mRNA_C-linearis_contig8.15621.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 320 bits (820), Expect = 3.900e-109 Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 2
Query: 74 EGDRRHDRSYMDR--PGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQPLQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
+G+RRHD + GSRSL P +GSRLPFFLPWVP+PA GAAD +P+PPVLTESCGFKLIMGTVGGAGMGFVFG+FLGAMGDMQPLQM+NGREVPQAP REQAR AYKQTA+RSLS+GRNFA+FSA+FMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGP AACFGCVGMA FSA MDKLMGH
Sbjct: 4 DGERRHDECCKQQGTEGSRSLHPQLGSRLPFFLPWVPRPAAGAADAMPTPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 201 bits (511), Expect = 4.610e-62 Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 2
Query: 209 PSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQPLQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
P PP L ESCG +LIMGT GG GMG +FG+FLGAMGDMQP+Q++NGREVPQAPL EQAR AY T RSL + +NFA+FSA+FM SECVIEKMRGK DMMNSVY GC TG AFG+K GP A GC+GMAAFSA +D +MGH
Sbjct: 58 PQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 164 bits (415), Expect = 2.860e-47 Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 2
Query: 146 SRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
+RLP+ +PW+P GA + P +TESCG K +G GGA MG + G+FLGAM DM P + ++NG+EVPQAPL+EQAR + T E+ + RNFA + +F GSEC++EK RGK D+ N V +GC TGAA KQGP AA GC G AAFS +D +MGH
Sbjct: 58 TRLPYLIPWMPT-FNGAQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A6U3RYY1_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RYY1_9STRA) HSP 1 Score: 159 bits (402), Expect = 9.500e-45 Identity = 89/188 (47.34%), Postives = 114/188 (60.64%), Query Frame = 2
Query: 71 AEGDRRHDRSYMDRPGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMG 631
+ + H R+ D SL LP+F PW KP G P L+ESCG K +G GG MG + G+FLGAM DM P + ++ G+EVPQAPL+EQ R + TAE+S+ R FA + +F GSEC++EK RGKTD+ NSV +GC TGAA K GPS+A FGC G AAFS +D +MG
Sbjct: 78 SSNSKLHQRAENDANKDMSLSTLTSKSLPYFQPW--KPTSGPEQLPPDFTFLSESCGGKAAIGVFGGGVMGLLMGVFLGAMSDMTPPVTVIGGKEVPQAPLKEQMRTTMRATAEKSMYWCRQFAFITGVFSGSECLVEKYRGKTDVWNSVLSGCVTGAAMQAKAGPSSAAFGCGGFAAFSLVIDSVMG 263
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 147 bits (372), Expect = 3.640e-41 Identity = 79/162 (48.77%), Postives = 100/162 (61.73%), Query Frame = 2
Query: 152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
+P F P P P +P ESC + ++G+ G MG V G+FLGAMGD+ P + V G+E PQ PL EQAR AY+ TAERS+ R+F +A+F G+ECVIEK RG+ D N V +GCA GA GP+AAC GC G AAFSAA + +MGH
Sbjct: 37 VPIFTPATPHPGV-------NPGWAAESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO) HSP 1 Score: 147 bits (371), Expect = 3.840e-40 Identity = 81/162 (50.00%), Postives = 103/162 (63.58%), Query Frame = 2
Query: 152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
LP+ LPW KP + P LT SC K+ +G +GGAGMG + G+FLGA+ D P +Q++ GR+VPQAPLREQ R + TAE+S NFA + +F GSEC++EK RGK D+ NSV +GC TGAA K GP +A GC G AAFS +D M H
Sbjct: 104 LPYPLPW--KPVASPTEPPPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S2AAN4_TRICV (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAN4_TRICV) HSP 1 Score: 146 bits (369), Expect = 7.060e-40 Identity = 79/164 (48.17%), Postives = 100/164 (60.98%), Query Frame = 2
Query: 152 LPFFLPWVPKPAEGAADGLPSPPV--LTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH 634
LP+ PW P P A+ P P L+ESCG K +G GGA G G+FLGAM DM P + ++NG+EVPQAPL+EQ R + T E+ + RNFA + +F G+EC++EK RGK D+ NS GC TGAA KQGP AA GC G A FS +D + H
Sbjct: 97 LPYLTPWYPIPGPNASAEGPPPDFSWLSESCGGKAAIGVFGGAVCGLFMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQMRTTVRATGEKCIYWSRNFAFITGVFGGTECLVEKYRGKHDVWNSALGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSVFPH 260
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.710e-39 Identity = 79/164 (48.17%), Postives = 105/164 (64.02%), Query Frame = 2
Query: 152 LPFFLPWVPKPAEGAADGLPSPPVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMGH*D 640
LP+F+PW K + G + P+ L + C K +G GG MG + G+FLGA+ D QP +Q+ G++VPQAP +EQAR + TAE+S+ RNFA + +F GSEC++EK RGK DM N V +GC TGAA GP AA GC G AAFS +DK+MG+ D
Sbjct: 111 LPYFMPW--KTSGGPTEIPPNYAWLMDGCAGKAAIGVFGGGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGNYD 272
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7S3VGZ9_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGZ9_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.750e-38 Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 2
Query: 134 PHMGSRLPFFLPWVPKPAEGAADGLPSP-PVLTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKLMG 631
P + + +PW A D LP L+ESC K +G +GG+ G V G+FLGAM DM P + ++NG+EVPQAPLREQ R + T E+SL RNFA + +F G++C++EK RG D+ NSV +GC TGAA KQGP AA GC G AAFS +DK+MG
Sbjct: 71 PPQAQYMAYPVPWR---ATSGPDYLPPDFGWLSESCAGKTAIGVLGGSVCGLVMGVFLGAMSDMTPPVTIINGKEVPQAPLREQMRTTLRATGEKSLYWARNFAFITGVFGGTDCLVEKYRGTHDVWNSVISGCVTGAAMQAKQGPQAAAIGCGGFAAFSLVIDKVMG 235
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Match: A0A7R9WDT6_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT6_9STRA) HSP 1 Score: 140 bits (354), Expect = 8.520e-38 Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 2
Query: 152 LPFFLPWVPKPAEGAADGLPSPPV--LTESCGFKLIMGTVGGAGMGFVFGIFLGAMGDMQP-LQMVNGREVPQAPLREQARQAYKQTAERSLSLGRNFATFSAMFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPSAACFGCVGMAAFSAAMDKL 625
+P PW P P ++ P P L+ESCG K MG GGA G + G+FLGAM DM P + +++G+EVPQAPL+EQ R + T E+ L RNFA + +F G+EC++EK RGK D+ N+ GC TGAA KQGP AA GC G A FS +D +
Sbjct: 86 IPVLTPWYPVPGPNSSMEGPPPDFSWLSESCGGKAAMGVFGGAVCGLLMGVFLGAMSDMTPPVTVIDGKEVPQAPLKEQVRTTLRATGEKCLYWSRNFAFITGVFGGTECLVEKYRGKHDVWNAAIGGCVTGAALQAKQGPQAAAIGCGGFAVFSLVIDSV 246 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15621.1 >prot_C-linearis_contig8.15621.1 ID=prot_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp MAEGDRRHDRSYMDRPGSRSLPPHMGSRLPFFLPWVPKPAEGAADGLPSPback to top mRNA from alignment at C-linearis_contig8:1954662..1956778- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15621.1 ID=mRNA_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2117bp|location=Sequence derived from alignment at C-linearis_contig8:1954662..1956778- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1954662..1956778- >mRNA_C-linearis_contig8.15621.1 ID=mRNA_C-linearis_contig8.15621.1|Name=mRNA_C-linearis_contig8.15621.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig8:1954662..1956778- (Chordaria linearis ClinC8C monoicous)back to top |