mRNA_C-linearis_contig8.15631.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15631.1
Unique NamemRNA_C-linearis_contig8.15631.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15631.1 vs. uniprot
Match: D7FJF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 8.320e-94
Identity = 142/175 (81.14%), Postives = 154/175 (88.00%), Query Frame = 1 
Query:  181 SKRNVRISSSVTVVNGLYWSFYVGVLESQLPTTTWEPWGYVGLGFTAIMAAASHTFAKHCVSQISYLPDLRLLSIGTHTFLGNERMPRLVRLGGTVVTRTRPDAMYLTFKVRGDYFNSLLDTDDGVIHNKEMLMRLLKASPHGKVAGPSAAANDSDESTVV-KTKPKWKKRKRRR 702
            S+RNVRISSSVTVVNGLYWSFYVGVLE  LPTTTWEPWGY+GLGFTAIM AA+HTFA+H VSQISYLP+LRLLSIGTH F G ERMPRLVRLGGTVV+RT+P A+YLTFKVRGD FNSLLDT DGV HN+EMLMRLLKASP+G+VA PSAAA DS+ S    K K KW KRKRRR
Sbjct:   31 SQRNVRISSSVTVVNGLYWSFYVGVLEPHLPTTTWEPWGYLGLGFTAIMTAATHTFARHWVSQISYLPELRLLSIGTHNFFGAERMPRLVRLGGTVVSRTKPKAVYLTFKVRGDRFNSLLDTADGVFHNREMLMRLLKASPNGEVADPSAAAKDSNGSPAPGKKKQKWNKRKRRR 205
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJF7_ECTSI8.320e-9481.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2094308..2097146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006170.1
Exons7
Model size705
Cds size705
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.688153-CDS-C-linearis_contig8:2094307..20944931622930540.688153-CDS-C-linearis_contig8:2094307..2094493Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2094308..2094493 +
1690881122.3829148-CDS-C-linearis_contig8:2094307..20944931690881122.3829148-CDS-C-linearis_contig8:2094307..2094493Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2094308..2094493 +
1622930540.7121441-CDS-C-linearis_contig8:2094987..20950971622930540.7121441-CDS-C-linearis_contig8:2094987..2095097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2094988..2095097 +
1690881122.394753-CDS-C-linearis_contig8:2094987..20950971690881122.394753-CDS-C-linearis_contig8:2094987..2095097Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2094988..2095097 +
1622930540.730329-CDS-C-linearis_contig8:2095352..20954101622930540.730329-CDS-C-linearis_contig8:2095352..2095410Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2095353..2095410 +
1690881122.4116528-CDS-C-linearis_contig8:2095352..20954101690881122.4116528-CDS-C-linearis_contig8:2095352..2095410Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2095353..2095410 +
1622930540.7495568-CDS-C-linearis_contig8:2095765..20958371622930540.7495568-CDS-C-linearis_contig8:2095765..2095837Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2095766..2095837 +
1690881122.424364-CDS-C-linearis_contig8:2095765..20958371690881122.424364-CDS-C-linearis_contig8:2095765..2095837Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2095766..2095837 +
1622930540.76796-CDS-C-linearis_contig8:2096099..20961831622930540.76796-CDS-C-linearis_contig8:2096099..2096183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2096100..2096183 +
1690881122.4343197-CDS-C-linearis_contig8:2096099..20961831690881122.4343197-CDS-C-linearis_contig8:2096099..2096183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2096100..2096183 +
1622930540.7857316-CDS-C-linearis_contig8:2096497..20966021622930540.7857316-CDS-C-linearis_contig8:2096497..2096602Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2096498..2096602 +
1690881122.4505951-CDS-C-linearis_contig8:2096497..20966021690881122.4505951-CDS-C-linearis_contig8:2096497..2096602Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2096498..2096602 +
1622930540.8117507-CDS-C-linearis_contig8:2097056..20971461622930540.8117507-CDS-C-linearis_contig8:2097056..2097146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2097057..2097146 +
1690881122.4671683-CDS-C-linearis_contig8:2097056..20971461690881122.4671683-CDS-C-linearis_contig8:2097056..2097146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2097057..2097146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15631.1prot_C-linearis_contig8.15631.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2094308..2097146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15631.1

>prot_C-linearis_contig8.15631.1 ID=prot_C-linearis_contig8.15631.1|Name=mRNA_C-linearis_contig8.15631.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=235bp
RLANAAAHRCLSTAVADGPTRDTTASTPAAGQEQDAAGPGSASTETDGMA
DPRHILLYTGSKRNVRISSSVTVVNGLYWSFYVGVLESQLPTTTWEPWGY
VGLGFTAIMAAASHTFAKHCVSQISYLPDLRLLSIGTHTFLGNERMPRLV
RLGGTVVTRTRPDAMYLTFKVRGDYFNSLLDTDDGVIHNKEMLMRLLKAS
PHGKVAGPSAAANDSDESTVVKTKPKWKKRKRRR*
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mRNA from alignment at C-linearis_contig8:2094308..2097146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15631.1 ID=mRNA_C-linearis_contig8.15631.1|Name=mRNA_C-linearis_contig8.15631.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2839bp|location=Sequence derived from alignment at C-linearis_contig8:2094308..2097146+ (Chordaria linearis ClinC8C monoicous)
CGTCTTGCCAATGCAGCTGCGCACCGATGTCTATCCACGGCGGTAGCTGA
CGGGCCTACACGTGACACGACGGCCTCTACGCCCGCTGCTGGACAGGAAC
AGGACGCCGCAGGCCCTGGCAGCGCTTCTACGGAAACGGATGGGATGGCT
GATCCCAGGCATATCCTGCTCTACACAGGTTCCAAGGTAGGAGATAAGCA
AAACTGCCACTCTCCGTTCTCTCTCGTTGGGTTCTCTCAGCCCCCTTTGG
CCTTTCCCCGCAACCAACCGTAGGACTGCGAGAACAGCAGCGACCAGGAG
TGTGGTGGCTAAAAAATCTGCTCCTTCGGTAGTACAACGCAGCCGTTCGG
CGCTGCGGGAAAAAGTCCCTGGTACGTTTTGGTAGAGTACTTTCGATGCC
GCGCACGGAGTATGCACATGAACAGCTTGACGACCGCTCCCTCACGATCC
ACCTTGAAATCCACTCCTCCTCGAGGCCATGACCGGTTCCAAGCAGTTCC
GGCGAGAGAGTATCTCTTCGCTTGATGCTTTTGGCTGCACGCGCATTTCG
CAGCATGCGTAACGCCCTGTGCAGTGCAGTGCAGAAACACTAGCCCAAAC
CTGTTCCCAATTGCTAAAATATAGTATCTCCTCTGCACCGCGCCCGTTCC
TCTCAACCCCCGTTGCCGTTGCCCACACAGAGGAATGTTAGAATATCTAG
CTCGGTGACGGTAGTGAACGGCCTCTACTGGTCCTTCTACGTGGGTGTCC
TTGAATCTCAGCTTCCAACCACAACCTGGGAACCTTGGGGGTAAGCTTGC
CACGTGTGCGAGTGTAGACCTTCTGAACTCGTCGGCTATATGGGTACTTA
CTTGGGAGCAGACCGTGGAATTTACTCCACGGTAACACGATCCTGCGCAT
GTGTTTGGGCACCAAGTCTGTTGATGTAACCAACTCTCTCTTTCTATCGT
TTGCCGACTTTCAAAAAAGTTCCTGCAATGTGTGTATGCCCATTTTCGTG
TGCTCTGTCCTCTCTCTCTCTTGTCTCCATGGCTTCGTACTCCAGATACG
TAGGGCTCGGTTTCACGGCCATCATGGCCGCGGCTTCTCACACGTTTGCT
AAGGTGAGTGGCGCGAACTTGTAGCGTCTCAAGTGTTTGTGTCAGGTGCA
TTGGTGAAATGAAGAGTCGCCAATGCCATTGGCGTTGCCGGGTGTCCACA
CGAGTGAGTGCCGCCTTCACGTGAGGGTGGTGGTGATACGGATAAATCTG
TTGTTTCTGGCATGATTGTCTGGCGTGAGATTTTGCCGCCTTGAGTGCAA
CGGGCGTTGGAATGTACAATTCTCGACCCCTTGAGCGAGAATTTCAGGAT
TTTTTTTTGCATGTATTACTCGTCACGGTTTGCGTGTGTCGATGCCTACC
TTGTGCCAACCCCGCCCTCGCTCCCGGCGTGTTTGTCGAACCACCCGCGC
GCACGCAGCATTGCGTCAGCCAGATATCTTACCTTCCCGATCTGAGGCTG
CTTTCTATCGGGACCCACACCTTCCTTGGGGTAAGCAAATACGGCGGCGG
CAGTCTCTTAGCATGCCTGACGATTAGAGGTGACTCGATGCCCCAGCCAG
GCGCATAAAACCAAGCTTGTTGTTTTCCTTGGTGGCGCAACATCGTGCCA
CGCGCCTTTTTGCTGGTGGCCTTTCCCTTGCCGCGTGGGGCACCCGAGCT
ATATGTGAGCTACGCGTTTGCTGGACGTCCGCGCTTGATAGCAACAAGCC
CCTGAAATTGTGGCGCGGCACTCCTGATTCGCTGTTGTGCAGAATGAACG
GATGCCGCGGCTCGTTAGGCTCGGCGGAACAGTAGTGACCCGCACACGGC
CCGATGCGATGTACTTGACGTTCAAGGTGAGAGCGAGACGCTGCAACGGC
GGTGGCTAGTGTTCAGCAGAGAGTGGATGTGTTTCAAGCGTGTTGTTGGC
GTGCCGTTCGTCATCGCGCTTGACTGCTGTGGCGCTTCCAGAAACATCAT
GCGGCGAAATACTGGATGAGAGGCTAGAAAGAGACATCGGGCATTCTCTG
CGTGCTGTGCGTGATCATCTTGCCCTTGTGCTGCTCTCCACCATAGTCTT
GTCTCGAACATAAAAGCATCACGAGCACTGGCTTTCAACTTACTGACATC
TCTCGCCTGGACCGGCCATGGCGCACTTGGCTTTCTGTAGGTGAGGGGGG
ACTACTTTAACTCGCTGCTGGACACTGACGACGGCGTGATTCACAACAAG
GAGATGCTCATGAGACTACTCAAGGCTTCGCCCCACGGAAAAGTGGTGAG
CGCCGCTGGGGGGAAGACAAGCCGTGGGTTGCTTGTGCGGCCATTTGTTG
GTGCTCGGAAGCATATTCATTCTGAACGAGGGTGGGGCTGTTTTGAACGA
AAAAATTAGCATACTTGGAACGGTTGTGGATACTGAGTTAGACGAAAAGC
CATTGAAAATGCTGGTAGCACGCCGTACTTCTTCTTTATGTGTTTAACGT
GAGGACAATGCTTGGGCGACTCTACACTCACTCGTGGGTTCAGTAGACCA
GACGCGAGGCCTTCCACCTGGCGAATCGGCCGCAGGTTTCGCTCGCCGCC
GTTGTCACAGAACAGTGGTGTTTTTCTTCGCACACATGAGCTCCCCAAAC
ACCGTCGAAAACTCTCTCAAACAGGGAAGATATCTGAGATTTTTGTGCGC
TTTTCCTGCCCTTTCTCTTCCCCCTTGTTGGTTTTTGGGTGGTCCGCAGG
CGGGCCCTTCTGCCGCAGCGAACGACAGCGACGAATCAACGGTCGTCAAG
ACAAAGCCCAAGTGGAAGAAGCGAAAGCGTCGTCGCTAA
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Coding sequence (CDS) from alignment at C-linearis_contig8:2094308..2097146+

>mRNA_C-linearis_contig8.15631.1 ID=mRNA_C-linearis_contig8.15631.1|Name=mRNA_C-linearis_contig8.15631.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at C-linearis_contig8:2094308..2097146+ (Chordaria linearis ClinC8C monoicous)
CGTCTTGCCAATGCAGCTGCGCACCGATGTCTATCCACGGCGGTAGCTGA
CGGGCCTACACGTGACACGACGGCCTCTACGCCCGCTGCTGGACAGGAAC
AGGACGCCGCAGGCCCTGGCAGCGCTTCTACGGAAACGGATGGGATGGCT
GATCCCAGGCATATCCTGCTCTACACAGGTTCCAAGCGTCTTGCCAATGC
AGCTGCGCACCGATGTCTATCCACGGCGGTAGCTGACGGGCCTACACGTG
ACACGACGGCCTCTACGCCCGCTGCTGGACAGGAACAGGACGCCGCAGGC
CCTGGCAGCGCTTCTACGGAAACGGATGGGATGGCTGATCCCAGGCATAT
CCTGCTCTACACAGGTTCCAAGAGGAATGTTAGAATATCTAGCTCGGTGA
CGGTAGTGAACGGCCTCTACTGGTCCTTCTACGTGGGTGTCCTTGAATCT
CAGCTTCCAACCACAACCTGGGAACCTTGGGGAGGAATGTTAGAATATCT
AGCTCGGTGACGGTAGTGAACGGCCTCTACTGGTCCTTCTACGTGGGTGT
CCTTGAATCTCAGCTTCCAACCACAACCTGGGAACCTTGGGGATACGTAG
GGCTCGGTTTCACGGCCATCATGGCCGCGGCTTCTCACACGTTTGCTAAG
ATACGTAGGGCTCGGTTTCACGGCCATCATGGCCGCGGCTTCTCACACGT
TTGCTAAGCATTGCGTCAGCCAGATATCTTACCTTCCCGATCTGAGGCTG
CTTTCTATCGGGACCCACACCTTCCTTGGGCATTGCGTCAGCCAGATATC
TTACCTTCCCGATCTGAGGCTGCTTTCTATCGGGACCCACACCTTCCTTG
GGAATGAACGGATGCCGCGGCTCGTTAGGCTCGGCGGAACAGTAGTGACC
CGCACACGGCCCGATGCGATGTACTTGACGTTCAAGAATGAACGGATGCC
GCGGCTCGTTAGGCTCGGCGGAACAGTAGTGACCCGCACACGGCCCGATG
CGATGTACTTGACGTTCAAGGTGAGGGGGGACTACTTTAACTCGCTGCTG
GACACTGACGACGGCGTGATTCACAACAAGGAGATGCTCATGAGACTACT
CAAGGCTTCGCCCCACGGAAAAGTGGTGAGGGGGGACTACTTTAACTCGC
TGCTGGACACTGACGACGGCGTGATTCACAACAAGGAGATGCTCATGAGA
CTACTCAAGGCTTCGCCCCACGGAAAAGTGGCGGGCCCTTCTGCCGCAGC
GAACGACAGCGACGAATCAACGGTCGTCAAGACAAAGCCCAAGTGGAAGA
AGCGAAAGCGTCGTCGCTAAGCGGGCCCTTCTGCCGCAGCGAACGACAGC
GACGAATCAACGGTCGTCAAGACAAAGCCCAAGTGGAAGAAGCGAAAGCG
TCGTCGCTAA
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