mRNA_C-linearis_contig8.15660.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15660.1
Unique NamemRNA_C-linearis_contig8.15660.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A6H5KJT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT5_9PHAE)

HSP 1 Score: 408 bits (1049), Expect = 4.140e-138
Identity = 214/288 (74.31%), Postives = 233/288 (80.90%), Query Frame = 3
Query:   51 CGLLALAALA----DGFMAPVRSSCRINHGVGLKMGADSRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
            C LLAL ALA     GFM P   +C    G G  M A  +  G     Y+SWL  K++RARRP FV IARARLQRDFAVLLMR SYQ VD+LDFVPMD+FQK FFL RQ EW  YKENFPR IKQGDL DPDYFDFISFAQYA+VA AMR+GRDFFEEKVG EG+KRTVQR ADFKDNARLPEEHARRVGDRILAYCTE FGSTKLAPVV  G+++ ELREGCD IMN+LRLNFY LDY VTADLDR++L V+A APATIWGQQVLAQRRDRPANDFEAK + AYLR+
Sbjct:    6 CRLLALFALAFASSAGFMVP--PTCHSKRGRGHVMMASDQQEG-----YVSWLTQKIERARRPPFVKIARARLQRDFAVLLMRASYQVVDELDFVPMDDFQKQFFLFRQREWLGYKENFPR-IKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEKVGAEGEKRTVQRSADFKDNARLPEEHARRVGDRILAYCTEAFGSTKLAPVVTQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRA 285          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: D8LI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI96_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 2.650e-104
Identity = 165/240 (68.75%), Postives = 183/240 (76.25%), Query Frame = 3
Query:  183 YLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
            Y+SWL  K++RARRP FV IARARLQRDFAVLLMR+SYQ VD+LDFVPMD+FQK FFLLRQ EW  YK+NFPR IKQGDL DPDYFDFISFAQYA+VA AMR+GRDFFEEK                                   AYCTE FGSTKLAPVVA G+++ ELREGCD IMN+LRLNFY LDY VTADLDR++L V+A APATIWGQQVLAQRRDRPANDFEAK + AYLR+
Sbjct:    7 YVSWLTQKIERARRPPFVKIARARLQRDFAVLLMRSSYQVVDELDFVPMDDFQKQFFLLRQGEWLGYKQNFPR-IKQGDLADPDYFDFISFAQYASVAEAMRNGRDFFEEK-----------------------------------AYCTEAFGSTKLAPVVAQGQTVAELREGCDRIMNLLRLNFYTLDYAVTADLDRKVLTVRATAPATIWGQQVLAQRRDRPANDFEAKVISAYLRA 210          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A836CM91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM91_9STRA)

HSP 1 Score: 255 bits (651), Expect = 8.910e-78
Identity = 144/271 (53.14%), Postives = 177/271 (65.31%), Query Frame = 3
Query:  102 RSSCRINHGVGLKMGADSRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLA-PVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDR---RLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRS 902
            + S +  HG    M AD    G    SYLSW+  K++ +RRP  V I RAR+QRDFAVLLMR+SY   D+LD+ PMD FQ+ FFL RQ EW  +++  P  I QGDL DP+YFDFISFAQYAT+AA MR  +  F EKVG +G+ +TVQR  +  D+A LP EHARRVGDRI  Y  ETF S   A P V+    L  +  G + +M+  RLNF+ +D  V A   +    +L V A APAT+W QQVLAQRRD P NDFEAKAV AYLR+
Sbjct:   45 QGSAKRRHGGCWHMSADEIDDGQ---SYLSWVGRKLELSRRPPPVMIPRARIQRDFAVLLMRSSYAVADELDYTPMDGFQREFFLFRQGEWQDFQKQHPG-ILQGDLTDPNYFDFISFAQYATIAAGMRSAQLLFTEKVGADGETQTVQRAPELADDALLPGEHARRVGDRIFTYIMETFASVPEALPQVSVKPPLSIIARGVERVMDKFRLNFFCVDAKVAASTGKDGSAVLTVTARAPATLWSQQVLAQRRDAPTNDFEAKAVAAYLRA 311          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A7S2V3L1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3L1_9STRA)

HSP 1 Score: 196 bits (497), Expect = 4.510e-55
Identity = 113/244 (46.31%), Postives = 152/244 (62.30%), Query Frame = 3
Query:  174 EGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGR-DFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYC-TETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            E  Y SWL+ K++R  RP  + + R R+ RDFAVLLMR+SY   D++DF+PMDEFQK FFL R DE+  Y E   R + QGDL DP YFDFISFAQYAT++  M++     F EK G EG+   +QR  ++ DN  LP  HA+ VGDR+L Y  TE +   KLAP V    S+  L  G    + +++LN + LD+ V   +  + + V+   PA++W QQVL  ++    NDFEAK + AYLR
Sbjct:   58 EEDYFSWLSQKIERKSRPKAIKLPRLRIDRDFAVLLMRSSYAVADEMDFIPMDEFQKQFFLYRADEYELYLEE-NRGVTQGDLADPVYFDFISFAQYATLSRFMKNPPGQVFVEKRGAEGEDFVIQRPQEYADNKVLPIVHAQLVGDRMLEYLSTEKY--EKLAPKVPEKPSVETLLSGIVQAVGLMKLNSFMLDFQVKP-VSPKEIEVRLQGPASLWSQQVLRGQQTVLTNDFEAKLICAYLR 297          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: R1CRK3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CRK3_EMIHU)

HSP 1 Score: 194 bits (492), Expect = 6.490e-54
Identity = 118/243 (48.56%), Postives = 149/243 (61.32%), Query Frame = 3
Query:  180 SYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            S+   L  +  RA  P   S+ R R+  DFAVLLMRTSY   D+LDF+PMDEFQK  FLLRQD+W  Y++  P  +KQGD+ DP+YFDF+S+ QYAT+AA MRDGR  FEE +   G    V RD    +DNARLP   + RVGD+IL    E +    LAP V    S   L EG   +  +   N    +Y+++A L+   R   + AIAPAT+W QQVL+ R D   NDFEAKA+ AYLR
Sbjct:  100 SFAQILREQAVRAAGPRPRSLPRRRIDIDFAVLLMRTSYATADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPP-VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYN----NYLLSARLEPSERGFQLSAIAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLR 334          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: R1DSH8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSH8_EMIHU)

HSP 1 Score: 192 bits (488), Expect = 9.960e-53
Identity = 116/232 (50.00%), Postives = 145/232 (62.50%), Query Frame = 3
Query:  213 RARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            RA  P   S+ R R+  DFAVLLMRTSY   D+LDF+PMDEFQK  FLLRQD+W  Y++  P  +KQGD+ DP+YFDF+S+ QYAT+AA MRDGR  FEE +   G    V RD    +DNARLP   + RVGD+IL    E +    LAP V    S   L EG   +  +   N    +Y+++A L+   R   + AIAPAT+W QQVL+ R D   NDFEAKA+ AYLR
Sbjct:  166 RAAGPRPRSLPRRRIDIDFAVLLMRTSYATADELDFMPMDEFQKRQFLLRQDDWEGYRQPLPP-VKQGDISDPNYFDFMSYCQYATIAAGMRDGRVVFEELIDANGTSVVVARDPALPRDNARLPALLSLRVGDKILDAIAERYPG--LAPTVELRPSRAALLEGVKALAQVFEYN----NYLLSARLEPSERGFQLSAIAPATVWSQQVLSLRGDL-VNDFEAKAIAAYLR 389          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A0M0K8A7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K8A7_9EUKA)

HSP 1 Score: 198 bits (504), Expect = 1.050e-52
Identity = 114/236 (48.31%), Postives = 140/236 (59.32%), Query Frame = 3
Query:  207 VDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKD-NARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSL----PELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            ++ + RP   ++ R RL++DFAVLLMRTSY   D+LDF+PMDEFQK  FL RQ EW  Y+E  P  + QGDL DP YFDFISF QYA++A+ MR GR  FEE +   G    V R       N  LPE H+ RVGDR+L +  E +    L PV+ P  S     P L EGC  + +I  LN + L   VT       +    +APAT+WG QVL  R D P NDFE  AVLAYLR
Sbjct:  438 IEASMRPKIRALPRRRLEQDFAVLLMRTSYAVADELDFMPMDEFQKEQFLFRQREWDTYREKLP--VMQGDLTDPAYFDFISFCQYASIASGMRRGRMIFEELIDANGTSVIVSRAPTLPQRNELLPEAHSIRVGDRLLNWMLERYDGV-LRPVIPPTSSALPRAPVLVEGCQRVADIFTLNEFALTSTVTPLASGAGVAWTLVAPATLWGAQVLQLRGDEPKNDFEVMAVLAYLR 670          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A0G4F5D5_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5D5_VITBC)

HSP 1 Score: 178 bits (452), Expect = 2.490e-48
Identity = 113/264 (42.80%), Postives = 151/264 (57.20%), Query Frame = 3
Query:  153 SRSSGNDEGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENF-PRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFG---STKLAPVV-APGRSLPE-LREGCDLIMNILRLNFYHL--DYVVTADLD--RRLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRSLRFR 914
            SR SG D  + L  L    D  R PA V I R R+ +DFAV +MR SY   D+LDFVPM++FQK FFL RQ+EW  Y+E   P  I QGDL D +YFDFISFAQY T+   M  G+  F EK G  G+++ V+R A   DN+ LP EH+RRVGDR+L +  + F    S K   ++ A  R  P  +      I N++ +  Y    +  +T + D  +    +  + PAT+WGQQVL+ R     ND+EAK  +AY R   +R
Sbjct:   41 SRDSGADL-NLLQRLKQAADELRSPAPVKIPRTRINQDFAVQMMRQSYNVADELDFVPMNDFQKDFFLYRQNEWERYRERLKPMPITQGDLADANYFDFISFAQYLTLYTEMCSGQQLFVEKTGATGEEQLVRRPAFLADNSLLPSEHSRRVGDRLLDFLIDRFNTDESGKTCCIIRAAARPSPSFVVSNVQQIANLMTILGYAEKGEAKLTGERDDGKFSFEMMLVLPATLWGQQVLSIRGAGLPNDYEAKIAMAYTRRCGYR 303          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A7S0ETJ5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETJ5_9EUKA)

HSP 1 Score: 174 bits (441), Expect = 1.580e-47
Identity = 102/246 (41.46%), Postives = 147/246 (59.76%), Query Frame = 3
Query:  177 GSYLSWLAGKVDRARRPAFVS---IARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRRLLIVKA--IAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            GS    L+  +  A  PA V    + R++L+ DFAVLLMRT+Y   D+LD+ PMD+FQ+  FL RQDEW  Y+E  P  ++QG L +P YFDFISF QYAT+A  M++ +  F+E +   G    V R  +  ++A LP  H+ RVG+ +LA+  + +   K+ P V    +   +R+G   I+NI  +N     Y++ + L+     VK   +APAT+W Q +L  RRD P NDFEAK V+AYL+
Sbjct:    2 GSPADRLSRMLQGAAGPARVKPQVLPRSKLENDFAVLLMRTTYSVADELDYYPMDKFQQDQFLFRQDEWELYREALPG-VQQGFLTEPAYFDFISFVQYATIATTMKEPKMIFDELIDANGTSIVVTRPPELANDALLPMRHSERVGEAVLAWMDDRYN--KIRPKVPSVLTAAAVRDGVQAILNIYEIN----GYMLLSKLEPTSHGVKITLVAPATLWSQSMLRNRRDLP-NDFEAKTVVAYLK 239          
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Match: A0A8J5X5N7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5N7_DIALT)

HSP 1 Score: 172 bits (435), Expect = 2.190e-46
Identity = 111/247 (44.94%), Postives = 146/247 (59.11%), Query Frame = 3
Query:  174 EGSYLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMDEFQKTFFLLRQDEWSAYKENFPRRI-KQGDLQDPDYFDFISFAQYATVAAAMRDGRDFFEEKVGTEGDKRTVQRDADF-KDNARLPEEHARRVGDRILAYCTETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDR---RLLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLR 899
            +G  L  LA ++    RP   +IAR+R+ +DFAVLLMR+SY   +++ FVPMDEFQ+ FFL RQDEW  Y       + KQGDLQDP YFDFISFAQY+T+A  MR+GR  + E VG EG++   +R AD  +DNA LP EH RRVGD I ++ +E +    +AP  AP       RE    ++ + R+  +     V    +R     L     APAT+W Q+VL     R  NDFEA AV A +R
Sbjct:   21 KGDPLKLLARRL----RPKPPAIARSRIDQDFAVLLMRSSYTAAEEMRFVPMDEFQRAFFLNRQDEWQPYLAAVEGLVPKQGDLQDPSYFDFISFAQYSTLAEEMRNGRLAYRELVGAEGEQVVRERPADVPRDNAALPAEHRRRVGDVIFSWASERYD---IAPARAPDEIAARARE----LLEVFRIRGFVASTAVQLAQNRDGSATLTCAVGAPATLWSQRVLEGTALR--NDFEAMAVNALVR 254          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJT5_9PHAE4.140e-13874.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI96_ECTSI2.650e-10468.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM91_9STRA8.910e-7853.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V3L1_9STRA4.510e-5546.31Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
R1CRK3_EMIHU6.490e-5448.56Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DSH8_EMIHU9.960e-5350.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0M0K8A7_9EUKA1.050e-5248.31Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A0G4F5D5_VITBC2.490e-4842.80Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S0ETJ5_9EUKA1.580e-4741.46Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A8J5X5N7_DIALT2.190e-4644.94Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2286467..2289155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.2
Seed ortholog evalue4.5e-84
Seed eggNOG ortholog2880.D8LI96
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.tRNA (guanine-N7-)-methyltransferase activity
EggNOG OGs2S59I@2759,COG0220@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_003680.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1429
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15660.1prot_C-linearis_contig8.15660.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2286499..2288709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.0258677-UTR-C-linearis_contig8:2286466..22864981622930546.0258677-UTR-C-linearis_contig8:2286466..2286498Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2286467..2286498 +
1690881125.138007-UTR-C-linearis_contig8:2286466..22864981690881125.138007-UTR-C-linearis_contig8:2286466..2286498Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2286467..2286498 +
1622930546.1417103-UTR-C-linearis_contig8:2288709..22891551622930546.1417103-UTR-C-linearis_contig8:2288709..2289155Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2288710..2289155 +
1690881125.224129-UTR-C-linearis_contig8:2288709..22891551690881125.224129-UTR-C-linearis_contig8:2288709..2289155Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2288710..2289155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.0424352-CDS-C-linearis_contig8:2286498..22867651622930546.0424352-CDS-C-linearis_contig8:2286498..2286765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2286499..2286765 +
1690881125.1496253-CDS-C-linearis_contig8:2286498..22867651690881125.1496253-CDS-C-linearis_contig8:2286498..2286765Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2286499..2286765 +
1622930546.0582113-CDS-C-linearis_contig8:2286916..22870201622930546.0582113-CDS-C-linearis_contig8:2286916..2287020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2286917..2287020 +
1690881125.1606061-CDS-C-linearis_contig8:2286916..22870201690881125.1606061-CDS-C-linearis_contig8:2286916..2287020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2286917..2287020 +
1622930546.078226-CDS-C-linearis_contig8:2287440..22876571622930546.078226-CDS-C-linearis_contig8:2287440..2287657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2287441..2287657 +
1690881125.1739404-CDS-C-linearis_contig8:2287440..22876571690881125.1739404-CDS-C-linearis_contig8:2287440..2287657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2287441..2287657 +
1622930546.0942707-CDS-C-linearis_contig8:2287808..22879791622930546.0942707-CDS-C-linearis_contig8:2287808..2287979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2287809..2287979 +
1690881125.1828475-CDS-C-linearis_contig8:2287808..22879791690881125.1828475-CDS-C-linearis_contig8:2287808..2287979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2287809..2287979 +
1622930546.1097198-CDS-C-linearis_contig8:2288339..22884471622930546.1097198-CDS-C-linearis_contig8:2288339..2288447Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2288340..2288447 +
1690881125.1973858-CDS-C-linearis_contig8:2288339..22884471690881125.1973858-CDS-C-linearis_contig8:2288339..2288447Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2288340..2288447 +
1622930546.124004-CDS-C-linearis_contig8:2288625..22887091622930546.124004-CDS-C-linearis_contig8:2288625..2288709Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2288626..2288709 +
1690881125.2108712-CDS-C-linearis_contig8:2288625..22887091690881125.2108712-CDS-C-linearis_contig8:2288625..2288709Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2288626..2288709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15660.1

>prot_C-linearis_contig8.15660.1 ID=prot_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=317bp
MRMVRVCGLLALAALADGFMAPVRSSCRINHGVGLKMGADSRSSGNDEGS
YLSWLAGKVDRARRPAFVSIARARLQRDFAVLLMRTSYQFVDDLDFVPMD
EFQKTFFLLRQDEWSAYKENFPRRIKQGDLQDPDYFDFISFAQYATVAAA
MRDGRDFFEEKVGTEGDKRTVQRDADFKDNARLPEEHARRVGDRILAYCT
ETFGSTKLAPVVAPGRSLPELREGCDLIMNILRLNFYHLDYVVTADLDRR
LLIVKAIAPATIWGQQVLAQRRDRPANDFEAKAVLAYLRSLRFRRRDVLD
RLQQPGRDPHVSVVTW*
back to top

mRNA from alignment at C-linearis_contig8:2286467..2289155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15660.1 ID=mRNA_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2689bp|location=Sequence derived from alignment at C-linearis_contig8:2286467..2289155+ (Chordaria linearis ClinC8C monoicous)
CCTGCCACTGCCGTGCTGTGCGAGACACGGTCATGAGAATGGTCCGCGTG TGTGGGCTTCTGGCGCTAGCCGCGCTCGCCGATGGGTTTATGGCTCCGGT AAGGAGCTCTTGCAGGATAAACCACGGCGTTGGACTCAAAATGGGCGCCG ACAGCAGAAGTAGCGGTAACGACGAAGGATCGTACCTATCCTGGCTGGCG GGCAAGGTAGACAGGGCGAGGAGGCCAGCGTTCGTGAGTATAGCAAGGGC ACGGCTGCAGAGGGACTTCGCCGTGCTGCTGATGCGGACAAGCTACCAGG TTTGCGAGCGGAATGAGTCACGTGTTCTCCCGTTTTTCGAATCATGTGTC ACAAAAACTTAAACTTGTCTGTGTCGCGAGTGACACACACACACACATGT TTCTCTCAAAAAGCCACGTTCTCCGTCGTCCATGTGTGCGTTGCGACCAG TTTGTTGACGATCTTGACTTTGTTCCTATGGACGAGTTCCAGAAGACATT CTTCCTCTTGCGGCAGGACGAGTGGTCGGCCTACAAGGAGAACTTCCCCA GGAGGTGAGAGAGGTGGTGATGCAGGGAGCAGTCTAAGCCTACTGATGAT CCGTGATGGGCTACAACGTACATGCATTAGCCTGTGAGCTGCCTACTGCT GCTGTAGGTCGCCCGACAAGAAAATATTTGAGCCTAAAAGAAAACAGGCA AGCTTATCATTGGTTTTCTCTAGTCTACGTATGTATGGAAAATGCGCCCG AATTGGCGATGTTGTTAGGGCTGCTTGATGTACAAGTGTACAAGTAGGAG CGACAGGATGGTACAGTAGAGCCCAGACTCGTCTCATTGCAACACTCCGC CGCCGCGCCTCCCCCAACCCCCCCCAACCCCCCCCCCTCTGCTCATGTAC CTGCACGATCGTCTTCGTTTTGAACCAATCGCACTATGCCTCTTCTTGCT TCATGGCATGCACAACGAGAGCAGAATAAAGCAGGGCGATCTCCAAGATC CAGATTACTTCGATTTCATCAGCTTCGCGCAGTACGCCACCGTGGCGGCG GCGATGCGGGACGGGAGAGACTTTTTCGAAGAGAAAGTCGGGACGGAGGG AGACAAGAGAACGGTCCAGAGGGATGCGGACTTTAAGGACAACGCTCGGT TACCAGAGGAGCACGCCAGGAGAGTGGGGGACAGGATTTTGGTGAGCGAG AGAGGAGAGAGGACATGCACCCGCTCGAATCGTGATCGATTGAGTGCGCA GCCGAACGACGGCGATCACGCGTGTGTATGATGCACCTAACGACCACGTG ATTGTGTTCCCGCTGCCCCTACCCTGCAACAACCCTCTACAGGCGTACTG TACAGAAACTTTTGGATCAACGAAGCTAGCTCCGGTGGTGGCGCCAGGGC GTTCTTTGCCGGAACTGCGGGAAGGGTGCGATCTAATCATGAACATCTTG CGACTCAACTTCTACCACTTGGACTACGTGGTGACAGCAGATCTGGATCG CAGGCTCCTCATCGTGAGTGACGAGAGAAGGGAGGAGGAGGAGCAACCAG TTGGTGTCGTTTCGGCTGTTGGAATGCGACCGACCACCTGCCAGTCTTCG ATGTCGCTCGCCCTAAGCACGCCTGGTTTTTGTGTGGATTTCGTTTTTCA TTCGCAAGCTCAAGGGAAAAGTCTTTCCAAAAATGTTGAATACATTTCGT TCTCTAGCGACTGGTCTACCCGTACACGTTAAGGGCATGCGTTCGCTCTC GGGAAAACTGATTTTTTTTTTTGCGTATTATGTATGTAGCCTGCCTGCTG TCTGCCGAAAGGTACGAGGCGCTCCCTCAATGTCCTCCTCTTGCATCGTC GATTTCTCTATCCCACCGGGCAGGTTAAGGCAATAGCCCCGGCAACTATT TGGGGGCAGCAGGTGTTGGCGCAGAGGCGAGATCGACCCGCGAACGATTT CGAGGCCAAGGCTGTGCTCGCGTACCTCAGAGCCTGCGGTTTCGGCGGCG CGACGTACTCGACCGCCTACAGCAACCTGGACGCGATCCACACGTTTCGG TTGTGACGTGGTAACGCGCCCACGCGCGCTGACGAGGAGTCTCCGGGTTC GATGCGATCGACTTCGCTCAAGTTTTGTGGCCGGGGAGGGGAGTGACCGC GTACCTCAGAGCCTGCGGTTTCGGCGGCGCGACGTACTCGACCGCCTACA GCAACCTGGACGCGATCCACACGTTTCGGTTGTGACGTGGTAACGCGCCC ACGCGCGCTGACGAGGAGTCTCCGGGTTCGATGCGATCGACTTCGCTCAA GTTTTGTGGCCGGGGAGGGGAGTGACCTGTCTTTAGCCTCGGTTGCGTGC GCGATCAGAGAAAGATGGCAGCGATTTGTGTTTTGTTGTGTTCGCACATC AGGGTTTCGAGGATGTAGACTGCGTCGGTGTCCTTCATCGCTCTCCGTGT GTGTGTGTGGTTGTGTTTGCTTTTTCAAAACACAAACCGCTGGAGAAAGC TGGAAAATCGTCCACCAATAACGCCGCTCAGGAGGTTGCGCTGTGCCTCT ACATACATAGCCTAAACACAGAGTAGCCCCGTGGCATGGATCTGTGGGGA TCGTTTGACTTTCCGCGCACCACGCCTGTTGGTGCTGTTAGACAGGCGTC CAAGATGGAGACGGACCCCAAAATCTTGCTTAAAGCTTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:2286467..2289155+

>mRNA_C-linearis_contig8.15660.1 ID=mRNA_C-linearis_contig8.15660.1|Name=mRNA_C-linearis_contig8.15660.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at C-linearis_contig8:2286467..2289155+ (Chordaria linearis ClinC8C monoicous)
ATGAGAATGGTCCGCGTGTGTGGGCTTCTGGCGCTAGCCGCGCTCGCCGA
TGGGTTTATGGCTCCGGTAAGGAGCTCTTGCAGGATAAACCACGGCGTTG
GACTCAAAATGGGCGCCGACAGCAGAAGTAGCGGTAACGACGAAGGATCG
TACCTATCCTGGCTGGCGGGCAAGGTAGACAGGGCGAGGAGGCCAGCGTT
CGTGAGTATAGCAAGGGCACGGCTGCAGAGGGACTTCGCCGTGCTGCTGA
TGCGGACAAGCTACCAGATGAGAATGGTCCGCGTGTGTGGGCTTCTGGCG
CTAGCCGCGCTCGCCGATGGGTTTATGGCTCCGGTAAGGAGCTCTTGCAG
GATAAACCACGGCGTTGGACTCAAAATGGGCGCCGACAGCAGAAGTAGCG
GTAACGACGAAGGATCGTACCTATCCTGGCTGGCGGGCAAGGTAGACAGG
GCGAGGAGGCCAGCGTTCGTGAGTATAGCAAGGGCACGGCTGCAGAGGGA
CTTCGCCGTGCTGCTGATGCGGACAAGCTACCAGTTTGTTGACGATCTTG
ACTTTGTTCCTATGGACGAGTTCCAGAAGACATTCTTCCTCTTGCGGCAG
GACGAGTGGTCGGCCTACAAGGAGAACTTCCCCAGGAGTTTGTTGACGAT
CTTGACTTTGTTCCTATGGACGAGTTCCAGAAGACATTCTTCCTCTTGCG
GCAGGACGAGTGGTCGGCCTACAAGGAGAACTTCCCCAGGAGAATAAAGC
AGGGCGATCTCCAAGATCCAGATTACTTCGATTTCATCAGCTTCGCGCAG
TACGCCACCGTGGCGGCGGCGATGCGGGACGGGAGAGACTTTTTCGAAGA
GAAAGTCGGGACGGAGGGAGACAAGAGAACGGTCCAGAGGGATGCGGACT
TTAAGGACAACGCTCGGTTACCAGAGGAGCACGCCAGGAGAGTGGGGGAC
AGGATTTTGAATAAAGCAGGGCGATCTCCAAGATCCAGATTACTTCGATT
TCATCAGCTTCGCGCAGTACGCCACCGTGGCGGCGGCGATGCGGGACGGG
AGAGACTTTTTCGAAGAGAAAGTCGGGACGGAGGGAGACAAGAGAACGGT
CCAGAGGGATGCGGACTTTAAGGACAACGCTCGGTTACCAGAGGAGCACG
CCAGGAGAGTGGGGGACAGGATTTTGGCGTACTGTACAGAAACTTTTGGA
TCAACGAAGCTAGCTCCGGTGGTGGCGCCAGGGCGTTCTTTGCCGGAACT
GCGGGAAGGGTGCGATCTAATCATGAACATCTTGCGACTCAACTTCTACC
ACTTGGACTACGTGGTGACAGCAGATCTGGATCGCAGGCTCCTCATCGCG
TACTGTACAGAAACTTTTGGATCAACGAAGCTAGCTCCGGTGGTGGCGCC
AGGGCGTTCTTTGCCGGAACTGCGGGAAGGGTGCGATCTAATCATGAACA
TCTTGCGACTCAACTTCTACCACTTGGACTACGTGGTGACAGCAGATCTG
GATCGCAGGCTCCTCATCGTTAAGGCAATAGCCCCGGCAACTATTTGGGG
GCAGCAGGTGTTGGCGCAGAGGCGAGATCGACCCGCGAACGATTTCGAGG
CCAAGGCTGTGCTCGCGTACCTCAGAGTTAAGGCAATAGCCCCGGCAACT
ATTTGGGGGCAGCAGGTGTTGGCGCAGAGGCGAGATCGACCCGCGAACGA
TTTCGAGGCCAAGGCTGTGCTCGCGTACCTCAGAAGCCTGCGGTTTCGGC
GGCGCGACGTACTCGACCGCCTACAGCAACCTGGACGCGATCCACACGTT
TCGGTTGTGACGTGGTAAAGCCTGCGGTTTCGGCGGCGCGACGTACTCGA
CCGCCTACAGCAACCTGGACGCGATCCACACGTTTCGGTTGTGACGTGGT
AA
back to top