVPGW+ N GVP+VL L +GARE +PRE++ S + SGG LC+TLKTLLM+SSYRVRSATARL+T LC D F E+ A EN+A+ G R+ G LFFRE+L+AAG+TDFL EAIKSER G+ R YLEAA+AFA SPVEFFHADNF MKFAAP+LL AFR G
Sbjct: 1 MLLNGIGSEDAEVVQAATDIMLSLKDELPDPVAVLTSLISSTVSLGLPRASGHLYLVGKLLANASYDRALAATLGNSCFGR------RDGHGQRQQQTLVIGDRSGQGIVPSHGGSGVETRDEGEE------LRGFGAFLAAQALSTSCSDHTKSDVLFVALELLDCCTAVCMGAGIAPQGPLMPPPPGGDPFVSIMLALPRLLARRSSSDELLQLHGIAYLATVARYCRQRTEMGVPGWSSNRDGVPDVLAELFEGAREATPREVLP-----TGGGGEGSKQSFSGGMLCSTLKTLLMSSSYRVRSATARLITSLCRDVPFGEDSELAHENAAM----GSRRNGSSLFFREILLAAGSTDFLFEAIKSEREGSTRYYLEAADAFASSPVEFFHADNFCMKFAAPILLDAFRGG 393
BLAST of mRNA_C-linearis_contig8.15808.1 vs. uniprot
Match: D8LNY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY5_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 1.250e-124 Identity = 268/501 (53.49%), Postives = 316/501 (63.07%), Query Frame = 3
Query: 1887 QQEGRDDDDGLILQCTRVYESLLHTAEDWVSSQRGAALGIGPPLQAVG--------------RRFRRGEEEEKEGDFLADLVFAAYACTLRYQCILVARSQHLAHEVAFLSCLGAAVDAASSVLLLHKRRRGEESTGAGSNSGRVESSS-QLLRVRPSSVGVQEVVDRTSADT-----------------PAETSTAALCLQTVLSVAVEADVVSWVLDLYARCGTEGSS-------------SRDGGDACGATTRELLAEVLQSFLFAQGWVNGLCAHGDPDSPSYRGDCSDGDGGVMTDGFSTFGDTVRLVLKSWSASG----EGVQSPLDQYALSLLGTNADNGDLCKLA---------------AILVSLSPSFLGMLHPHVGCRLDAAVTLLRHVKTIPEAVFCLNLLSHIVLSGDRQTWGGGGGRHLSGLSD----AVKDLLARFPVGDVALSPIPLSAAALLFSLLAGCDAFYADWLVAAPLVRIERALGEFGA 3185
QQEG DD GL+LQC RVYESLLHTAE+WVSSQ G+ +G G QA RR RGEE LADLVF++Y TL YQC L+A+S++L H+VA+LSCLGAAVDA S+VL HKRRR E + G S S QLL VRPS V QE+ S + P E S A CL+T+L V VEADVVSW+LDLYA+CG + SS S D DA GATT LL EVLQS L AQGWVNG+CAHG D PSY +C G G T G+TVRL+L+SW+ G E V PLDQ+ +S LG ADNGDLCKL +LVS+SPSFLG+LHPHVGCR+D+AVTLLR++KT+PEAVFCLNL SHIVL + GG GG S LS+ AVKDLLARF V +VALS IPLSA+A+ F+LLAGC+AF ++WLVAAPL R++RAL EFGA
Sbjct: 14 QQEGHDDG-GLVLQCARVYESLLHTAEEWVSSQ-GSTVG-GTSCQASAXXXXXXXXXXXXXXRRGFRGEESVG----LADLVFSSYERTLSYQCNLIAQSENLTHDVAWLSCLGAAVDATSAVLF-HKRRREEAAARGGRTSKNGTMGSWQLLNVRPSFVNTQELDRDCSGGSGASGGAVGGGEQEYSIAPGEVSIPASCLETILKVVVEADVVSWMLDLYAQCGGDTSSGGTTTHSSQSSERSSDVVDAHGATTCALLMEVLQSLLDAQGWVNGVCAHG-ADRPSYEMECG-GRG-------PTIGETVRLMLQSWTTRGVSGAEEVHMPLDQHVMSQLGKRADNGDLCKLVWWYRGRYNRVEAKQKVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTLPEAVFCLNLFSHIVLVEGDKIDGGRGGELSSRLSEDLSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSNWLVAAPLARVKRALTEFGA 497 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15808.1 >prot_C-linearis_contig8.15808.1 ID=prot_C-linearis_contig8.15808.1|Name=mRNA_C-linearis_contig8.15808.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1771bp MADSTSLVVDHVLNPDHDALKHSAVFKGADGSFFCVHCAAERYNGAPAFRback to top mRNA from alignment at C-linearis_contig8:3604881..3612929- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15808.1 ID=mRNA_C-linearis_contig8.15808.1|Name=mRNA_C-linearis_contig8.15808.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8049bp|location=Sequence derived from alignment at C-linearis_contig8:3604881..3612929- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3604881..3612929- >mRNA_C-linearis_contig8.15808.1 ID=mRNA_C-linearis_contig8.15808.1|Name=mRNA_C-linearis_contig8.15808.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=10626bp|location=Sequence derived from alignment at C-linearis_contig8:3604881..3612929- (Chordaria linearis ClinC8C monoicous)back to top |