mRNA_C-linearis_contig8.15710.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI) HSP 1 Score: 236 bits (603), Expect = 8.170e-66 Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = -2
Query: 139 MLRRHFKRRNYFAAATA-PRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 486
MLR+H+K+RNY+AAATA PRPEYRWCYAEQVDQAAPLPDRSNGWRY GPREGETYRRQAVFGAGFRLRLPFPRL PGPGHRWFNSHPLGGDPDLPDF+AWARTMLRRRLVHRDDADA
Sbjct: 1 MLRQHYKKRNYYAAATALPRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLPFPRLCPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADA 117
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.570e-63 Identity = 97/116 (83.62%), Postives = 101/116 (87.07%), Query Frame = -2
Query: 139 MLRRHFKRRNYFAAATAPRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 486
MLRRHFK NY+A TA RPEYRWCYAEQVDQAAPLPDRSNGWRY GPREG+TYRRQAVF G+RLRLPFPRL GPGHRWFNSH LGGDPDL DF+AWARTMLRR LVH DADA
Sbjct: 1 MLRRHFKTTNYYAGGTARRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADA 116
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.150e-56 Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = -2
Query: 139 RHFKRRNYFAAATAPRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 477
RH+K+R+Y+AAATA RPEYRWC EQVD+A P+ RSNGWRY GPREGETYRRQAVFGAGFRL LPFPRL PGPGHRWFNSHPLGGDPDLPDF+AWARTMLRRRLVH DADA
Sbjct: 3 RHYKKRHYYAAATARRPEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADA 115
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5KUG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG2_9PHAE) HSP 1 Score: 142 bits (358), Expect = 2.440e-38 Identity = 65/78 (83.33%), Postives = 68/78 (87.18%), Query Frame = -2
Query: 244 RHFKRRNYFAAATAPRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRW 477
R +K R Y+A TA RPEYRWCYAEQVDQAAP+PDRSNGWRY GPREGETYRRQA FGAGFRLRLPFPRL GPGHRW
Sbjct: 3 RLYKNRRYYAGGTARRPEYRWCYAEQVDQAAPMPDRSNGWRYLGPREGETYRRQAGFGAGFRLRLPFPRLPVGPGHRW 80
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.070e-34 Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = -2
Query: 145 LRRHFKRRNYFAAATAP-RPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDA 483
L++ R N AA+++ YRWCY EQVDQA PL +RSNGWRY GPR G TYRRQAVFG G+R+R+ FP S GPGH+WFNSHPLGGDP+L +F+ WART+LRR +VH DA
Sbjct: 5 LKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPR-GVTYRRQAVFGTGYRIRISFPS-SAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDA 116
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI) HSP 1 Score: 145 bits (366), Expect = 2.020e-34 Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = -2
Query: 139 AAATAPRP-EYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 450
AA ++P YRWCY EQVDQAAPL RSNGWRY GP G TYRRQAVFG GFR+R+ FP SPGPG+RWFNSHPLGGDP+L +F+ WART+L+ +VH DA+A
Sbjct: 7 AAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGP-GGITYRRQAVFGTGFRVRISFPS-SPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEA 109
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE) HSP 1 Score: 144 bits (362), Expect = 7.420e-34 Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = -2
Query: 139 AAATAPRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 450
A +++ YRWCY EQVDQA PL +RSNGWRYRGPR G TYRRQAVFG G+R+R+ FP S GPGH WFNSHP+GGDP+L F+ WAR +L R +VH DA+A
Sbjct: 8 AVSSSRAASYRWCYVEQVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGYRIRISFPS-SAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEA 109
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5L8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I4_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.620e-33 Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = -2
Query: 139 QVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 402
+VDQAAPL RSNGWRYRG REGETYRRQAVFGAG+RLRLP R+ P PGHRWFNSHP GGDPDL DF+A A TML R LVH DADA
Sbjct: 7 EVDQAAPLACRSNGWRYRGEREGETYRRQAVFGAGYRLRLPLHRVYPVPGHRWFNSHPFGGDPDLRDFQALAGTMLCRGLVHPRDADA 94
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE) HSP 1 Score: 133 bits (335), Expect = 2.330e-33 Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = -2
Query: 139 AAATAPRP-EYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAG---------------------FRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 450
AA ++P YRWCY EQVDQAAPL RSNGWR+ GP EG TYRRQAVFG G FR+R+ FP SPGPG+RWF+SHPLGGDP+L +F+ W RT+L+R +VH DA+A
Sbjct: 7 AAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGP-EGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPS-SPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEA 130
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE) HSP 1 Score: 139 bits (350), Expect = 3.310e-33 Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = -2
Query: 139 AAATAPRPEYRWCYAEQVDQAAPLPDRSNGWRYRGPREGETYRRQAVFGAGFRLRLPFPRLSPGPGHRWFNSHPLGGDPDLPDFRAWARTMLRRRLVHRDDADA 450
A +++ YRWCY EQVDQ PL RSNGWRY P G TYRRQAVFG GFR+R+ F SPGPGHRWFNSHPLGGDP+L +F+ WART+L+R +VH +A+A
Sbjct: 9 AVSSSHATSYRWCYMEQVDQDEPLAGRSNGWRYMEP-GGVTYRRQAVFGTGFRIRISF-ASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEA 110 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15710.1 >prot_C-linearis_contig8.15710.1 ID=prot_C-linearis_contig8.15710.1|Name=mRNA_C-linearis_contig8.15710.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp SAKHGPLLVRRLQVQSNPVPANAPCSAAGRWDTEVPRANTHSQSGTGVCVback to top mRNA from alignment at C-linearis_contig8:2783280..2785012+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15710.1 ID=mRNA_C-linearis_contig8.15710.1|Name=mRNA_C-linearis_contig8.15710.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at C-linearis_contig8:2783280..2785012+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2783280..2785012+ >mRNA_C-linearis_contig8.15710.1 ID=mRNA_C-linearis_contig8.15710.1|Name=mRNA_C-linearis_contig8.15710.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig8:2783280..2785012+ (Chordaria linearis ClinC8C monoicous)back to top |