mRNA_C-linearis_contig8.15684.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15684.1 vs. uniprot
Match: D8LLV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV7_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 9.590e-132 Identity = 364/664 (54.82%), Postives = 408/664 (61.45%), Query Frame = 1
Query: 409 SGTASRTICLRTLRGSTSSGALSRLAGWGGTLAAAPAXXXXXXXVAGAMEHGAPPEAAPGQTGAVAVA--VGAGGGLGVLPSASKVVDLREVKKVKPGPLASAAXXXXXXXEDSDGPEEGEG-PVKIDISAGKRMIEFQLKQNAAEEKRESARLKSERERADAAAAEGSQRMLAQVNARIEAQRRVGG-----GVLGSWGS--ESAADHDGGXXXGNAVHLIGPSQMRNLAEKHGIVVTFVDDGAASGVAQVRA-LARAHGIRIQVWGQDGDGDEAPLGGDCVGKATTPPPILSSLRARRTAPARRSPSPVPEALVKAPPRKTPAAPA--GGMFSGPARMMRRALEASGGCVPSAKDASPKSGGGG--AASPRSKALCVVPACLPPSLELCFLVSCSVPERRLGSAVHSWRIVLSGGRGTRSGRGGGVARPRPG----SGGSAGSVGAASNGAAKGGVVVGPDSRDARSEGEGCSSKGXXXXXXXXXXXXXXXXXXNTPMVS-----GRKRREAPGDTDQAGEKERRGGHAEGTTS--KRAVGEGDVDGGGGSXXXAVGGRKEGRLGHRNAGPAA---GEGGATPSTRGSKEA-TTPRIQNGVPKRMRLVAPGGAVVSQAADTPSTHKSGRRTGSGGAAFGPGNNNLFKGAMAGIMGRGKRPAP 2310
S ASRTICLR L G+ G L LAGWGG AA XXXXXXX A GQ AV V VG GGGLGVLPSA+KVVDLREVKKVKPGPLA++A +DS+G EEG G PVKIDISAGKRMIEFQLKQNAAEEKRE+AR+K+E+ RADAA AEGSQRMLAQVNAR+EAQRR G GVLGSWG+ E+AA D VH I SQ+RNLAEKHGIVV FVDDGAASGV+Q + HG + G G G + TPPP LSSLR + APARRSPSP P KA PRK A PA GG+FSGPARMMRRALEASGGCVPS KD SP + GG A++P PP + +++ + +G+ + R V SGG + SG+G G RPRPG S S G+ AASN A KG V GP SR ARS GE XXXXXXXXXXX P S GRKRR G KRAV +GGGGS GGR EGRLGHR GP+ GEG A S R S EA TP +Q+ PKRMRLVAP G VVSQA+ TP+T KSGRR +GGA +G GNNNLFKGAMAGI+GRGKRP+P
Sbjct: 104 SDAASRTICLRLLPGTKPIGPLPSLAGWGGVTKAAXXXXXXXXXXXXXXXXXXXXXAVSGQADAVLVGEKVG-GGGLGVLPSANKVVDLREVKKVKPGPLAASAPVP----DDSEGEEEGAGGPVKIDISAGKRMIEFQLKQNAAEEKREAARVKNEKGRADAAIAEGSQRMLAQVNARMEAQRRGRGXXXXSGVLGSWGATEENAARQD----DSTTVHAIDQSQIRNLAEKHGIVVRFVDDGAASGVSQDGGGCSDGHGEEDEALAAGGSR------GAARGASATPPPTLSSLRTQ-AAPARRSPSPTPPVPAKALPRKPSAVPAAAGGIFSGPARMMRRALEASGGCVPSGKDVSPVADRGGDRASAPPGDNQ---GGSAPPVADARKVLAPTAGAALVGNGQRA-RGVASGGNDSMSGKGDGAIRPRPGCAESSACSVGAATAASN-AVKGIVAPGPASRAARSHGESSRRSEGGSRVGAXXXXXXXXXXXXAPDSSAGKLVGRKRRATMGXXXXXXXXXXXXXXXXXXXXXRKRAV-----EGGGGSGRVGGGGRMEGRLGHRGVGPSGEEDGEGAAAVSARTSPEAMATPTVQSSAPKRMRLVAPSGVVVSQASATPTT-KSGRRASTGGAGWGAGNNNLFKGAMAGIIGRGKRPSP 740
BLAST of mRNA_C-linearis_contig8.15684.1 vs. uniprot
Match: A0A6H5J7E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7E3_9PHAE) HSP 1 Score: 348 bits (893), Expect = 1.140e-102 Identity = 342/658 (51.98%), Postives = 384/658 (58.36%), Query Frame = 1
Query: 418 ASRTICLRTLRGSTSSGALSRLAGWGG-TLAAAPAXXXXXXXVAGAMEHGAPPEAAPGQTGAVAVAVG---AGGGLGVLPSASKVVDLREVKKVKPGPLASAAXXXXXXXEDSDGPEEGEG-PVKIDISAGKRMIEFQLKQNAAEEKRESARLKSERERADAAAAEGSQRMLAQVNARIEAQRRV---GGGVLGSWGSES---AADHDGGXXXGNAVHLIGPSQMRNLAEKHGIVVTFVDDGAASGVAQVRALARAHGIRIQVWGQDGDGDE------------APLGGDCVGKATTPPPILSSLRARRTAPARRSPSPVPEALVKAPPRKTPAAP--AGGMFSGPARMMRRALEASGGCVPSAKDASPKSG-GGGAASPRSKALCVVPACLPPSLELCFLVSCSVPERRLGSAVHSWRIVLSGGRGTRSGRGGGVARPRPG---SGG-SAGSVGAASNGAAKGGVVVGPDSRDARSEGEGCSSKGXXXXXXXXXXXXXXXXXXNTPMVSGRKRREAPGDTDQAGEK--------------ERRGGHAEGTTSKRAVGEGDVDGGGGSXXXAVGGRKEGRLGHRNAGPAAGE---GGATPSTRGSKEA-TTPRIQNGVPKRMRLVAPGGAVVSQAADTPSTHKSGRRTGSGGAAFGPG 2247
ASRTICLR L + LS LAGWGG T A XXXXXXX E A A AV VG GGGLGVLPSA+KVVDLREVKKVKPGPLA++A +DS+G EEG G PVKIDISAGKRMIEFQLKQNAAEEKRE+AR+K+E+ ADAA AEGSQRMLAQVNAR+EAQRR G GVLGSWG+ + HD VH I SQ+RNLAEKHGIVV FVDDGAASGV+QVRALARAHGIRI V G+DG G LSSLR + APARRS SP P KAPPRK P AGG+FSGPARMMRRALEASGGCVPSAKD SP + GG ASP A PP+ + +++ + +G+ + R V SGG + SG+GGG RPRP SG S G+ AASNG +G VV GP SR ARS GE XXXXXXXXXXXXXXXXXX E +G H XXX GR EGRLG+R GP+ E G S R S EA TP +Q+ PKRMRLVAP G VVSQA+ TP+T KSGRR+ +GGA +G G
Sbjct: 103 ASRTICLRPLPETKPIRPLSSLAGWGGVTKAXXXXXXXXXXXXXXXXXXXXXXEVAAVNGQADAVLVGEKVGGGGLGVLPSANKVVDLREVKKVKPGPLAASAPVP----DDSEGEEEGAGGPVKIDISAGKRMIEFQLKQNAAEEKREAARVKNEKGMADAAIAEGSQRMLAQVNARMEAQRRGRGGGSGVLGSWGATEENVTSQHDS-----TTVHAIDQSQIRNLAEKHGIVVRFVDDGAASGVSQVRALARAHGIRILVVGEDGGGSSDGRVEXXXXXXXXXXXXXXXXXXXXXXXTLSSLRTQ-AAPARRSRSPTPPLPTKAPPRKPSVVPPAAGGIFSGPARMMRRALEASGGCVPSAKDVSPVADRGGNRASPPPGDNQGGSA--PPAADARTVLAPTAGAALVGNGQPA-RGVASGGDDSMSGKGGGAGRPRPSCAESGACSVGAAAAASNGV-RGIVVPGPASRAARSHGESSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGKGAHDXXXXXXXXXXXXXXX----XXXXXXXGRMEGRLGYRGVGPSEEEEEEGAEAVSARTSPEAMATPTVQSSAPKRMRLVAPSGVVVSQASATPTT-KSGRRSSTGGAGWGAG 741 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15684.1 >prot_C-linearis_contig8.15684.1 ID=prot_C-linearis_contig8.15684.1|Name=mRNA_C-linearis_contig8.15684.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=747bp MTQDVAEPAPSPAAEEAEEAVPETADGAEETQQAAVTPEANPYPDPAPESback to top mRNA from alignment at C-linearis_contig8:2565186..2572502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15684.1 ID=mRNA_C-linearis_contig8.15684.1|Name=mRNA_C-linearis_contig8.15684.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7317bp|location=Sequence derived from alignment at C-linearis_contig8:2565186..2572502+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2565186..2572502+ >mRNA_C-linearis_contig8.15684.1 ID=mRNA_C-linearis_contig8.15684.1|Name=mRNA_C-linearis_contig8.15684.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4482bp|location=Sequence derived from alignment at C-linearis_contig8:2565186..2572502+ (Chordaria linearis ClinC8C monoicous)back to top |