mRNA_C-linearis_contig8.15659.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: D8LI97_ECTSI (Transmembrane protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI97_ECTSI) HSP 1 Score: 314 bits (804), Expect = 8.280e-103 Identity = 167/204 (81.86%), Postives = 182/204 (89.22%), Query Frame = 3
Query: 24 MASAAEDGVDQA-AESLGGGVIAERLEQHGEAFTGFLGDVQATLLSQLNTQSVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFKREIAAKKEAGKSKAKRGSKDKKAMKQA 632
MA+ AE VDQA AE LG +AE+ EQHG+AFTGFLGDVQA LLSQLN SVGPEGFVENFQAFRSAVDWSE WIQG+LVFHL LW+FFI+TR+SFGAQVGLF V+L GTR SEFINT LRDRWQ FSRQNYFDE+GIFMGVMWAGPLL+LGFTMLV+LLCQ ASLLVTVKT+QFKREIAAKK+ GKSKAKRG+KDKKA KQA
Sbjct: 1 MATVAEK-VDQAIAEGLGEEALAEKFEQHGDAFTGFLGDVQANLLSQLNAHSVGPEGFVENFQAFRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQVGLFAVVLTGTRLSEFINTCLRDRWQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA 203
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A835ZFQ2_9STRA (Transmembrane protein 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ2_9STRA) HSP 1 Score: 136 bits (343), Expect = 1.040e-34 Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 3
Query: 126 FLGDVQATLLSQLNTQSVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFKREIAAKK 572
F+ ++A +L Q GP+GF+EN QAF +AVDWSETWIQ +L FH+++ +++R Q+ LF I R +E+ N + RW++F+RQNYFDE G+F+GV+W PLLL+ ML+ + ++A LLVTVK Q +REIAA+K
Sbjct: 12 FIASLEANML-QAAKSGPGPQGFIENCQAFCAAVDWSETWIQAILCFHVAVAAAALLSRNRLNCQIALFLSICALVRGAEWANAYAARRWRDFARQNYFDERGVFVGVVWCAPLLLVLLGMLLGFVVRSARLLVTVKRAQLRREIAARK 159
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A7S2Y0G5_9STRA (Transmembrane protein 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G5_9STRA) HSP 1 Score: 137 bits (344), Expect = 4.180e-34 Identity = 69/150 (46.00%), Postives = 99/150 (66.00%), Query Frame = 3
Query: 129 LGDVQATLLSQLNTQSVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFKREIAAKKEA 578
+ ++ +L GPEGF EN +AF++AV+W E WIQG+L FH+ +++ ++ RK+F QV +F +I+G SE INT ++ WQEFS Q+YFD NG+FM VM+AGPLLL+GF L N L +A LLV VK + K+ + K +A
Sbjct: 53 IASLEDQVLQMARESGAGPEGFWENVEAFKAAVNWEERWIQGILAFHVIVFVLMLVFRKNFNVQVCIFLLIVGLVSCSETINTLGQNHWQEFSTQDYFDPNGLFMMVMFAGPLLLIGFLQLFNFLLISADLLVKVKRAELKKHMREKNDA 202
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A7S4A3H0_9STRA (Transmembrane protein 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3H0_9STRA) HSP 1 Score: 122 bits (307), Expect = 6.330e-29 Identity = 66/143 (46.15%), Postives = 88/143 (61.54%), Query Frame = 3
Query: 129 LGDVQATLLSQLNTQSV--GPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFK 551
L DV L Q+ V P+ F E AF +AVDW E WI+ +L++HLSLW+ F+ TRK+F Q GLF I +E +N RW++F+ QNYFDE G+F G+M PLL L F ML+N L A+S+LVTVK +F+
Sbjct: 31 LNDVVEGLKDQIFADHVKGAPQTFREECAAFIAAVDWRENWIRCLLLWHLSLWVLFVFTRKNFPVQCGLFFGIAACVALAETLNGLCAKRWEKFATQNYFDERGVFAGIMLCAPLLALAFAMLLNFLVMASSMLVTVKRAEFR 173
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A7S2SGF8_9STRA (Transmembrane protein 18 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGF8_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.000e-28 Identity = 63/147 (42.86%), Postives = 93/147 (63.27%), Query Frame = 3
Query: 129 LGDVQATLLSQLNTQSV----GPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFKRE 557
L D+ +L Q+ T + P G +++ QAF +AVDWSE WIQ +L FH++LW+ + TR+ Q G F + G S+E +NT+ WQ+FS+Q+YF NG F+GVM+A PLL L ++N LC AA+LLV VK ++ +R+
Sbjct: 27 LNDIIESLQEQVYTMAREAGNAPSGLLDDIQAFTAAVDWSERWIQALLGFHVALWMITLWTRRYIWWQCGTFFAVCGLVWSAEPMNTWAAAHWQDFSKQDYFQPNGFFVGVMYAAPLLALAMFQMINFLCIAANLLVEVKRKELRRK 173
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A7S2CTX0_9STRA (Transmembrane protein 18 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTX0_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.390e-26 Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 3
Query: 126 FLGDVQATLLSQLNTQSVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFKREIAAKK 572
F+G ++ + + P+ F E+ QAF +AVDW+E WIQG+L+ H LW+ + R+ F QV +F ++ SSE IN+ RWQ FS Q+YFD +G F+ VM+AGPLL L ++N L +A++LV VK + K +A+KK
Sbjct: 29 FIGGLEEQVYAMAREAGNAPKNFTEDVQAFIAAVDWNEKWIQGLLLGHFLLWVITLGFRRRFYLQVFIFFMVCAMVWSSEHINSAAHVRWQSFSTQDYFDPSGFFISVMFAGPLLALALFQMINFLIISANMLVEVKRNELKTNLASKK 177
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A2J6L7N8_LACSA (Transmembrane protein 18 n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L7N8_LACSA) HSP 1 Score: 104 bits (260), Expect = 7.130e-23 Identity = 51/146 (34.93%), Postives = 82/146 (56.16%), Query Frame = 3
Query: 114 AFTGFLGDVQATLLSQLNTQSVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFK 551
A G + +Q + + +G + ++NF F A+DW E W+ G++VFH + + +RK+ Q+ LF + L G +E +NT L D W+ F+ QNYFD NG+F+ V+W+GPLL+ +LVN L L+V K + +
Sbjct: 7 AMNGHMDQMQELVEKISSELRIGMQPAMDNFIGFFHAIDWKEPWLVGLMVFHFVTLIIILTSRKNINFQMSLFLLSLAGVYLAERLNTVLSDNWKSFAGQNYFDRNGVFLSVLWSGPLLVFSLIILVNTLFSLCQLMVKWKRAELR 152
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A371GI83_MUCPR (Transmembrane protein 18 n=8 Tax=Phaseoleae TaxID=163735 RepID=A0A371GI83_MUCPR) HSP 1 Score: 104 bits (260), Expect = 7.520e-23 Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 3
Query: 135 DVQATLLSQLNTQ-SVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFK 551
D+ A L+ +L++ G +NF F A+DW E W+ G+L FH+ L L II+RK Q+ LF + L G +E +N FL W+ FS QNYFD +G+FM V+W+GPLL++ +L+N L L+V K + +
Sbjct: 13 DLMADLVQKLSSDLRAGIRPAYDNFMGFFHAIDWKEPWLMGLLAFHVVLLLVVIISRKKTNFQMFLFLLTLAGVYLAENLNRFLGKNWKSFSGQNYFDPSGLFMSVVWSGPLLVISMIILINTLFSLCYLIVRWKRAELR 152
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: L1K301_GUITC (Transmembrane protein 18 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K301_GUITC) HSP 1 Score: 102 bits (255), Expect = 1.110e-22 Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 3
Query: 192 FVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQF 548
F + + F SAV+W+ETWI + +FH ++ L I++R++ Q+ LF ++G +E +N FL W+ FS QNYFD++G+F+ V+W+ PLLL+G M+++ L AASLLV V+ Q+
Sbjct: 3 FKNSVKGFVSAVEWTETWIIALGIFHFTMLLLAILSRRNSNIQIVLFCFMMGCIYLAEPLNRFLSTHWESFSTQNYFDKHGVFLSVVWSTPLLLIGAYMVIHTLIAAASLLVQVRLQRL 121
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Match: A0A444Z1X9_ARAHY (Transmembrane protein 18 n=2 Tax=Arachis TaxID=3817 RepID=A0A444Z1X9_ARAHY) HSP 1 Score: 105 bits (262), Expect = 1.170e-22 Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query: 135 DVQATLLSQLNTQ-SVGPEGFVENFQAFRSAVDWSETWIQGVLVFHLSLWLFFIITRKSFGAQVGLFTVILGGTRSSEFINTFLRDRWQEFSRQNYFDENGIFMGVMWAGPLLLLGFTMLVNLLCQAASLLVTVKTQQFK 551
D+ A L+ +L+++ G +NF F A+DW E W+ G+ FH+ L L IITR+ Q+ LF + L G +E +NT LR W+ FS QNYFD NG+FM V+W+GPLL++ +L+N L L+V K + +
Sbjct: 57 DLMADLIQKLSSELRAGLRPAYDNFIGFFHAIDWKEPWLIGLAGFHIVLLLVTIITRRKTNFQMCLFLLTLAGVYLAERLNTVLRMNWKSFSSQNYFDPNGLFMSVLWSGPLLIIAMIILINTLFSLCYLIVRWKRAELR 196 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15659.1 >prot_C-linearis_contig8.15659.1 ID=prot_C-linearis_contig8.15659.1|Name=mRNA_C-linearis_contig8.15659.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp MASAAEDGVDQAAESLGGGVIAERLEQHGEAFTGFLGDVQATLLSQLNTQback to top mRNA from alignment at C-linearis_contig8:2282772..2286333- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15659.1 ID=mRNA_C-linearis_contig8.15659.1|Name=mRNA_C-linearis_contig8.15659.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3562bp|location=Sequence derived from alignment at C-linearis_contig8:2282772..2286333- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2282772..2286333- >mRNA_C-linearis_contig8.15659.1 ID=mRNA_C-linearis_contig8.15659.1|Name=mRNA_C-linearis_contig8.15659.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at C-linearis_contig8:2282772..2286333- (Chordaria linearis ClinC8C monoicous)back to top |