mRNA_C-linearis_contig8.15703.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15703.1
Unique NamemRNA_C-linearis_contig8.15703.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 5.270e-67
Identity = 225/431 (52.20%), Postives = 262/431 (60.79%), Query Frame = 3 
Query:  213 LLAQAECGGGIEGILSSDGTTCCLEACGLCGGSGCSDVEGTLD-TDCCVNDIKDTERTCGVGGVVAPCTIDPDNPLT-------TPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------VPPPGSISTCENGFPGFQTQEACCSEFCGSCGGSGCGALGSADCCVDNIIEGDRVCDVNAFEAPCIIVSLTPSPLAAGQTRAPLMVATPAPFLGPVVPTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAATEAXXXXXXXXXXXXXXXEVP--VEP------AQTPAPTVEVCAEGLEGFRHGIVCCPLECGQCGGSGCDNLPGGATGCCSDAILFEGVRCNGAEVVAPCIIGSVDDVVGAANAETS 1427
            +L +AEC  G+EGILSS+   CC+ ACG+CGGSGCSDVEGT   +DCCV+DI D++ TCGV   VAPC +DPD   T       TPAP XXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXX                            XXXXXXXXXXXXXXXX           P  G+ S CENG+PG+Q+ EACCSEFCG CGGSGCG LGSA CC DNII    VC V+  EAPCII++ TP+PLA G T      AT A           XXXXXXXXXXXXXXXXXXXXXXX      V+  +                 VP  V P        TPAP+   C +G+EGFRHG+ CC + CGQCGG+GC+NL GGA+ CCS  +L     C+ + V APC++G V  V GAA+A+T+
Sbjct:    1 MLVEAECVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXXIAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVTAP----AT-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGV-APCVLGPVSQVDGAADADTT 425
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.060e-53
Identity = 223/427 (52.22%), Postives = 256/427 (59.95%), Query Frame = 3 
Query:  297 LCGGSGCSDVEGTLDTDCCVNDIKDTERTCGVGGVVAPCTIDPD------------------------------------NPLTTPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPP-PGSISTCENGFPGFQTQEACCSEFCGSCGGSGCGALGSADCCVDNIIEGDRVCDVNAFEAPCIIVSLTPSPLAAGQTRAPLMVATPAPFLGPVVPTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAATEAXXXXXXXXXXXXXXXEVPVEPAQ-------------TPAPTVEVCAEGLEGFRHGIVCCPLECGQCGGSGCDNLPGGATGCCSDAILFEGVRCNGAEVVAPCIIGSVDDVVGAANAETS 1427
            +CGGSGCSDV+GT  ++CCV+ I D++ TCGV   VAPC +DPD                                       T P P       XXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V P  G+ S CENG+ G+Q  EACCSEFCG CGGSGCG LGSA CC DNII   +VC V+  EAPCII++ TP+PLA G+T APL   T             XXXXXXXXXXXXXXXX     XXXXXXX    +                 E P E                TPAP+   CA+G+EGFRHG+ CC + CGQCGG+GC+ L GGA  CCS  +L     C+     APC++G V +V GAA+A+T+
Sbjct:    1 MCGGSGCSDVDGTRGSECCVDHILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAXXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGE-APCVLGPVSEVDGAADADTT 426
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.390e-15
Identity = 130/436 (29.82%), Postives = 162/436 (37.16%), Query Frame = 3 
Query:  231 CGGGIEGILSSDGTTCCLEACGLCGGSGCSDVEGTLDTD-CCVNDIKDTERTCGVGGVVAPCTIDPDNPLTTPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPPGSISTCENGFPGFQTQEACCSEFCGSCGGSGC----GALGSADCCVDNIIEGDRVCDVNAFEAPCIIVSLTPSPLAAGQTRAPLMVATPAPFLGPVV---------PTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAATE------AXXXXXXXXXXXXXXXEVPVEPAQ---TPAPTVE---------------------------VCAEGLEGFRHGIVCCPLECGQCGGSGCDNLPGG--ATGCCSDAILFEGVRCNGAEVVAPCII 1382
            C  GI GI S  G +CCL  CG CGGS C++    L  D CC ++I++    C +  + APC +D   P  +P      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                          TC NG PG Q+  ACC   CG+CGGS C    G LG+ +CCV +I+E    C + A EAPC I    P+P       A                        PT +                             V   +                      E P   A    TPAP  E                           VC+ G+ G + G+ CC  +CG+CGGS CD   GG  A  CC   I   G  C+  ++ APC++
Sbjct: 1165 CSNGIPGIQS--GVSCCLAECGECGGSDCAEYGDGLGADNCCQSNIEEYGELCSIK-LEAPCVVDDSAPAPSPVTMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------TDTCSNGIPGIQSDNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGEPCSI-ALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVLADVVLTPAPVAEPTXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQSGVSCCLADCGECGGSDCDEFGGGLGADNCCESDIEEYGELCS-IKLEAPCVV 1539
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.270e-9
Identity = 71/234 (30.34%), Postives = 80/234 (34.19%), Query Frame = 3 
Query:  726 TCENGFPGFQ-TQEACCSEFCGSCGGSGCGALGSAD------CCVDNIIEGDRVCDVNAFEAPCIIVSLTPSPLAAGQTRAPLMVATPAPFLGPVVPTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAATEAXXXXXXXXXXXXXXXEVPVEPAQTPAPTVEVCAEGLEGFR-HGIVCCPLECGQCGGSGCDNLPGGATG-----CCSDAILFEGVRCNGAEVVAPCIIGS 1388
            TC NG  G   +   CCS  CG CGG GC   GSA+      CC   I   D  CD    EAPCII          G      M+  P+                                        V   +A                           +VE C+ GLEG    G VCCPL+CGQCGG GC    G A G     CCS  I      C+     APCIIGS
Sbjct:  240 TCSNGLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCD-ETNEAPCII----------GSRPGAKMIHVPS---------------------------------LHVIYDRVTHKQACLANVYLFFLGQ---------------SVETCSNGLEGIDGSGGVCCPLDCGQCGGKGC-YTSGSANGLGGDFCCSGGIKASDEYCDETNE-APCIIGS 412
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.800e-8
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 3 
Query: 1179 TPAPT-VEVCAEGLEGFR-HGIVCCPLECGQCGGSGCDNLPGGATG-----CCSDAILFEGVRCNGAEVVAPCIIGS 1388
            TP+PT    C+ GLEG   +G+VCCPL CGQCGG+GC N  G A G     CC  +I   G  C+     APCIIGS
Sbjct:  261 TPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGC-NTSGAAAGLDGSSCCGGSIKASGKYCDETND-APCIIGS 335
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.110e-8
Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = 3 
Query: 1194 VEVCAEGLEGFR-HGIVCCPLECGQCGGSGCDNLPGGATG-----CCSDAILFEGVRCNGAEVVAPCIIGS 1388
            VE C+ GLEG   +G+VCCPLEC QCGG+GC  + G A G     CC   I   G  C+     APCIIGS
Sbjct:  469 VETCSNGLEGIEGNGVVCCPLECNQCGGTGC-TMSGSAAGLGSESCCGGGIKASGAYCDDTNE-APCIIGS 537
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.150e-8
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 3 
Query: 1203 CAEGLEGFR-HGIVCCPLECGQCGGSGCDNLPGGATG-----CCSDAILFEGVRCNGAEVVAPCIIGSVDD 1397
            C+ G+EG   +G+VCCPLECGQCGG+GC +  G A+G     CC   +   G  C+     APCI GS DD
Sbjct:  119 CSGGIEGIDGNGVVCCPLECGQCGGTGCSSA-GAASGLGSESCCESGVDSSGRYCD-VTGEAPCIYGSPDD 187
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.940e-7
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 3 
Query: 1203 CAEGLEGFRHGIVCCPLECGQCGGSGCDNLPG----GATGCCSDAILFEGVRCNGAEVVAPCIIGSVDD 1397
            C +G+EG    +VCCPLECGQCGG+GC         GA  CC + +   G  C+     APCI GS  D
Sbjct:  317 CRDGIEGIDGRVVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGE-APCIYGSAPD 384
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.250e-7
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 3 
Query: 1203 CAEGLEGFRHGIVCCPLECGQCGGSGCDNLPG----GATGCCSDAILFEGVRCNGAEVVAPCIIGSVDD 1397
            C +G+EG    +VCCPLECGQCGG+GC         GA  CC + +   G  C+     APCI GS  D
Sbjct:  339 CRDGIEGIDGRVVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGE-APCIYGSAPD 406
[Close]
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Match: A0A835YLW4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.350e-7
Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 3 
Query: 1203 CAEGLEGFRHG--IVCCPLECGQCGGSGCDNLPGGATGCCSDAILFEGVRCNGAEVVAPC 1376
            C   L G   G   VCCP  CG+CGG+GC N PGGA+ CC+  I    + C G  V APC
Sbjct:   77 CGMDLSGILSGDKSVCCPARCGKCGGTGCQNFPGGASQCCTTNIQATDLLCAGTAVPAPC 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JJ70_9PHAE5.270e-6752.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G7_ECTSI2.060e-5352.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ68_ECTSI4.390e-1529.82WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZG5_9PHAE3.270e-930.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE2.800e-850.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV4_ECTSI3.110e-850.70Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JGP9_9PHAE7.150e-847.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN04_ECTSI2.940e-744.93FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FN07_ECTSI3.250e-744.93FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835YLW4_9STRA6.350e-748.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2699739..2706700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002960.1
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons9
Model size1452
Cds size1380
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15703.1prot_C-linearis_contig8.15703.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2699739..2706629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930554.1391768-CDS-C-linearis_contig8:2699738..26998001622930554.1391768-CDS-C-linearis_contig8:2699738..2699800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2699739..2699800 -
1690881129.6069217-CDS-C-linearis_contig8:2699738..26998001690881129.6069217-CDS-C-linearis_contig8:2699738..2699800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2699739..2699800 -
1622930554.1566603-CDS-C-linearis_contig8:2700618..27007431622930554.1566603-CDS-C-linearis_contig8:2700618..2700743Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2700619..2700743 -
1690881129.6247103-CDS-C-linearis_contig8:2700618..27007431690881129.6247103-CDS-C-linearis_contig8:2700618..2700743Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2700619..2700743 -
1622930554.1755812-CDS-C-linearis_contig8:2700990..27010541622930554.1755812-CDS-C-linearis_contig8:2700990..2701054Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2700991..2701054 -
1690881129.6448112-CDS-C-linearis_contig8:2700990..27010541690881129.6448112-CDS-C-linearis_contig8:2700990..2701054Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2700991..2701054 -
1622930554.2024214-CDS-C-linearis_contig8:2701946..27023511622930554.2024214-CDS-C-linearis_contig8:2701946..2702351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2701947..2702351 -
1690881129.660837-CDS-C-linearis_contig8:2701946..27023511690881129.660837-CDS-C-linearis_contig8:2701946..2702351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2701947..2702351 -
1622930554.2160196-CDS-C-linearis_contig8:2702748..27028261622930554.2160196-CDS-C-linearis_contig8:2702748..2702826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2702749..2702826 -
1690881129.67122-CDS-C-linearis_contig8:2702748..27028261690881129.67122-CDS-C-linearis_contig8:2702748..2702826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2702749..2702826 -
1622930554.2295623-CDS-C-linearis_contig8:2703221..27036021622930554.2295623-CDS-C-linearis_contig8:2703221..2703602Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2703222..2703602 -
1690881129.682597-CDS-C-linearis_contig8:2703221..27036021690881129.682597-CDS-C-linearis_contig8:2703221..2703602Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2703222..2703602 -
1622930554.2462175-CDS-C-linearis_contig8:2704099..27042071622930554.2462175-CDS-C-linearis_contig8:2704099..2704207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2704100..2704207 -
1690881129.6938012-CDS-C-linearis_contig8:2704099..27042071690881129.6938012-CDS-C-linearis_contig8:2704099..2704207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2704100..2704207 -
1622930554.2628384-CDS-C-linearis_contig8:2704677..27048051622930554.2628384-CDS-C-linearis_contig8:2704677..2704805Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2704678..2704805 -
1690881129.7056534-CDS-C-linearis_contig8:2704677..27048051690881129.7056534-CDS-C-linearis_contig8:2704677..2704805Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2704678..2704805 -
1622930554.2824576-CDS-C-linearis_contig8:2706600..27066291622930554.2824576-CDS-C-linearis_contig8:2706600..2706629Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2706601..2706629 -
1690881129.7177339-CDS-C-linearis_contig8:2706600..27066291690881129.7177339-CDS-C-linearis_contig8:2706600..2706629Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2706601..2706629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930554.3033438-UTR-C-linearis_contig8:2706629..27067001622930554.3033438-UTR-C-linearis_contig8:2706629..2706700Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2706630..2706700 -
1690881129.7330186-UTR-C-linearis_contig8:2706629..27067001690881129.7330186-UTR-C-linearis_contig8:2706629..2706700Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2706630..2706700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15703.1

>prot_C-linearis_contig8.15703.1 ID=prot_C-linearis_contig8.15703.1|Name=mRNA_C-linearis_contig8.15703.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=460bp
MIMDGPSTRRYRSGRARASGVGMTKTTTRLRRLVLVLVVAVAWRPSTLLA
QAECGGGIEGILSSDGTTCCLEACGLCGGSGCSDVEGTLDTDCCVNDIKD
TERTCGVGGVVAPCTIDPDNPLTTPAPTAATAEPTVEAQATAAPVAATVA
PVVAPTTAPVAAPTAAPVAPPVAPPVAAPTAAPVAPPVAPPVAVVVQTTA
PVQAPIVDPDVPPPGSISTCENGFPGFQTQEACCSEFCGSCGGSGCGALG
SADCCVDNIIEGDRVCDVNAFEAPCIIVSLTPSPLAAGQTRAPLMVATPA
PFLGPVVPTPAPVPPVAAPVAAPVAAPVAAPVAAPVAAPAVAATEAPVSR
EIEAPTAAPEAEVPVEPAQTPAPTVEVCAEGLEGFRHGIVCCPLECGQCG
GSGCDNLPGGATGCCSDAILFEGVRCNGAEVVAPCIIGSVDDVVGAANAE
TSAACNVWIG
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mRNA from alignment at C-linearis_contig8:2699739..2706700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15703.1 ID=mRNA_C-linearis_contig8.15703.1|Name=mRNA_C-linearis_contig8.15703.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6962bp|location=Sequence derived from alignment at C-linearis_contig8:2699739..2706700- (Chordaria linearis ClinC8C monoicous)
AACGGCTCCTATGCCATAGGCTCTCAGAGATCCTTCCCTGACATACCGAC
GGTGCCTAAAGCGAGGATAAAATGATAATGGATGGACCCTCCACACGTCG
GTGAGATAGTTGCTGCTTTTTTGCCGCCTACGAGAGAGAGCAGGCACGTT
CCGGAATCCCCGAAATGATGATTGTTCCAACAAAGGATAAGGCTCGCACC
CTCATCTTATTCCTTACAGTACTTCTATCTCCGGCGATGGCGATGGGACG
AACCCGAACTACCGAAGAGAGCGATCAGCGCGCGAAGAATACCACCCTTT
CTCTTTGCCCCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCGT
GCACACTGGCTCAGCTGTAGAGGCAGACCTACCACACGAGAATCAGACGC
TGAAAACCAGAGGTGTCAGAATTTTCGAATTTTCATCCGACCCAACACAC
CCCAGCGGCCCGCCTACACGCAAGAAATTAAGTGTGTGTGTACGTGTGTT
TTCGTCCCATTTATTTTGGCGACAGCAGTCCCTTTCCGATCAAGGCGAGA
TGTGTACTACGCGTTGCGGTGTATTTAGAGTACTACACCTGTTCAGTGTA
TTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGGTAGTCTAAACA
CTCGGGCTTTCTTCTTTTTCTGTTTCTTTTTTTGCCCCACCTTCCTCCTG
CGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTTCC
CTCGTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTA
TGTTATCGCTTTCACCTGCAAAGTCGCAAAATAATCACCTTTGCTTGGAA
TTGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTATAAT
AGTCCACCGGGGCGACCGGCGTACATATTACGAAAAGAGAAAAAAGACTA
CCAGGGGGTTCGCAGACCCTACCCTAACCCTAACCCTAACCCGAACTCCC
CGATTCGATATTGCACTTTATCCAAGTGGTTTGCTGAACGAAAAAAATTG
CGTAGACTACTGACCCCAGCGGATAGATAGATGCCAAGAAGGAAGGTCTG
GGGAGGTGTAGGTAGGCCCTGTGTTCATCGTTCGTCCAACCCTAACCTTA
TTGGCCGAGTACATCGAAACCTTTACATGTATCTTGCGTCATGAAGAAGT
GTTGGCAAGGACTCAGAGCATGTCTTTCGACAAAGCTCGATCGCACGTCA
AACCTAGACTAAATACTTCAGTATATAGTCTAGTCTACGGAGAGTATATT
TTTTCCTCATCAGGAGGTAGATTTTATACTGGAGGCAAGTAATTTGCTTT
TTGAGGGGCATTGGCCCTCGACCACGGCAGGTGGCTGACCTCCCGTCGCC
AGGTCACCAGTCACCGCCTCTTCCTATTTTCTCTGGTCGTATCCATTGCA
GGTCATTGCAAGGGCAGTCGAAATCTCATTTGTTTTTCGTATTTGAAAAA
AATCAAAGCTGCATGCACTGCTGTTACTGCTGTACGAAGTATACCTACAT
ATCCGCCGTCTGTAAGTGTCTGTTGCTGCAGTACAGCACACGACGTACTA
CTGTAGTAGTGTGCAAAGCCATCCCACCCTGCCGTGCAACTCTAACTCTA
CACATGTGACCGATTTTTGCGCTGTCGTTTGGCCCCCAAGACCCTCCCCT
GGGTTCACCACAGCTCCCGGAACTGCTGCCGACTCTGTCATTGAACACAA
CACTACTCCCTGCGATCAACACGCCTATTTAGTCTCAACTCTAGACGTCC
CCCAAGCATGTTCTTACACCAGGTCGCCGTTCACCCCGCCGCTATCTGTA
TTCATGCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTATGCAGGTATC
GCTCCGGGCGAGCGCGCGCGAGCGGTGTCGGCATGACGAAGACGACAACG
CGATTGCGGCGCTTGGTGCTTGTGTTGGTGGTAGCGGTGGCGTGGCGGCC
GAGTACGCTGCTGGCTCAAGCAGGTGAGCTTACTTGTACACACGACAGCG
CGGGGGCGGTGGCGGGAGGGGGGGGGGACGTGCCTGGTGACGGGTATCCG
TCTTGTGTGTGTGTTAGTTAAGCCCTTCGTGATTTGCAAAAAGGAAGTGA
TGCCGGAGTCAGTTTGGCTACGTGTCGTGTTCTCCGGGGGACAGACGGCA
TGGCATCGATGTCTCGTCTGTGATGGCGCTCATTTTCGCATTTTCGAATT
TTCTACTGTCGTGTCGACCCTTGCGAAGGGAAGGGACTCTCAAGCCCTGG
AGGCAAGGCCCCCTCCCCCCCGCGCTGGTCAACCCAGCAACGAAATGAGT
CAGCATACCATATTTTATCATATTTGCTGGGAACAATACCGGGAGAGCAG
TCGATTCCGGGTAAATTAACTTACCACACCGGGCCCGTTCACTAACTGAT
GGATTTGATTGATTTCCTTGATCGATCGATGCGCTACGAGCAGAGTGCGG
GGGCGGGATCGAAGGGATCTTGTCCAGCGATGGGACGACGTGCTGCTTGG
AGGCGTGCGGGCTATGCGGCGGATCGGGCTGCTCTGACGTGGAGGGCACA
TGTGAGAGAGGGGCTTGGGTTTTCGCTCTGCCGGCTTCCTCCTCCAACCA
AAGTCAAAAAGTCGGGTCAAGTCAAATGTCCTGTTTCTCCTCTTCTTCGG
CATCAGTTTTCGTCAGACCTCTCTCTCTCTCTATCTCTCTCTCACACACA
CACACACACACACACACACACACGTGCACGTGCACGTGCACGCGCGCGGT
CCCACGTCGAGGGTCATTTGGTACTACAGAGAGCCGCGCTGAGTTATTTC
CACCAGTAGGTCGAGATCGAGGTCGAGGCGGCGGTGTTCACAGATGCTGG
AAACAAGACGACAAAAAGAAAAATGACGGCTCGGCCCCATCGTACAATAC
CACCGCCGCATGCGAGCGAGAAGTGCGATGCACCCTCCCTCCCTCCCTCC
CTCCCTCCGTCTGCTACTGACTCTCCTCCCTCCACCTCTGCCGACCCCAC
CCCCGAACCAACAACTAAACGAACCAACAAACGAACGAACGAGAGCAGTG
GACACCGATTGCTGCGTGAACGACATCAAGGACACCGAGCGAACGTGCGG
CGTCGGCGGCGTCGTGGCCCCGTGCACGATCGACCCCGACAACCCCCTCA
CGACTCCGGCGCCCACCGCCGCGACGGCGGAGCCGACGGTCGAGGCTCAG
GCAACCGCGGCGCCGGTTGCGGCGACCGTGGCGCCGGTTGTCGCGCCCAC
CACTGCTCCCGTGGCCGCTCCCACGGCGGCTCCCGTGGCCCCTCCGGTGG
CCCCTCCCGTGGCCGCTCCCACGGCGGCTCCCGTGGCCCCTCCGGTGGCG
CCTCCCGTCGCTGTTGTTGTTCAAACAACTGCTCCGGTGCAGGCTCCGAT
CGTTGACCCGGATGTTCCGCCTCCTGGATGTGAGTGTGGTGTGGTGTGGT
GTGGTTGTTGCTTTGGGGGCTGGATGGGCATATGATACGTACGAGCGCAT
TTTTTTTTGTTCCTTTCCGGGTGCTTGGTGGGTTGTATAGGTGAAGATCG
TGTGCCGTTTTTTTTGACAGCGCTCGTGTCTCCACACTGCTGTGGAGAGC
AGGCAGGCAAACTCTTGGTGAACTCGGTTCGTCAGCGCGGTCGCCAAGTC
TCGCTGTCGGCTTTTGGGCGGAGAAGATACAATAGCAGCGCCGTTTTGAT
GGGTGCTCTTGCTTCAAGTGCCTGTACGCCCCCAATCGTTTCGCCGCCGT
TTTTCATCGATCTCCGAACCCCGTCCCCCCCGGACACCTGGTGTGCTGTG
CCGCCGCCGCTGTGATGTGTGCAGCCATATCTACCTGCGAGAACGGCTTC
CCAGGATTCCAGACCCAGGAGGCCTGCTGCTCGGAATTCTGCGGGTCGTG
CGGTAGGTTCGACGGTTTCACCGTACCATCAAATTTGTATTAGTTCTACG
TGTACGCGTGTTTTACGAGCTTCGCGCACGGAGCAAGCCAAGATGCCGGC
GTGGGGACCTCGGGGAGTTGTCGATTCTGGGCGGATGAGAGCGAGTTCAC
TGGTTCGCAGCTATTATATTACGTGAATATCAATATTGTACTTGTAGTGA
CAACGAAGTAGAGCAGCACCTCAAGTACTCTCAAGTGTCACGTCCCCCCG
CAAGCACACCCCGCAGCTTTGGCCCCCCACGCACCGGCCCACACTCATGC
TCAAGCCGCCACAAACCGCTACAACCCCCCCCCGACTCCGCGCACCCCCC
CCCCGCCCCGCAACACTCCCCCCCCACACACACACCATGCAAAAAACAGG
CGGTTCCGGGTGCGGGGCCCTAGGATCCGCCGACTGCTGCGTCGACAACA
TCATCGAAGGGGACCGCGTCTGCGACGTCAACGCCTTCGAGGCCCCGTGT
ATCATCGTCTCCCTCACTCCGTCCCCGCTGGCGGCGGGGCAAACCCGTGC
GCCGCTGATGGTCGCGACGCCCGCGCCCTTCCTCGGCCCCGTGGTGCCTA
CACCGGCACCGGTGCCGCCGGTGGCGGCTCCGGTGGCGGCTCCGGTGGCG
GCGCCGGTGGCGGCTCCGGTGGCGGCGCCGGTGGCGGCGCCGGCGGTGGC
GGCGACGGAAGCTCCGGTGTCCCGCGAGATCGAGGCGCCCACGGCGGCGC
CGGAGGCGGAGGTGCCTGTCGAACCTGCGCAGACACCTGCTCCGACGGTC
GAAGGTGTGGTGGTGTGTGGTTTTTGCTTTCGGCCTTGTTATTTGCGCGT
AAGCGGTGCTTTTTTGGGCGTTTTGTCTTGTCTGTTTCGTGTCTTGTCTT
GTCTTGTCTTGTCTTGGCTTGCTACAATACCCCTGCTGCCTCTTTTCGTT
TGCCCAGCTATTTTCTGTTGTCTGTTGTCTCCTGCATGCAACTACTACTG
TTGTCTGCGATGTCCCTGCCTTCTCGAGCACCTGACCGCCGTCTTTGGGT
GTTTCGAAATCGCCACACAAAACGCATACTGGTATATCATATGAGGGCCG
TCCTTATCGAGCGAAAAAAAATCACGGATTCGTGAAAAATTCCGCCGCGT
TCTTATCGCATATCCCCTCTGGTCCTCTGCTATTGCGACTACCCTCTCGT
CTAGCCTCACCGAAGGACTTAAGCAACATGTTGCACACTACTCGCCGATA
GTACGATAGGCTAGCTGTTTCCGACAGAAGGAATTAACCTCTGGCATGCC
CTATGAGAGGTGATATCGTGAAGTTGATCATCGTGTTGGACTTATTTCGG
TCGCTTTGGCGGGCACAGAGCAGCTCATCCCACAACAACAGCAAAACCAT
CGACTCGTGACATTTTTTTTTGTCGGTAGCGGCCTGTGACTGACCCTCTC
AGGGGTTGGGACAAGTTTTGCACACTTTTGTGCGTAAGAGCAGCCCTCCT
ACCGCGTCTGCCCGATCCCTCCTCTGTTTCCTCGGATTCGTGAATCGAAC
AGCCGCGTTTTTTTCGCCGCCCTTGTTTTCCTCGGATTCGAGGAAAATAA
ATTCACGAATTCACGAATCCCGTGAAAAAACTTGTTCGATAAGAATGGCC
CTGATACGTTTCGCGCGGTCGTTTTTTTGGTGTTTTGTTTCCTCAGTCTG
CGCCGAAGGCTTGGAGGGCTTCCGACACGGGATCGTTTGCTGTCCTCTCG
AATGCGGCCAGTGAGTGCAATCGTAGATCAATCGTAGATCAATCGTAGAT
CGTATGGTAGCACATATAGTAGTACATACTCCCATCGCGTTTGGTTTGTC
CTTTTGAGTTTTTTTTGTTCACCGGGGTTTCGGCAGCTATTAAATATTTC
TCTGATGTTGTTTTGTTTAGCCACCGGTCTTGTCTTCCAAGTACACGCGT
AAATGTGTGGCTATTTGTTCGGTGTAAACTAATAATACGCTACTTTTTGA
TCTGCAGGTGCGGAGGCTCGGGCTGCGACAACCTTCCTGGTGGCGCAACG
GGTTGCTGCTCGGATGCCATCCTTTTCGAGGGCGTGAGGTGCAACGGCGC
CGAGGTTGTCGCGCCTTGCATCATTGGCTCAGGTACGTATCGTATGTATG
ATGCGCGCTCTTTTGCCGTCGATGTCGATGGCTACTTGCCGCAGAGTGAA
GCTGGAGGCGGAGCGAGGGGGTCGGGGGACGGAGCGGGGGGGGGGTGCAC
GCTGGCTTGTTCTTGGGTTGCTCGCTGCTCTTGGCCTCTCTCTTTTTTTT
TGGCATGCTTCAATAGTTACGGGCTGTGGAGTCGCAAGTTCTTCTTCCAA
CTCTTCATTTCTGACCACAACCGTAGTCCTAGCTCCTGGATCCAAGTGGA
CTTGGCGGCCTGGCCTCACCCTCACTTGGTATTTTTGGTCGCCCATCGCT
CTTCATGGTTCATGAGGGCCAAAGGGGGAGCTCTTACCTCACCTCACCTC
ACCTGACCTCGAACCCATTGCCATTGCCATCGCCGGCCACCTCAGATCGA
TCGTTTGTACTGCATTCCATCGAAGCTTGCTCGAATCCCGCCGTGCGGCG
CGACCCTTCTCTGTGCGCCCGTTACTTACCCGGTTGCATTACCGTTACAT
TACCGTTACAAAACCCGTACAGCTTGTTGGCTCTCTGCGAGCCGGTGACC
TCTCGGTCGGGCACGCGCTGCGTAACCCTTGTGGTGTGCTCGAGTGGTGC
GGTGCGGTGCAGACACGAAAACGCCAAGAAAAGGTCTTGTAAACTGTCTG
TAAACCCTACTTTGAACAAACCCTCCCGGCCCACCCGCACGCCCGCGCGC
GCGACTCTTTCTTTCTTGCTCCGTCGTTTTGATTTGCCGGTCCGCCCGAC
TGACTGCTGCCGAAACGGTTTTTCAACATCCCAAACAAAACCCCAACTAG
TCGACGACGTGGTGGGGGCCGCTAACGCCGAGACGAGCGCGGCCTGCAAC
GTATGGATAGGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:2699739..2706700-

>mRNA_C-linearis_contig8.15703.1 ID=mRNA_C-linearis_contig8.15703.1|Name=mRNA_C-linearis_contig8.15703.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2760bp|location=Sequence derived from alignment at C-linearis_contig8:2699739..2706700- (Chordaria linearis ClinC8C monoicous)
ATGATAATGGATGGACCCTCCACACGTCGATGATAATGGATGGACCCTCC
ACACGTCGGTATCGCTCCGGGCGAGCGCGCGCGAGCGGTGTCGGCATGAC
GAAGACGACAACGCGATTGCGGCGCTTGGTGCTTGTGTTGGTGGTAGCGG
TGGCGTGGCGGCCGAGTACGCTGCTGGCTCAAGCAGGTATCGCTCCGGGC
GAGCGCGCGCGAGCGGTGTCGGCATGACGAAGACGACAACGCGATTGCGG
CGCTTGGTGCTTGTGTTGGTGGTAGCGGTGGCGTGGCGGCCGAGTACGCT
GCTGGCTCAAGCAGAGTGCGGGGGCGGGATCGAAGGGATCTTGTCCAGCG
ATGGGACGACGTGCTGCTTGGAGGCGTGCGGGCTATGCGGCGGATCGGGC
TGCTCTGACGTGGAGGGCACATAGTGCGGGGGCGGGATCGAAGGGATCTT
GTCCAGCGATGGGACGACGTGCTGCTTGGAGGCGTGCGGGCTATGCGGCG
GATCGGGCTGCTCTGACGTGGAGGGCACATTGGACACCGATTGCTGCGTG
AACGACATCAAGGACACCGAGCGAACGTGCGGCGTCGGCGGCGTCGTGGC
CCCGTGCACGATCGACCCCGACAACCCCCTCACGACTCCGGCGCCCACCG
CCGCGACGGCGGAGCCGACGGTCGAGGCTCAGGCAACCGCGGCGCCGGTT
GCGGCGACCGTGGCGCCGGTTGTCGCGCCCACCACTGCTCCCGTGGCCGC
TCCCACGGCGGCTCCCGTGGCCCCTCCGGTGGCCCCTCCCGTGGCCGCTC
CCACGGCGGCTCCCGTGGCCCCTCCGGTGGCGCCTCCCGTCGCTGTTGTT
GTTCAAACAACTGCTCCGGTGCAGGCTCCGATCGTTGACCCGGATGTTCC
GCCTCCTGGATTGGACACCGATTGCTGCGTGAACGACATCAAGGACACCG
AGCGAACGTGCGGCGTCGGCGGCGTCGTGGCCCCGTGCACGATCGACCCC
GACAACCCCCTCACGACTCCGGCGCCCACCGCCGCGACGGCGGAGCCGAC
GGTCGAGGCTCAGGCAACCGCGGCGCCGGTTGCGGCGACCGTGGCGCCGG
TTGTCGCGCCCACCACTGCTCCCGTGGCCGCTCCCACGGCGGCTCCCGTG
GCCCCTCCGGTGGCCCCTCCCGTGGCCGCTCCCACGGCGGCTCCCGTGGC
CCCTCCGGTGGCGCCTCCCGTCGCTGTTGTTGTTCAAACAACTGCTCCGG
TGCAGGCTCCGATCGTTGACCCGGATGTTCCGCCTCCTGGATCCATATCT
ACCTGCGAGAACGGCTTCCCAGGATTCCAGACCCAGGAGGCCTGCTGCTC
GGAATTCTGCGGGTCGTGCGCCATATCTACCTGCGAGAACGGCTTCCCAG
GATTCCAGACCCAGGAGGCCTGCTGCTCGGAATTCTGCGGGTCGTGCGGC
GGTTCCGGGTGCGGGGCCCTAGGATCCGCCGACTGCTGCGTCGACAACAT
CATCGAAGGGGACCGCGTCTGCGACGTCAACGCCTTCGAGGCCCCGTGTA
TCATCGTCTCCCTCACTCCGTCCCCGCTGGCGGCGGGGCAAACCCGTGCG
CCGCTGATGGTCGCGACGCCCGCGCCCTTCCTCGGCCCCGTGGTGCCTAC
ACCGGCACCGGTGCCGCCGGTGGCGGCTCCGGTGGCGGCTCCGGTGGCGG
CGCCGGTGGCGGCTCCGGTGGCGGCGCCGGTGGCGGCGCCGGCGGTGGCG
GCGACGGAAGCTCCGGTGTCCCGCGAGATCGAGGCGCCCACGGCGGCGCC
GGAGGCGGAGGTGCCTGTCGAACCTGCGCAGACACCTGCTCCGACGGTCG
AAGGCGGTTCCGGGTGCGGGGCCCTAGGATCCGCCGACTGCTGCGTCGAC
AACATCATCGAAGGGGACCGCGTCTGCGACGTCAACGCCTTCGAGGCCCC
GTGTATCATCGTCTCCCTCACTCCGTCCCCGCTGGCGGCGGGGCAAACCC
GTGCGCCGCTGATGGTCGCGACGCCCGCGCCCTTCCTCGGCCCCGTGGTG
CCTACACCGGCACCGGTGCCGCCGGTGGCGGCTCCGGTGGCGGCTCCGGT
GGCGGCGCCGGTGGCGGCTCCGGTGGCGGCGCCGGTGGCGGCGCCGGCGG
TGGCGGCGACGGAAGCTCCGGTGTCCCGCGAGATCGAGGCGCCCACGGCG
GCGCCGGAGGCGGAGGTGCCTGTCGAACCTGCGCAGACACCTGCTCCGAC
GGTCGAAGTCTGCGCCGAAGGCTTGGAGGGCTTCCGACACGGGATCGTTT
GCTGTCCTCTCGAATGCGGCCATCTGCGCCGAAGGCTTGGAGGGCTTCCG
ACACGGGATCGTTTGCTGTCCTCTCGAATGCGGCCAGTGCGGAGGCTCGG
GCTGCGACAACCTTCCTGGTGGCGCAACGGGTTGCTGCTCGGATGCCATC
CTTTTCGAGGGCGTGAGGTGCAACGGCGCCGAGGTTGTCGCGCCTTGCAT
CATTGGCTCAGGTGCGGAGGCTCGGGCTGCGACAACCTTCCTGGTGGCGC
AACGGGTTGCTGCTCGGATGCCATCCTTTTCGAGGGCGTGAGGTGCAACG
GCGCCGAGGTTGTCGCGCCTTGCATCATTGGCTCAGTCGACGACGTGGTG
GGGGCCGCTAACGCCGAGACGAGCGCGGCCTGCAACGTATGGATAGGATC
GACGACGTGGTGGGGGCCGCTAACGCCGAGACGAGCGCGGCCTGCAACGT
ATGGATAGGA
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