mRNA_C-linearis_contig8.15648.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15648.1
Unique NamemRNA_C-linearis_contig8.15648.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15648.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.690e-34
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    4 CWFYFGRAVELEGAFLCSSEFDPLLSFFQTAPTLRAYQYGRFEMHLAAAGDGSIWFAESERYTYTMVTNFYTCGVAVQPLNSTTVS 261
            CWFYFGR VEL   F+CSS+ DP LS FQ  PTLR Y YGRFEM+L+ AG+GS+WF  SE+Y Y MVTNFYTCGV VQPL+STTV+
Sbjct:    7 CWFYFGRTVELGQTFVCSSDPDPQLSAFQNTPTLRPYTYGRFEMYLSTAGNGSLWFGISEQYKYAMVTNFYTCGVTVQPLDSTTVT 92
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI90_ECTSI2.690e-3469.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2210478..2210741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.5478451-CDS-C-linearis_contig8:2210477..22107411622930543.5478451-CDS-C-linearis_contig8:2210477..2210741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2210478..2210741 +
1690881123.8630564-CDS-C-linearis_contig8:2210477..22107411690881123.8630564-CDS-C-linearis_contig8:2210477..2210741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2210478..2210741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15648.1prot_C-linearis_contig8.15648.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2210478..2210741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15648.1

>prot_C-linearis_contig8.15648.1 ID=prot_C-linearis_contig8.15648.1|Name=mRNA_C-linearis_contig8.15648.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=88bp
RCWFYFGRAVELEGAFLCSSEFDPLLSFFQTAPTLRAYQYGRFEMHLAAA
GDGSIWFAESERYTYTMVTNFYTCGVAVQPLNSTTVS*
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mRNA from alignment at C-linearis_contig8:2210478..2210741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15648.1 ID=mRNA_C-linearis_contig8.15648.1|Name=mRNA_C-linearis_contig8.15648.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at C-linearis_contig8:2210478..2210741+ (Chordaria linearis ClinC8C monoicous)
AGGTGCTGGTTCTACTTCGGGCGAGCCGTGGAGCTGGAGGGGGCGTTCTT
GTGCTCCTCCGAGTTCGACCCCTTGCTGTCGTTCTTTCAGACCGCGCCGA
CGCTCCGCGCCTACCAGTACGGGCGGTTCGAGATGCACCTGGCTGCCGCC
GGTGACGGGTCGATTTGGTTCGCAGAAAGCGAGCGCTACACGTACACGAT
GGTGACGAACTTCTACACTTGTGGGGTTGCGGTGCAACCACTCAACTCTA
CCACCGTGAGTTAA
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Coding sequence (CDS) from alignment at C-linearis_contig8:2210478..2210741+

>mRNA_C-linearis_contig8.15648.1 ID=mRNA_C-linearis_contig8.15648.1|Name=mRNA_C-linearis_contig8.15648.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at C-linearis_contig8:2210478..2210741+ (Chordaria linearis ClinC8C monoicous)
AGGTGCTGGTTCTACTTCGGGCGAGCCGTGGAGCTGGAGGGGGCGTTCTT
GTGCTCCTCCGAGTTCGACCCCTTGCTGTCGTTCTTTCAGACCGCGCCGA
CGCTCCGCGCCTACCAGTACGGGCGGTTCGAGATGCACCTGGCTGCCGCC
GGTGACGGGTCGATTTGGTTCGCAGAAAGCGAGCGCTACACGTACACGAT
GGTGACGAACTTCTACACTTGTGGGGTTGCGGTGCAACCACTCAACTCTA
CCACCGTGAGTTAAAGGTGCTGGTTCTACTTCGGGCGAGCCGTGGAGCTG
GAGGGGGCGTTCTTGTGCTCCTCCGAGTTCGACCCCTTGCTGTCGTTCTT
TCAGACCGCGCCGACGCTCCGCGCCTACCAGTACGGGCGGTTCGAGATGC
ACCTGGCTGCCGCCGGTGACGGGTCGATTTGGTTCGCAGAAAGCGAGCGC
TACACGTACACGATGGTGACGAACTTCTACACTTGTGGGGTTGCGGTGCA
ACCACTCAACTCTACCACCGTGAGTTAA
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