mRNA_C-linearis_contig8.15627.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI) HSP 1 Score: 558 bits (1438), Expect = 2.130e-192 Identity = 343/499 (68.74%), Postives = 380/499 (76.15%), Query Frame = 1
Query: 70 SRRGGGSDADLVELPPPAIKPKRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---SPSPPFPKTSPTSSKFSAGGGLGAVGKPSPADSKPA-GAGGAAQREELPAPVPTDTLSRAKMILEKKRKAAAAGLPRAGSAASSGAGG-LRKAKITKVAGTPSSSARLDPVKYPASGLLLRDEFRTFIEVERGGERVYEPVEPLVRLLKNFGIADGAGSSDGLPKKQQYETLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRRFVAMNNRENNIWGQQEKYMLP-RWPDMFNVSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLPGGVAASTRYEV------------TDLHASNLPDMPTAEQEEAVRKRLFDMFQPYGAMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAAAR 1512
SRR GS+ DLVELPPP+++ KRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPSPP PK SP SK G + + D KP A Q EE P P PTD +SRAKMILEKKRKAAA R GS ASSGA G LRKAKITK GTPSS+ RLDP+KYPASGLLLRDE+RTF E+E+ GERVYEP++PLVRLLKNFGIAD +DG+ KKQ +ETLVMR T+PAHS SW IN+ PK+HKDFEEI+FHFNPRRRFVAMNNRE NIWGQQEK+ML RWP++FNVSI+VAVQID AGFHVAVDGKYCATF HRTK+PP+GEEL LQVMT+DDYDTNL LVVHEIWWGHKDTMPGLPG R DLHA+ LP MPT++ EE+VRKRL DMFQPYGA+QVRV HR+SKNFGFIKFR+HN+AAKALEEL GAEV G+ MRLSKAAAR
Sbjct: 8 SRRKTGSNDDLVELPPPSVRLKRPTRRKPAAEDLAADVLTPEEEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSPPVPKASPPLSK---GTPVATAAAAAAGDGKPGIAAATVPQAEEKPGPAPTDAVSRAKMILEKKRKAAA----RFGSGASSGAAGVLRKAKITKATGTPSSNPRLDPIKYPASGLLLRDEYRTFAEIEKDGERVYEPLDPLVRLLKNFGIADSNSGADGVAKKQFHETLVMRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEELVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAAR 499
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE) HSP 1 Score: 460 bits (1183), Expect = 1.330e-156 Identity = 222/304 (73.03%), Postives = 252/304 (82.89%), Query Frame = 1
Query: 640 KYPASGLLLRDEFRTFIEVERGGERVYEPVEPLVRLLKNFGIADGAGSSDGLPKKQQYETLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRRFVAMNNRENNIWGQQEKYMLP-RWPDMFNVSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLPGGVAASTRYEV------------TDLHASNLPDMPTAEQEEAVRKRLFDMFQPYGAMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAAAR 1512
KYPASGLLLRDE+RTF E+E+ GER YEP++PLVRLLKNFGIAD +DG+ KKQ +ETLVMR T+PAHS SW IN+ PK+HK+FEEI+FHFNPRRRFVAMNNRE NIWGQQEK+ML RWP++FNVSI++AVQID AGFHVAVDGKYCATF HRTK+PPN EEL LQVMT+DDYDTNL LVVHEIWWGHKDTMPGLPG R DLHA+ LP MP ++ +E+VRKRL DMFQPYGA+QVRV HR+SKNFGFIKFR+HN+AAKALEEL GAEV G+ MRLSKAAAR
Sbjct: 13 KYPASGLLLRDEYRTFAEIEKEGERAYEPLDPLVRLLKNFGIADSNSGADGVVKKQFHETLVMRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKEPNRRTAENWRGSNSNDAFVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSKAAAR 316
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A835YJA2_9STRA (Galectin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA2_9STRA) HSP 1 Score: 164 bits (415), Expect = 3.210e-42 Identity = 112/357 (31.37%), Postives = 175/357 (49.02%), Query Frame = 1
Query: 496 ILEKKRKAAAAGLPRAGSAASSGAGGLRKAKITKVAGTPSSSARLDPVKYPASGLLLRDEFRTFIEVERGGERVYEPVEPLVRLLKNFGIADGAGSSDGLPKKQQYETLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRR----FVAMNNRENNIWGQQEKYMLPRWPDMFNVSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPP--NGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLP------------GGVAASTRYEVTDLHASNLPDMPTAEQEEAVRKRLFDMFQPYGAMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAAAR 1512
+L++KR+A A RA +S GA ++AK VAG + S ++ +P SGL+ ++ E R LV L +F + Q +TLV+R+TVP S WGI++ P++H DF+ +++HFNPR + + N+R + W L +P MF ++ A+QID GFHV + G Y +F HR + +L L+V DDY L +H+IWWG K P P GG T + +LH SN+ +E +R+ L D+F Y V+V+ + +GFI F+ AA+AL+E +G V G+ ++++KA +R
Sbjct: 1 MLQEKREAQQAAAARA---SSFGAPAPKRAKFVTVAGK-TVSTEINKDAFPVSGLVWNQDWDPTQETAR-----------LVVPLTDFAL-------------DQKQTLVLRMTVPDSSDKWGISLCPRDHADFKNVLYHFNPRSKERGGILVQNSRRDGQWEHAVTDRLNEFPAMFGLTFDTAIQIDTWGFHVTLAGDYQLSFKHRRPIEEWQQDGQLVLEVPRTDDYGNPQSLKLHQIWWGKKKYHPNQPTAEELEADHSGIGGGEYETEFR--NLHISNIAHSDDPAEEALIRQELEDLFAKYDVEAVKVI--SGRGYGFINFKSAEGAAQALQETNGTRVHGQDIKVTKARSR 325
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A7S4K6P9_9STRA (Galectin n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6P9_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.950e-28 Identity = 76/240 (31.67%), Postives = 122/240 (50.83%), Query Frame = 1
Query: 817 TLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRRF----VAMNNRENNIWGQQEKYMLPRWPDMFNV-SISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMP----GLPGGVAASTRYEVTDLHASNLPDMPTAEQEEAVRKRLFDMFQPYG-AMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAA 1506
TL ++ P SR + +N++ H+D+ +I+FHFNPR+R V +N+++ IWG L + P +F S+++ +QI G+ V +D K+CA HRT+LPPN LTLQ + DDY G +V+++WWGHK M GV + L S L + + + + + L F+ YG A V V+ + ++ F++ +A AL E+ + RA R A
Sbjct: 261 TLAVKFMAPEDSRRFSLNIAGPGHRDYHDILFHFNPRQREKGGQVVINDKQEGIWGSAVNVPLSQCPIIFGQPSMTLIIQITGDGYDVFIDNKHCARLEHRTQLPPNKCPLTLQFPSTDDYGNPEGWLVYKVWWGHKAIMATGDLSNVAGVNMFSSIHPRKLFVSGLSKIHSEPEVDLRKAELERAFRKYGGAHGVSVIAPTNSSYAFVEVESERQADLALREMQSQYKINRARRTKHEA 500
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A7S2E642_9STRA (Galectin n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E642_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.080e-26 Identity = 76/234 (32.48%), Postives = 116/234 (49.57%), Query Frame = 1
Query: 817 TLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRR----FVAMNNRENNIWGQQEKYMLPRWPDMFN-VSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLPGGVAASTRYEVTD---LHASNLPDMPTAEQEEAVRKRLFDMFQPYG-AMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMR 1491
TL ++ +VP SR + N++ NH D+ ++FHFNPR+R + +N+++ WGQ L + P +F VS ++ +QI F V + K+CA HRT LP L QV + DDY + +V+ +WWG KD G GVA +Y L S L + Q + R L F+ YG A+ +V + F F++ +A AL+E++ L RA R
Sbjct: 111 TLAIKFSVPKESRRFSFNIAGPNHGDYNNVLFHFNPRQRQKGGHLVINDKQEGTWGQGINVPLSQIPVIFGQVSCTLILQITGDCFDVFIGDKHCARLDHRTSLPRENCSLHFQVPSTDDYGSLENWIVYRVWWGRKDLKAGDLEGVAGVNQYSSVHPKKLFISGLTKIKHEAQVDLRRAELERAFRKYGGALGCKVTVPTNSTFAFVEVETERQADIALQEMAHRYRLNRARR 344
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A7S0GIA8_9STRA (Galectin (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIA8_9STRA) HSP 1 Score: 114 bits (286), Expect = 5.270e-24 Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 805 QQYETLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRRF----VAMNNRENNIWGQQEKYMLPRWPDMFNV-SISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLP-GGVA 1245
Q TL ++ P S + IN++ H+DF +++FHFNPR+R + +N R++ IWGQ L P +F S ++ VQ++ GF V +D K+CA HRT+LPP L LQ + DDY + V ++WWGHKD M GGVA
Sbjct: 232 QGNNTLAIKFAAPPESERFSINIAGPGHRDFFDVLFHFNPRQRHKGGQLVVNERQDGIWGQGVAVPLSTLPLIFGQNSCTLTVQVNGGGFDVFIDEKHCARLEHRTQLPPEECNLFLQFPSTDDYGKSENWKVFKVWWGHKDCMAADDLGGVA 384
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: B8LBZ9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBZ9_THAPS) HSP 1 Score: 116 bits (290), Expect = 1.060e-23 Identity = 74/240 (30.83%), Postives = 115/240 (47.92%), Query Frame = 1
Query: 817 TLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRR----RFVAMNNRENNIWGQQEKYMLPRWPDMFNV-SISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLPGGVAASTRYEVTD---LHASNLPDMPTAEQEEAVRKRLFDMFQPYGAMQ--VRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAA 1506
TL ++ P S + IN++ N+ ++ I+FHFNPR + +N+R+ ++WG L P MF + ++ VQ++ GF V V+G +C +RT+LP L LQ + DDY V+ +WWG K++M GVA Y L SNLP + T + + R L F+ YG Q V VL + F F++ +A AL E++ + +A R A
Sbjct: 322 TLAIKFNAPEESSRFSINIAGPNNDNYNNILFHFNPRHFQKGGQLVINDRKESMWGNDISVPLSTLPLMFGTHACTLVVQMNEDGFDVFVEGVHCCRLEYRTELPRGKGSLFLQCPSSDDYGNPEDWSVYRVWWGRKESMARDLNGVAGVNLYSAVHPKKLFVSNLPKLHTDPEVDLRRAELERAFRKYGGPQGAVSVLVPKNSTFAFVEVASEQQADLALLEMANKYRVNKARRTKHEA 561
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A7S4RA39_9STRA (Galectin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA39_9STRA) HSP 1 Score: 107 bits (266), Expect = 5.740e-21 Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 1
Query: 817 TLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRR----FVAMNNRENNIWGQQEKYMLPRWPDMFN-VSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMPGLPGGVAASTRY 1260
TL ++ +VP SR + N++ NH D+ ++FHFNPR+R + +N+++ WGQ L + P +F +S ++ +QI F V + K+CA HRT LP L QV + DDY + +V+ +WWG KD G GVA +Y
Sbjct: 295 TLAIKFSVPKESRRFSFNIAGPNHGDYNNVLFHFNPRQRQKGGHLVINDKQEGTWGQGINVPLSQIPVIFGQISCTLILQITGDCFDVFIGDKHCARLDHRTSLPRENCSLHFQVPSTDDYGSLENWIVYRVWWGRKDLKAGDLEGVAGVNQY 447
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Match: A0A067BYK2_SAPPC (Galectin n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BYK2_SAPPC) HSP 1 Score: 78.2 bits (191), Expect = 1.070e-11 Identity = 65/247 (26.32%), Postives = 108/247 (43.72%), Query Frame = 1
Query: 817 TLVMRVTVPAHSRSWGINVSPKNHKDFEEIVFHFNPRRRF---VAMNNRENNIWGQQEKYMLPRWPDMFN----VSISVAVQIDRAGFHVAVDGKYCATFTHRTKLPPNGEELTLQVMTKDDYDTNLGLVVHEIWWGHKDTMP---------GLPGGVAASTRYEVTDLHASNLPDMPTAEQEEAVRKRLFDMFQPYGAMQVRVLHRDSKNFGFIKFRQHNEAAKALEELSGAEVLGRAMRLSKAAA 1509
TLV+ T+P+ S + +N++ + IV H NPR+ + +N+ WG +++ R P +F + + I +GF + VD + F H+ L G++L L V TKD+Y +V+H +WWGH D +PG D++ NLP EA R L +F + +R+ R FGF+ + + +A+ +L G + G L +AA
Sbjct: 191 TLVVNGTIPSSSCRFVLNLATTDGT----IVCHLNPRKMRGGQILLNSFVEGRWGTA--HIVQRCPLIFGSPTPFRFMLRITITPSGFALFVDEVFVDEFKHQIPLR-EGDDLVLNVPTKDEYGNPEVVVLHNVWWGHTDMAATPARPPPRYNMPGPDMRMPHNNQFDVYVGNLPS-------EANRSDLARLFADFTYDYIRITQR---GFGFVALKNAADVDRAVRDLDGVVLPGFTAHLKISAA 420 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15627.1 >prot_C-linearis_contig8.15627.1 ID=prot_C-linearis_contig8.15627.1|Name=mRNA_C-linearis_contig8.15627.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=504bp MFYVPHDTHTAVDSCRAMALSRSRRGGGSDADLVELPPPAIKPKRPAARRback to top mRNA from alignment at C-linearis_contig8:2010363..2014727- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15627.1 ID=mRNA_C-linearis_contig8.15627.1|Name=mRNA_C-linearis_contig8.15627.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4365bp|location=Sequence derived from alignment at C-linearis_contig8:2010363..2014727- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2010363..2014727- >mRNA_C-linearis_contig8.15627.1 ID=mRNA_C-linearis_contig8.15627.1|Name=mRNA_C-linearis_contig8.15627.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3024bp|location=Sequence derived from alignment at C-linearis_contig8:2010363..2014727- (Chordaria linearis ClinC8C monoicous)back to top |