mRNA_C-linearis_contig8.15621.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15621.1
Unique NamemRNA_C-linearis_contig8.15621.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 3.900e-109
Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 2
Query:   74 EGDRRHDRSYMDR--PGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQPLQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            +G+RRHD     +   GSRSL P +GSRLPFFLPWVP+PA GAAD +P+PPVLTESCGFKLIMGTVGGAGMGFVFG+FLGAMGDMQPLQM+NGREVPQAP REQAR AYKQTA+RSLS+GRNFA+FSA+FMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGP AACFGCVGMA FSA MDKLMGH
Sbjct:    4 DGERRHDECCKQQGTEGSRSLHPQLGSRLPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA)

HSP 1 Score: 201 bits (511), Expect = 4.610e-62
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 2
Query:  209 PSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQPLQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            P PP L ESCG +LIMGT GG GMG +FG+FLGAMGDMQP+Q++NGREVPQAPL EQAR AY  T  RSL + +NFA+FSA+FM SECVIEKMRGK DMMNSVY GC TG AFG+K GP  A  GC+GMAAFSA +D +MGH
Sbjct:   58 PQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.860e-47
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 2
Query:  146 SRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            +RLP+ +PW+P    GA +  P    +TESCG K  +G  GGA MG + G+FLGAM DM P + ++NG+EVPQAPL+EQAR   + T E+ +   RNFA  + +F GSEC++EK RGK D+ N V +GC TGAA   KQGP AA  GC G AAFS  +D +MGH
Sbjct:   58 TRLPYLIPWMPT-FNGAQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A6U3RYY1_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RYY1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.500e-45
Identity = 89/188 (47.34%), Postives = 114/188 (60.64%), Query Frame = 2
Query:   71 AEGDRRHDRSYMDRPGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMG 631
            +   + H R+  D     SL       LP+F PW  KP  G     P    L+ESCG K  +G  GG  MG + G+FLGAM DM P + ++ G+EVPQAPL+EQ R   + TAE+S+   R FA  + +F GSEC++EK RGKTD+ NSV +GC TGAA   K GPS+A FGC G AAFS  +D +MG
Sbjct:   78 SSNSKLHQRAENDANKDMSLSTLTSKSLPYFQPW--KPTSGPEQLPPDFTFLSESCGGKAAIGVFGGGVMGLLMGVFLGAMSDMTPPVTVIGGKEVPQAPLKEQMRTTMRATAEKSMYWCRQFAFITGVFSGSECLVEKYRGKTDVWNSVLSGCVTGAAMQAKAGPSSAAFGCGGFAAFSLVIDSVMG 263          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.640e-41
Identity = 79/162 (48.77%), Postives = 100/162 (61.73%), Query Frame = 2
Query:  152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            +P F P  P P         +P    ESC  + ++G+  G  MG V G+FLGAMGD+ P +  V G+E PQ PL EQAR AY+ TAERS+   R+F   +A+F G+ECVIEK RG+ D  N V +GCA GA      GP+AAC GC G AAFSAA + +MGH
Sbjct:   37 VPIFTPATPHPGV-------NPGWAAESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO)

HSP 1 Score: 147 bits (371), Expect = 3.840e-40
Identity = 81/162 (50.00%), Postives = 103/162 (63.58%), Query Frame = 2
Query:  152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            LP+ LPW  KP     +  P    LT SC  K+ +G +GGAGMG + G+FLGA+ D  P +Q++ GR+VPQAPLREQ R   + TAE+S     NFA  + +F GSEC++EK RGK D+ NSV +GC TGAA   K GP +A  GC G AAFS  +D  M H
Sbjct:  104 LPYPLPW--KPVASPTEPPPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S2AAN4_TRICV (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAN4_TRICV)

HSP 1 Score: 146 bits (369), Expect = 7.060e-40
Identity = 79/164 (48.17%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  152 LPFFLPWVPKPAEGAADGLPSPPV--LTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
            LP+  PW P P   A+   P P    L+ESCG K  +G  GGA  G   G+FLGAM DM P + ++NG+EVPQAPL+EQ R   + T E+ +   RNFA  + +F G+EC++EK RGK D+ NS   GC TGAA   KQGP AA  GC G A FS  +D +  H
Sbjct:   97 LPYLTPWYPIPGPNASAEGPPPDFSWLSESCGGKAAIGVFGGAVCGLFMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQMRTTVRATGEKCIYWSRNFAFITGVFGGTECLVEKYRGKHDVWNSALGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSVFPH 260          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.710e-39
Identity = 79/164 (48.17%), Postives = 105/164 (64.02%), Query Frame = 2
Query:  152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH*D 640
            LP+F+PW  K + G  +  P+   L + C  K  +G  GG  MG + G+FLGA+ D QP +Q+  G++VPQAP +EQAR   + TAE+S+   RNFA  + +F GSEC++EK RGK DM N V +GC TGAA     GP AA  GC G AAFS  +DK+MG+ D
Sbjct:  111 LPYFMPW--KTSGGPTEIPPNYAWLMDGCAGKAAIGVFGGGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGNYD 272          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.750e-38
Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  134 PHMGSRLPFFLPWVPKPAEGAADGLPSP-PVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMG 631
            P     + + +PW    A    D LP     L+ESC  K  +G +GG+  G V G+FLGAM DM P + ++NG+EVPQAPLREQ R   + T E+SL   RNFA  + +F G++C++EK RG  D+ NSV +GC TGAA   KQGP AA  GC G AAFS  +DK+MG
Sbjct:   71 PPQAQYMAYPVPWR---ATSGPDYLPPDFGWLSESCAGKTAIGVLGGSVCGLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235          
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7R9WDT6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.520e-38
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  152 LPFFLPWVPKPAEGAADGLPSPPV--LTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKL 625
            +P   PW P P   ++   P P    L+ESCG K  MG  GGA  G + G+FLGAM DM P + +++G+EVPQAPL+EQ R   + T E+ L   RNFA  + +F G+EC++EK RGK D+ N+   GC TGAA   KQGP AA  GC G A FS  +D +
Sbjct:   86 IPVLTPWYPVPGPNSSMEGPPPDFSWLSESCGGKAAMGVFGGAVCGLLMGVFLGAMSDMTPPVTVIDGKEVPQAPLKEQVRTTLRATGEKCLYWSRNFAFITGVFGGTECLVEKYRGKHDVWNAAIGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF19_9PHAE3.900e-10984.13Mitochondrial import inner membrane translocase su... [more]
A0A836C710_9STRA4.610e-6271.13Mitochondrial import inner membrane translocase su... [more]
A0A7S2P255_9STRA2.860e-4751.83Mitochondrial import inner membrane translocase su... [more]
A0A6U3RYY1_9STRA9.500e-4547.34Mitochondrial import inner membrane translocase su... [more]
A0A7S1TYW7_9STRA3.640e-4148.77Mitochondrial import inner membrane translocase su... [more]
A0A1Z5K7I7_FISSO3.840e-4050.00Mitochondrial import inner membrane translocase su... [more]
A0A7S2AAN4_TRICV7.060e-4048.17Mitochondrial import inner membrane translocase su... [more]
A0A448Z601_9STRA2.710e-3948.17Mitochondrial import inner membrane translocase su... [more]
A0A7S3VGZ9_9STRA4.750e-3848.21Mitochondrial import inner membrane translocase su... [more]
A0A7R9WDT6_9STRA8.520e-3847.20Mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1954662..1956778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.2
Seed ortholog evalue1e-83
Seed eggNOG ortholog2880.D7G569
Preferred nameTIMM22
KEGG rclassRC00017
KEGG koko:K01094,ko:K17790
KEGG TC3.A.8.1
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042721,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
EggNOG free text desc.Mitochondrial import inner membrane translocase subunit
EggNOG OGsCOG5596@1,KOG3225@2759
Ec32 ortholog descriptionMitochondrial import inner membrane translocase subunit TIM22 homolog
Ec32 orthologEc-14_006420.1
EC3.1.3.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Exons4
Model size667
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15621.1prot_C-linearis_contig8.15621.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1954692..1956711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.5835645-UTR-C-linearis_contig8:1954661..19546911622930538.5835645-UTR-C-linearis_contig8:1954661..1954691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1954662..1954691 -
1690881121.3370066-UTR-C-linearis_contig8:1954661..19546911690881121.3370066-UTR-C-linearis_contig8:1954661..1954691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1954662..1954691 -
1622930538.6845195-UTR-C-linearis_contig8:1956711..19567781622930538.6845195-UTR-C-linearis_contig8:1956711..1956778Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1956712..1956778 -
1690881121.3935761-UTR-C-linearis_contig8:1956711..19567781690881121.3935761-UTR-C-linearis_contig8:1956711..1956778Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1956712..1956778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.6006272-CDS-C-linearis_contig8:1954691..19548791622930538.6006272-CDS-C-linearis_contig8:1954691..1954879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1954692..1954879 -
1690881121.3542378-CDS-C-linearis_contig8:1954691..19548791690881121.3542378-CDS-C-linearis_contig8:1954691..1954879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1954692..1954879 -
1622930538.6195748-CDS-C-linearis_contig8:1955446..19555161622930538.6195748-CDS-C-linearis_contig8:1955446..1955516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1955447..1955516 -
1690881121.362876-CDS-C-linearis_contig8:1955446..19555161690881121.362876-CDS-C-linearis_contig8:1955446..1955516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1955447..1955516 -
1622930538.6358407-CDS-C-linearis_contig8:1955684..19557941622930538.6358407-CDS-C-linearis_contig8:1955684..1955794Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1955685..1955794 -
1690881121.3715284-CDS-C-linearis_contig8:1955684..19557941690881121.3715284-CDS-C-linearis_contig8:1955684..1955794Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1955685..1955794 -
1622930538.664997-CDS-C-linearis_contig8:1956509..19567111622930538.664997-CDS-C-linearis_contig8:1956509..1956711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1956510..1956711 -
1690881121.3802848-CDS-C-linearis_contig8:1956509..19567111690881121.3802848-CDS-C-linearis_contig8:1956509..1956711Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1956510..1956711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15621.1

>prot_C-linearis_contig8.15621.1 ID=prot_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
MAEGDRRHDRSYMDRPGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSP
PVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQPLQMVNGREVPQAP
LREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSV
YAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH*
back to top

mRNA from alignment at C-linearis_contig8:1954662..1956778-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15621.1 ID=mRNA_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2117bp|location=Sequence derived from alignment at C-linearis_contig8:1954662..1956778- (Chordaria linearis ClinC8C monoicous)
ACCGCCCATCCCCACGCACGCTTGCTTTCCTCGCTGCCCTCGCTTGCCGG GACCGGTACTCGTTATCATGGCTGAAGGGGACAGACGACATGACCGAAGT TACATGGACAGGCCGGGGTCTAGGTCGCTGCCTCCTCACATGGGGTCAAG ACTACCTTTCTTTCTGCCGTGGGTTCCAAAACCGGCAGAAGGCGCTGCTG ATGGGCTGCCTTCACCGCCCGTGTTGACCGAATCTTGCGGCTTCAAACTT ATCATGGGCACTGTGGGAGGTACGTCTTTTGCGGCCATTCACCTCCTTGA TACGTTACTCAACCTCTCCACGATGTGCGAGCGGTGTTCTTGAGCACAGA TGCTTGTATCAGCAGGTGTTGGGGTATGTAGGGCAGGGCATCCATACCGC GCCCTTCATCACCCGCATTGAGAGCCGTCTTTGCTTTTTTAGTGCATGAA CGTACAACGACAACACCTACCCATCAGTTTATTGAGTATTATTGGGTGTA TCACGTACAACGACTTCTGTCGGTGGGTTCGTACCCCCCCCCCCTCCTGC ATCAAGCCAGGCACGCCGGCGGCGTATGATGCACGAACTGCTGTCGCAAC CTCGCATCTAGACTAATCTATCTACTGCCCTGTACGGCCTGTCCTGCCAC ACCACAGCAACTCGAAGCGTGCGCATTTCCCTCGGTCCTCGTGCGGAAGT GCTACAACGTAGACTGATCAGGATCGGGACATACTGGAATCGAACCTAGG CTTTTCACCCGCTAGGATTCTTACGCACGAGATACGAGCTGATGTGGTGA ACCGTACGTGGCCCAGCCAACGGGTCTTGCTTGTCCCTCTCTACATTTCT TCCAGCTGAGCGACCTACGTACGTGTAGTAGGGTGCGTTGACTGCTGCCC CCACTGCTCCCTCTCCTGGTCGTCGCTGTAGCTAGTAACGAGTGCGGTTA ATCTCACCTTGCGGCTGGTGGTCGCACGGGACAGGGGCGGGGATGGGATT CGTGTTCGGCATTTTCCTCGGGGCGATGGGCGACATGCAACCGTTACAGA TGGTGAATGGACGCGAGGTTCCCCAAGCACCGCTCAGAGAACAGGTATGC ATGTATGCACGCGTGCACCTTCGTACTTGGTATAAACGTTTGCTTGCTGG CATGATAAAGCCTTGTTGATACTTCGAAGTATCAACTTTTGGCTTTCCTC CGGGCTGCATTTCTAGCTACAGCTGTTTTTCACGTCTGGCTGGTTTGCAA CGTTGGTGCCAGGCGCGCCAGGCGTACAAGCAGACAGCGGAGCGATCTCT CAGCTTGGGGAGAAATTTTGCGACGTTCTCAGGTGCAGTTGCAGTTTGCG TCGTTTTGTTTTGAACCGCATACAGCAGGACGGTTTGAAAGAGGAGCTGG GGCGAACGCTTCTTGTTGTTGCGCCAGTACTGTAGTTCCGGCCGTCTTGA GCGCACCGAGAAAGATCGCGTTTGTGGTTACTACTGCTTTACGTGTTGTT CCTTCGCGCTCCCACCATGAACGTGCATCTGTTTGCTCATGACGGTCGTG GACTGCGAACACTCTGCCGCATTATGTGACCTCTCAGAGCTCCGTGTGTT CGTATAGTACGGAGGACGTATTTTTACCTTGACATGAGTCCTCTCGTCTG CAGGCCAAGCAAGAAGACATGCTTTATGCACATATCCTACAAAGACGCAC GCCAGCCCAACAAGGCTTGGCTCTCAAACCTTTCGCGGAAACGTGCGTTC TTGCGAGTTACGAGTGAACACGTTTTTTTTTATCTGAAACCTTTCCTTCT CGCCGTGATACGACCAATCCCTCGGTTCGTCGTACATACCCCGCTCAACA ACGGGTTCCTTGGCGAAAAATGCCTGCCTTGCTCCTCTCTCGCGAAAAGC TATGTTTATGGGGTCCGAGTGCGTGATCGAAAAGATGCGGGGCAAGACCG ACATGATGAACTCCGTCTACGCTGGGTGCGCGACCGGAGCGGCGTTCGGG ATGAAGCAAGGCCCATCAGCGGCGTGCTTCGGCTGTGTGGGGATGGCCGC GTTCTCCGCAGCAATGGACAAGCTCATGGGGCATTAGGACTAGTGTGCTC GGACGATTCTCTGGCGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:1954662..1956778-

>mRNA_C-linearis_contig8.15621.1 ID=mRNA_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig8:1954662..1956778- (Chordaria linearis ClinC8C monoicous)
ATGGCTGAAGGGGACAGACGACATGACCGAAGTTACATGGACAGGCCGGG
GTCTAGGTCGCTGCCTCCTCACATGGGGTCAAGACTACCTTTCTTTCTGC
CGTGGGTTCCAAAACCGGCAGAAGGCGCTGCTGATGGGCTGCCTTCACCG
CCCGTGTTGACCGAATCTTGCGGCTTCAAACTTATCATGGGCACTGTGGG
AGATGGCTGAAGGGGACAGACGACATGACCGAAGTTACATGGACAGGCCG
GGGTCTAGGTCGCTGCCTCCTCACATGGGGTCAAGACTACCTTTCTTTCT
GCCGTGGGTTCCAAAACCGGCAGAAGGCGCTGCTGATGGGCTGCCTTCAC
CGCCCGTGTTGACCGAATCTTGCGGCTTCAAACTTATCATGGGCACTGTG
GGAGGGGCGGGGATGGGATTCGTGTTCGGCATTTTCCTCGGGGCGATGGG
CGACATGCAACCGTTACAGATGGTGAATGGACGCGAGGTTCCCCAAGCAC
CGCTCAGAGAACAGGGGCGGGGATGGGATTCGTGTTCGGCATTTTCCTCG
GGGCGATGGGCGACATGCAACCGTTACAGATGGTGAATGGACGCGAGGTT
CCCCAAGCACCGCTCAGAGAACAGGCGCGCCAGGCGTACAAGCAGACAGC
GGAGCGATCTCTCAGCTTGGGGAGAAATTTTGCGACGTTCTCAGGCGCGC
CAGGCGTACAAGCAGACAGCGGAGCGATCTCTCAGCTTGGGGAGAAATTT
TGCGACGTTCTCAGCTATGTTTATGGGGTCCGAGTGCGTGATCGAAAAGA
TGCGGGGCAAGACCGACATGATGAACTCCGTCTACGCTGGGTGCGCGACC
GGAGCGGCGTTCGGGATGAAGCAAGGCCCATCAGCGGCGTGCTTCGGCTG
TGTGGGGATGGCCGCGTTCTCCGCAGCAATGGACAAGCTCATGGGGCATT
AGCTATGTTTATGGGGTCCGAGTGCGTGATCGAAAAGATGCGGGGCAAGA
CCGACATGATGAACTCCGTCTACGCTGGGTGCGCGACCGGAGCGGCGTTC
GGGATGAAGCAAGGCCCATCAGCGGCGTGCTTCGGCTGTGTGGGGATGGC
CGCGTTCTCCGCAGCAATGGACAAGCTCATGGGGCATTAG
back to top