mRNA_C-linearis_contig8.15800.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5JI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE) HSP 1 Score: 394 bits (1013), Expect = 1.610e-122 Identity = 230/361 (63.71%), Postives = 253/361 (70.08%), Query Frame = 2
Query: 809 NIHSTQRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGR--HSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGL--QYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTA 1879
+IHSTQRVEST LK MERSGT+VDVH A+VGKV DA KSKRQ GGTVHRVRQP +S D V L GFDFVREGMRHAQCSA AM+ MSTEAL A Y+ G+G V + L SNPASA LCYDP SGG DGTWTTRTSVKFFADLLEG QVV L + + + P P G P L P LRLLVDGLGCRH LR MRE++FGLNGGC+APRWRDGT P T+A LAAKRAVPSN A LP A+PPAP DPG FSHSKPTARASNWASC A KE+ASLMTEV+++APCQRVLDN L NHAKQLIEVE E ++ R GV A+ TA
Sbjct: 245 SIHSTQRVESTINVLKMTMERSGTLVDVHDAIVGKVKDDATKSKRQADGGTVHRVRQPNASAVDTVTDGWLRGFDFVREGMRHAQCSAVAMKDMSTEALGAMGYKVHILARGDGNV----RRELANMVSNPASAGLCYDPASGGGDGTWTTRTSVKFFADLLEG-QVVDLLVRITRSYPDPD----GGPDYCHLVALGPDGFVLCTCLRLLVDGLGCRHDLRAMRETDFGLNGGCLAPRWRDGTKPWTLAHLAAKRAVPSNSSAGLPGAVPPAPTDPGAFSHSKPTARASNWASCVAFGKEIASLMTEVNSVAPCQRVLDN------LRNHAKQLIEVE----SELASGRGRPGVAAKETA 586
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE) HSP 1 Score: 354 bits (908), Expect = 7.150e-109 Identity = 208/370 (56.22%), Postives = 243/370 (65.68%), Query Frame = 2
Query: 824 QRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPG 1924
+RVES NGALKTAM RSG++VDVH +VGKV + R Q +SP + V S L GFD+VR MRH +CSA+AM+ MSTEALAA AY G + S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE ++V + S + GP+ + L P LRLLV GLGCRH LR +R+++FG NGGCIA RWRD T P T+ LAAKRA P+N A +P +PPAP DPGVFSHSKPTAR SNWASC A KE+ASLMT+VD +APCQRVL+N L N+AKQLIEVE RSQHEA+T+RIF GVVARP ATDPPEG VGAGPG
Sbjct: 229 KRVESINGALKTAMHRSGSMVDVHDTIVGKVQXPWLPACRT----------QQAASPLETVTNSWLEGFDYVRRAMRHVECSAYAMKDMSTEALAAMAYDVEILTTGNEDV--HREIARIVSDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGDMPPAPTDPGVFSHSKPTARVSNWASCVAFGKELASLMTDVDAVAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAGPG 572
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE) HSP 1 Score: 327 bits (837), Expect = 2.450e-97 Identity = 190/332 (57.23%), Postives = 220/332 (66.27%), Query Frame = 2
Query: 941 RQTSGGT--VHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGP 1921
RQ GT + V +SP + V S L GFD+VR MRH +CSA+AM+ MSTEALAA AY G G + S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE ++V + S + GP+ + L P LRLLV GLGCRH LR +R+++FGLNGGCIA RWRD T P T+ L AKRA P+N A +P +PPAP DPGVFSHSKPTARASNWASC A KE+ASLMT+VD IAPCQRVL+N L N+AKQLIEVE RSQHEA+T+RIF GVVARP ATDPPEG VGAGP
Sbjct: 307 RQAVSGTAALQTVMPKAASPLETVTNSWLEGFDYVRRAMRHVECSAYAMKDMSTEALAAMAYDVEILGTG--NDDVHREIARMVSDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGLNGGCIASRWRDSTQPWTMEHLTAKRAAPANTAAGVPGDMPPAPMDPGVFSHSKPTARASNWASCVAFGKELASLMTDVDAIAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAGP 622
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE) HSP 1 Score: 299 bits (766), Expect = 2.160e-88 Identity = 190/384 (49.48%), Postives = 231/384 (60.16%), Query Frame = 2
Query: 803 TFNIHSTQRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPS--NIGAELPRALPPAPADPGVFS---HSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPGGGRGR 1939
T I STQRVESTNGALK AM R+GT+VDVH A+ GKV+ D NK+K QT+GG + RVR PT S F V+ S L F FV +GM HA CSAFAM+ MS EALAA Y G L + +NP A L Y+ G D T TRTS++FFA+LL+ QV+ + +T+ L P LR+LVDGLGCRHALR MR ++ G G CIAPRWRDG MP T+ LAAK AV + + G E+P P PAD FS HSK T RAS WASC A KE+A++ +D +A R+LDN L HA+QL++VE+RSQH AST+R+FKGVV R T A DPPEG VG P G G+
Sbjct: 139 TLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKTKTQTTGGPIQRVRVPTQSSFGDVRDSWLADFKFVHDGMLHAGCSAFAMKDMSDEALAAVGYSAETLATG--NDDVHRLLTDFVANPPQAGLLYETDVG--DVTLATRTSIEFFAELLKD-QVLDRLVRVSRSFGDQTKY-----CQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWRDGIMPWTMGRLAAKPAVAATTDAGGEMP----PPPADASAFSRFSHSKSTVRASAWASCCAWGKELATITAPIDNVAGITRILDN------LTIHARQLVDVELRSQHNASTTRVFKGVVTRSTPAPDPPEGGGVGMTPSGDSGK 502
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5KN91_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN91_9PHAE) HSP 1 Score: 286 bits (731), Expect = 2.010e-85 Identity = 162/254 (63.78%), Postives = 179/254 (70.47%), Query Frame = 2
Query: 1187 SNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQV-VGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPGGGRGRGN 1945
SNPASA CYDPT GG DGTWTTRTSVKFF D++EG V + ++ + + P P+ G P+ L P LR LVDGL CRHA MRE +FG N GCIAPRWRD M T+A LAAKRAVPSN A LP ALP APADPGVFSHSKPTARASNW+SC A KEVASLMT D++APCQRVL N L+NHAKQLI+VEV SQHE STSRIFKGVVARPT TDPPE D PG GR RG+
Sbjct: 24 SNPASAGWCYDPTYGGGDGTWTTRTSVKFFVDMVEGHDVDLLVRITTSFPNPA----GGPAYGHLVALGPDGFVLCTCLRFLVDGLCCRHAFLAMREMDFGFNPGCIAPRWRDEEMSWTLAPLAAKRAVPSNTSAGLPGALPQAPADPGVFSHSKPTARASNWSSCLAFGKEVASLMTAFDSVAPCQRVLGN------LMNHAKQLIDVEVASQHETSTSRIFKGVVARPTTTTDPPEEDDARTAPGSGRTRGS 267
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5KQR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR1_9PHAE) HSP 1 Score: 263 bits (673), Expect = 3.180e-80 Identity = 153/268 (57.09%), Postives = 170/268 (63.43%), Query Frame = 2
Query: 887 DVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAAS 1690
DVH A+VGKV DANKSKR+T+ G V RVRQPT++PF+R K LG FDFVR+G RH +CSAFAM M EALAA Y+ G + L S PASA LCY PTSGG DGTWTTRTS F+D GG G + L P LRLLVDG GCRHALR MRE +FG NGGCIAPRWRD T+P +AALAAKRAVP N A +P +PPAPADPGVFSHS PTARASNWASC AS
Sbjct: 3 DVHDAIVGKVQDDANKSKRKTARGAVQRVRQPTATPFERGKDRWLGDFDFVRQGTRHPKCSAFAMNDMPAEALAAMGYKAEILATG--NDNVQRELAKMVSEPASAGLCYYPTSGGGDGTWTTRTS---FSD---GGPNCGHLVA---------------------LGPDGFILCTRLRLLVDGPGCRHALRAMREMDFGFNGGCIAPRWRDSTLPWMMAALAAKRAVPENTVAGVPGEMPPAPADPGVFSHSNPTARASNWASCVAS 241
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5KKK0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK0_9PHAE) HSP 1 Score: 266 bits (679), Expect = 7.440e-79 Identity = 148/247 (59.92%), Postives = 172/247 (69.64%), Query Frame = 2
Query: 1187 SNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAG 1918
S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE ++V + S + GP+ + L P LRL V GLGCRH LR +R+++FG NGGCIA RWRD T P T+ LAAKRA P+N A +P +PPAP DP FS+SKPTAR SNWASC A KE+ASLMT+VD +APCQRVL+N L N+AKQLIEVE RSQHEA+T+RIF GVVARP ATDPPEG VGAG
Sbjct: 132 SDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLRVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGGMPPAPVDPVFFSNSKPTARVSNWASCVAFGKELASLMTDVDAVAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAG 364
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE) HSP 1 Score: 242 bits (617), Expect = 7.790e-71 Identity = 120/162 (74.07%), Postives = 132/162 (81.48%), Query Frame = 1
Query: 322 YKYHLALIAVVDKENCTQIAMQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQSHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKTDFFKLLTLGAHMYTYV*DFVFDPRRVQRWASFLHPGIHTINI 807
YKYHLALI VVDKEN TQIAMQALL+N RTEDFKFLFRVF+ELCEG QPE AAM AIDEECP SHQKLCLFHMD+NL KHG GL QGVLA VKG +AAA A TEEMFL+HK + FK L +HMY Y+ DFVF+PRRVQRWASF+HPG+HT+NI
Sbjct: 147 YKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPE--------AAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVKGMFHAAAYAHTEEMFLKHKANLFKQLKPDSHMYKYMADFVFEPRRVQRWASFVHPGLHTLNI 300
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.100e-67 Identity = 116/147 (78.91%), Postives = 128/147 (87.07%), Query Frame = 1
Query: 316 TRYKYHLALIAVVDKENCTQIAMQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQSHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKTDFFKLLTLGAHMYTYV*DFVFDPRR 756
TRYKY LALI VVDKEN TQIAMQALLSN RTEDF+FLFRVF+ELCEGAQPEVIFTD DQAAM AID+ECP S Q+LCLFHMD+NLGKHG+GLG GVLAAVKG +AAA AQTEEMFLRHK D FK LT G+HMY Y+ + VF+PR+
Sbjct: 181 TRYKYWLALIVVVDKENYTQIAMQALLSNERTEDFRFLFRVFRELCEGAQPEVIFTDGDQAAMTAIDQECPDSTQQLCLFHMDENLGKHGQGLGAGVLAAVKGAFHAAAYAQTEEMFLRHKMDVFKELTPGSHMYKYMEETVFEPRQ 327
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Match: A0A6H5K2Y1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y1_9PHAE) HSP 1 Score: 239 bits (609), Expect = 1.310e-64 Identity = 168/409 (41.08%), Postives = 201/409 (49.14%), Query Frame = 1
Query: 217 TSVSLSFQLARLLRTTFSCPACPGCAQLVRGPPTRYKYHLALIAVVDKENCTQIAMQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQSHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKTDFFKLLTLGAHMYTYV*DFVFDPRRVQRWASFLHPGIHTINIQHSLHAASGIDQWCLEDGDGKVGDYSRRALRRRGQXXXXXXXXXKANLWGHGPPRAPTDFLAL**SEGQLTGRFRLREGGYATRAMQRLRHAGYVDRGLGGYGLSRSTLWRGICNDNVQGELARMVVEP---------G*RATVLRPHLRRRRWHVDHPDFRQVLRGLARGRPGCRPTVLVRITRTFPDPGGGPQYCHLVALGPDGFVLCTC 1416
T SLS++ T +CP C AQ + PTRYKYHLALI VVDKEN T I QALL++ RTEDF FLFR F+E+ GAQP+VIFTDAD AAMAAI +ECP S +LCLFH+D+NL KHG+GLG+GVLA V + AA A TEE K D F LL G+ MYTY+ D VF P+ V RWA F HPG+ T+ I + S + A++R G K S+ T YA + M D L G + TL G NDNVQ LA + P G + R F ++LR R LVR+T TF G QYCHLVALGPDGF LCTC
Sbjct: 193 TKASLSYRFENGFVKTCACPLC---AQFLGYAPTRYKYHLALIVVVDKENYTHIVFQALLASERTEDFDFLFRAFREMIGGAQPQVIFTDADAAAMAAIQKECPWSRHQLCLFHLDENLRKHGKGLGEGVLAGVIRMFHKAAFAPTEEA----KQDVFNLLAPGSDMYTYMADSVFGPKWVHRWAKFGHPGLPTLGITSTQRVES-------------TNSALKPAMQRSGTMVDVHRAISKKVQ-----------------SDANKT------TSAYAMKDMS--------DEALAAMGYTAHTLATG--NDNVQRLLADLGANPAGAGLLYGTGEEGADITLTTR-----TSIKFFAELLRDQVVDR-------LVRVTNTF---GSQTQYCHLVALGPDGFFLCTC 533 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15800.1 >prot_C-linearis_contig8.15800.1 ID=prot_C-linearis_contig8.15800.1|Name=mRNA_C-linearis_contig8.15800.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=163bp MRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPAback to top mRNA from alignment at C-linearis_contig8:3565171..3568703- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15800.1 ID=mRNA_C-linearis_contig8.15800.1|Name=mRNA_C-linearis_contig8.15800.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3533bp|location=Sequence derived from alignment at C-linearis_contig8:3565171..3568703- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3565171..3568703- >mRNA_C-linearis_contig8.15800.1 ID=mRNA_C-linearis_contig8.15800.1|Name=mRNA_C-linearis_contig8.15800.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at C-linearis_contig8:3565171..3568703- (Chordaria linearis ClinC8C monoicous)back to top |