mRNA_C-linearis_contig8.15656.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15656.1
Unique NamemRNA_C-linearis_contig8.15656.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2239732..2241118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size599
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15656.1prot_C-linearis_contig8.15656.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2240792..2241118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.8146439-UTR-C-linearis_contig8:2239731..22398321622930504.8146439-UTR-C-linearis_contig8:2239731..2239832Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2239732..2239832 +
1690881103.699109-UTR-C-linearis_contig8:2239731..22398321690881103.699109-UTR-C-linearis_contig8:2239731..2239832Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2239732..2239832 +
1622930504.8279378-UTR-C-linearis_contig8:2240620..22407911622930504.8279378-UTR-C-linearis_contig8:2240620..2240791Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2240621..2240791 +
1690881103.7117856-UTR-C-linearis_contig8:2240620..22407911690881103.7117856-UTR-C-linearis_contig8:2240620..2240791Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2240621..2240791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.8406136-CDS-C-linearis_contig8:2240791..22411181622930504.8406136-CDS-C-linearis_contig8:2240791..2241118Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2240792..2241118 +
1690881103.722689-CDS-C-linearis_contig8:2240791..22411181690881103.722689-CDS-C-linearis_contig8:2240791..2241118Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2240792..2241118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15656.1

>prot_C-linearis_contig8.15656.1 ID=prot_C-linearis_contig8.15656.1|Name=mRNA_C-linearis_contig8.15656.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MSQDPGDGDPAQPPPPPPQQQQSGDSTVSSTGAVNGEVDGALPPALTDVN
IEYSPVSGSGGGGSGSRGGGDDSPAVASAGSSPADSTESMGDDSTTVGQQ
YPPPSRGTG
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mRNA from alignment at C-linearis_contig8:2239732..2241118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15656.1 ID=mRNA_C-linearis_contig8.15656.1|Name=mRNA_C-linearis_contig8.15656.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1387bp|location=Sequence derived from alignment at C-linearis_contig8:2239732..2241118+ (Chordaria linearis ClinC8C monoicous)
AACACATCAAAACAAACGAATACCGCGCGAGAGCGGGGAGAGAGAGGGAG
CGGAGAGGAGTGCGTTGCCCGCATCTTTGCGCTTCTGCTGGCGACTGCGA
CGTAGGTGCCCCGCGGAGCATGTTTGCCATTTTTCTTGCGCAAAGTCTTT
CGATCGTATTCCAGAGTAGTCAGCGTGCGCACGCTCTGTCGCCCTAAAGA
GCAGGAGGAGACCCTCCGTGTGCCTCGCGGACGCGGGACTCCGAGGCTAG
CCAGGCACCCCCCCACCATATCTTGGTCGTTGTATGCACTCCCCCGCAGG
ATTGTTCGTTGGTGAGGTTGGATCTCGTTGTTTGGGATGGAGCAAAAAGA
AAAGAGACTAACACACATTTTCGTGTTGACTTTCGTGACCAGACGGTGGG
AGCGGGGCAACGAGACTGAGAGAGAGAGACCGGAGAGCAAATCAAAAGGG
GCAGGCACTAGCTTATCTCCATAGAGGCATGTGTGACTCCAAGCGGCTCT
CGTAGATTGGAACTTATTCGTCCACATCAGGGATCGAGAAACACGATTCG
CCTCTTTCCCCCGACTGCATTAATTAAGAATATGAAACATCGCTACACCA
CTCAGCTCTTCAATCCCCATGGAACGAGATTCCCGAAGCAAATTGCTGTT
GTGCACGCGCCCGAGCGAGAGCAGAGCGAGAGCAGAGTGAGAGGGAAGCA
CAAGCCCATCCGTGTGGCAGCCTTGTGCGCACCCCACGCCCTTCTGCTGT
GTGTTCCAGATACAGCAAGAGGAACGAACTCCCGCACACACCGAAAGTTA
AAAAAACGAAAAAACTGACCTCGAACTTTCCTCATGTCCAACCTTGCCCC
GCGGGTAAATACCTTCATTTTTTTCACATGTCCTCGCAGGCGACGCAACA
GAGCCACTCAGAAAAACTGGCGAAAGGGCCTGCGCTCAGCGCAAGCTCCT
CCTTCAAAATCGCGAAAAAACAACCCCCGCGATTTTTAATTGGATCGGAT
TATTTGGTATATTTTTCTAGGATCGTGTGTGTGTAGGCCGGAACCTCCAC
CGCCGTCCTCATGTCACAAGACCCCGGAGATGGCGACCCCGCCCAGCCGC
CCCCGCCCCCGCCACAACAGCAGCAGTCCGGCGACAGCACGGTGAGCAGC
ACCGGCGCTGTCAACGGCGAGGTCGACGGAGCGCTGCCGCCGGCGCTAAC
GGACGTGAACATCGAGTACTCTCCCGTGTCCGGTAGCGGCGGCGGCGGCA
GCGGCAGCCGCGGGGGCGGGGACGACTCTCCCGCGGTTGCGTCGGCCGGC
AGTAGCCCTGCCGACAGCACGGAGAGTATGGGGGACGACAGCACCACCGT
AGGACAGCAGTACCCGCCGCCCTCGAGAGGAACGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2239732..2241118+

>mRNA_C-linearis_contig8.15656.1 ID=mRNA_C-linearis_contig8.15656.1|Name=mRNA_C-linearis_contig8.15656.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig8:2239732..2241118+ (Chordaria linearis ClinC8C monoicous)
ATGTCACAAGACCCCGGAGATGGCGACCCCGCCCAGCCGCCCCCGCCCCC
GCCACAACAGCAGCAGTCCGGCGACAGCACGGTGAGCAGCACCGGCGCTG
TCAACGGCGAGGTCGACGGAGCGCTGCCGCCGGCGCTAACGGACGTGAAC
ATCGAGTACTCTCCCGTGTCCGGTAGCGGCGGCGGCGGCAGCGGCAGCCG
CGGGGGCGGGGACGACTCTCCCGCGGTTGCGTCGGCCGGCAGTAGCCCTG
CCGACAGCACGGAGAGTATGGGGGACGACAGCACCACCGTAGGACAGCAG
TACCCGCCGCCCTCGAGAGGAACGGGCATGTCACAAGACCCCGGAGATGG
CGACCCCGCCCAGCCGCCCCCGCCCCCGCCACAACAGCAGCAGTCCGGCG
ACAGCACGGTGAGCAGCACCGGCGCTGTCAACGGCGAGGTCGACGGAGCG
CTGCCGCCGGCGCTAACGGACGTGAACATCGAGTACTCTCCCGTGTCCGG
TAGCGGCGGCGGCGGCAGCGGCAGCCGCGGGGGCGGGGACGACTCTCCCG
CGGTTGCGTCGGCCGGCAGTAGCCCTGCCGACAGCACGGAGAGTATGGGG
GACGACAGCACCACCGTAGGACAGCAGTACCCGCCGCCCTCGAGAGGAAC
GGGC
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