mRNA_C-linearis_contig8.15608.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15608.1
Unique NamemRNA_C-linearis_contig8.15608.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15608.1 vs. uniprot
Match: D8LUA6_ECTSI (WW domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.050e-27
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 HFDRRRCGYVNVAEIRDALADLRLNLSPEEGKELHSMITLDGGDRLSYAEFIVFVTDPHHSE 186
            HFDRRRCGYVNVAE+RDALADLR+ LS  E  +LHSM+ LDGGDRLSYAEF+VFVTDPHHSE
Sbjct:  784 HFDRRRCGYVNVAEMRDALADLRIKLSAREATDLHSMMALDGGDRLSYAEFVVFVTDPHHSE 845
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BLAST of mRNA_C-linearis_contig8.15608.1 vs. uniprot
Match: A0A6H5J9P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.050e-27
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 HFDRRRCGYVNVAEIRDALADLRLNLSPEEGKELHSMITLDGGDRLSYAEFIVFVTDPHHSE 186
            HFDRRRCGYVNVAE+RDALADLR+ LS  E  +LHSM+ LDGGDRLSYAEF+VFVTDPHHSE
Sbjct:  790 HFDRRRCGYVNVAEMRDALADLRIKLSAREATDLHSMMALDGGDRLSYAEFVVFVTDPHHSE 851
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA6_ECTSI1.050e-2782.26WW domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J9P3_9PHAE1.050e-2782.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1813882..1814509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004290.1
Exons2
Model size189
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930535.1026325-CDS-C-linearis_contig8:1813882..18139721622930535.1026325-CDS-C-linearis_contig8:1813882..1813972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1813883..1813972 -
1690881119.3387296-CDS-C-linearis_contig8:1813882..18139721690881119.3387296-CDS-C-linearis_contig8:1813882..1813972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1813883..1813972 -
1622930535.1220999-CDS-C-linearis_contig8:1814413..18145091622930535.1220999-CDS-C-linearis_contig8:1814413..1814509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1814414..1814509 -
1690881119.3516552-CDS-C-linearis_contig8:1814413..18145091690881119.3516552-CDS-C-linearis_contig8:1814413..1814509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1814414..1814509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15608.1prot_C-linearis_contig8.15608.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1813883..1814509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15608.1

>prot_C-linearis_contig8.15608.1 ID=prot_C-linearis_contig8.15608.1|Name=mRNA_C-linearis_contig8.15608.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=62bp
HFDRRRCGYVNVAEIRDALADLRLNLSPEEGKELHSMITLDGGDRLSYAE
FIVFVTDPHHSE
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mRNA from alignment at C-linearis_contig8:1813882..1814509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15608.1 ID=mRNA_C-linearis_contig8.15608.1|Name=mRNA_C-linearis_contig8.15608.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=628bp|location=Sequence derived from alignment at C-linearis_contig8:1813882..1814509- (Chordaria linearis ClinC8C monoicous)
CACTTCGACCGCCGCCGCTGTGGGTACGTGAACGTCGCGGAGATAAGAGA
TGCTCTGGCTGACCTTCGACTGAACCTGTCTCCGGAGGAAGGAAAGGTGA
GCGAGGACAGTGAGTGGTGAAGTCAGAACCGGGCGGTGAGGCTTGTGGTG
TTCTGTGACACTCGACATATAACCCACTGATATGCAGCTTCCGCCTGTTT
TCTGTATGATGTGTGACTTTCTGTTGCGGGCGGTGAGAAGCAAGTACAGG
CGATGTATATCTAATATTAATAGTTTTGTACTATCCCTCGGGAGTGCTGC
GTGCAAGCTATTCTGGATACGCTGGTGGCACAACCAAGTTTTGGGATCGA
AACGTACCAATCGCGGAGAACTCACATGTCGAGAGTTGTCCTTTGTTGCG
CCTATTGGGCACCACAGAAACCGCAGACCAACGCCGTAACGCAATATCAT
TTCCGCCCACCCGTCACCACCGTACGTGTTCTGTTAAGCCCTCGCCCACC
AACTTAAGCACATGCCTCGATCAAAAACTGTTTACAGGAGCTTCATTCCA
TGATCACACTGGACGGGGGAGATCGCCTGAGCTACGCCGAGTTCATAGTT
TTCGTCACAGACCCGCACCACTCCGAGC
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Coding sequence (CDS) from alignment at C-linearis_contig8:1813882..1814509-

>mRNA_C-linearis_contig8.15608.1 ID=mRNA_C-linearis_contig8.15608.1|Name=mRNA_C-linearis_contig8.15608.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at C-linearis_contig8:1813882..1814509- (Chordaria linearis ClinC8C monoicous)
CACTTCGACCGCCGCCGCTGTGGGTACGTGAACGTCGCGGAGATAAGAGA
TGCTCTGGCTGACCTTCGACTGAACCTGTCTCCGGAGGAAGGAAAGCACT
TCGACCGCCGCCGCTGTGGGTACGTGAACGTCGCGGAGATAAGAGATGCT
CTGGCTGACCTTCGACTGAACCTGTCTCCGGAGGAAGGAAAGGAGCTTCA
TTCCATGATCACACTGGACGGGGGAGATCGCCTGAGCTACGCCGAGTTCA
TAGTTTTCGTCACAGACCCGCACCACTCCGAGGAGCTTCATTCCATGATC
ACACTGGACGGGGGAGATCGCCTGAGCTACGCCGAGTTCATAGTTTTCGT
CACAGACCCGCACCACTCCGAG
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