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Homology
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI) HSP 1 Score: 179 bits (454), Expect = 5.330e-51 Identity = 111/181 (61.33%), Postives = 126/181 (69.61%), Query Frame = 1
Query: 142 FGARHPALMMVAAFLWPSAQSFTAVPVPSIPREGYGAPATAVLKAYVEHQSASSSPEQAGFAPGVVDAAGASRPRAARPAGSFERALQGAALGATTGFATASGALAEYIDPDDVGEIVSSELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDPK 684
FG +L+M+A L SAQ+FT VPS+ AV + H + P +G D AS+ +A RP G FERALQGA+ A TGFA AS LAEYIDPDDVGE+VSS+LPPMWVPLA+G VLT+GI LLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD K
Sbjct: 3 FGMGRASLVMLAIVLRRSAQAFT---VPSM---------MAVRPSQQAH-ALQQHPPASGQVFDATDVVPASKGQAPRPRGQFERALQGASFTAATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQK 170
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.010e-19 Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 400 LQGAALGATTG-FATASGALAEYIDPDDVGEIVSSELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 675
L GAA A G A+A A+A +D + V + ELPPMWVPL +G V+ GI Q SLG+VM+DEAKLG LSGARAAKQSAR R MFK+K
Sbjct: 14 LPGAAATAAFGALASAQAAIAVVVDEEQVVTSMRDELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 2.470e-11 Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 460 EYIDPDDVGEIVSSELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSAR 651
+ +D GE+ ELPPMWVPLA G VL VGI +LQ SLGDVM EA LG+ SGARA K++ R
Sbjct: 449 DTVDDPTSGEVAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.160e-9 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 499 SELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 675
+ELPP+WVP+ +V+ G+ LL SLGDVMN+EA LG +SGA+A K+ R R + KK
Sbjct: 78 AELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.460e-9 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 499 SELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 675
+ELPP+WVP +VL VG+ LL GSLG+V+++E+ LG SGARA K+ R R + KK
Sbjct: 65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.470e-8 Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 487 EIVSSELPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 675
++ +ELPP +VP GV L VG+ LL GSLG+VM++EA LG SGARA K+ R R + KK
Sbjct: 86 DVQFAELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148
BLAST of mRNA_C-linearis_contig8.15600.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.920e-7 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 505 LPPMWVPLAIGVVLTVGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMF 666
LPP WVP+ + + L G+ LLQ SLG+V +DEA LG+ SGARA K+S R++
Sbjct: 89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_003060.1 |
| Exons | 3 |
| Model size | 1338 |
| Cds size | 549 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930533.5430698-UTR-C-linearis_contig8:1744868..1745519 | 1622930533.5430698-UTR-C-linearis_contig8:1744868..1745519 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig8 1744869..1745519 - |
| 1690881118.4430528-UTR-C-linearis_contig8:1744868..1745519 | 1690881118.4430528-UTR-C-linearis_contig8:1744868..1745519 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig8 1744869..1745519 - |
| 1622930533.6096818-UTR-C-linearis_contig8:1749103..1749241 | 1622930533.6096818-UTR-C-linearis_contig8:1749103..1749241 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig8 1749104..1749241 - |
| 1690881118.4872465-UTR-C-linearis_contig8:1749103..1749241 | 1690881118.4872465-UTR-C-linearis_contig8:1749103..1749241 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig8 1749104..1749241 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930533.5581908-CDS-C-linearis_contig8:1745519..1745726 | 1622930533.5581908-CDS-C-linearis_contig8:1745519..1745726 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1745520..1745726 - |
| 1690881118.453846-CDS-C-linearis_contig8:1745519..1745726 | 1690881118.453846-CDS-C-linearis_contig8:1745519..1745726 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1745520..1745726 - |
| 1622930533.5749536-CDS-C-linearis_contig8:1746360..1746525 | 1622930533.5749536-CDS-C-linearis_contig8:1746360..1746525 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1746361..1746525 - |
| 1690881118.465551-CDS-C-linearis_contig8:1746360..1746525 | 1690881118.465551-CDS-C-linearis_contig8:1746360..1746525 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1746361..1746525 - |
| 1622930533.5925117-CDS-C-linearis_contig8:1748926..1749103 | 1622930533.5925117-CDS-C-linearis_contig8:1748926..1749103 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1748927..1749103 - |
| 1690881118.4746795-CDS-C-linearis_contig8:1748926..1749103 | 1690881118.4746795-CDS-C-linearis_contig8:1748926..1749103 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig8 1748927..1749103 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15600.1 >prot_C-linearis_contig8.15600.1 ID=prot_C-linearis_contig8.15600.1|Name=mRNA_C-linearis_contig8.15600.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=183bp
MFGARHPALMMVAAFLWPSAQSFTAVPVPSIPREGYGAPATAVLKAYVEH QSASSSPEQAGFAPGVVDAAGASRPRAARPAGSFERALQGAALGATTGFA TASGALAEYIDPDDVGEIVSSELPPMWVPLAIGVVLTVGISLLQGSLGDV MNDEAKLGALSGARAAKQSARDRDMFKKKDPK* back to topmRNA from alignment at C-linearis_contig8:1744869..1749241- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig8.15600.1 ID=mRNA_C-linearis_contig8.15600.1|Name=mRNA_C-linearis_contig8.15600.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4373bp|location=Sequence derived from alignment at C-linearis_contig8:1744869..1749241- (Chordaria linearis ClinC8C monoicous) CGGGAATGAGAGGGTGCTCAGCAGGCGAGGTTATTCGGCCCCCCGACCAG
GGACGGAGGTTGACGGTAGACTCGACAACTCGACCAGCCAGCGAGCACTT
GGGCCTCACGCCAGCGCACCATCTACACACTCAGCACGATGTTCGGCGCC
AGACACCCCGCTTTGATGATGGTGGCGGCTTTCTTGTGGCCGTCGGCGCA
GTCTTTCACTGCTGTGCCAGTGCCAAGCATCCCGAGGGAGGGGTATGGAG
CTCCTGCTACTGCTGTTTTGAAAGCCTACGTGGAGCATCAGTCCGCCTCA
TCCTCTCCTGAACAGGTGCTTTTGCTGCAAATAGCTGGGCTGGTGTTGAT
GATTTTCTCGGGCTGTGTCGTGTATTGGGGTGTTCGGTGTCGTTCGTATT
TCGAGAAGAGACACCACATGTTGGACTCATGTTGAACAAATACGCCGCCT
GCCTTGCCCGCGGGAACATTTACCGAGTTGTAGCCCTAATGTACTGATTG
TATTGCGTGCCATGGCAAGGAAAATGCACTGCAGAGCTCATCCCTATTGC
CCTCGGTCTTACTTTTCGAACGCCTCGTCAAACCTCGGAAACCTAGAAAA
TCGAAGCCAACCCGGTACAAGCAAGTGCCTACTACAGAGTCAGAGGGAAA
ATATAACTTCCGCAACATGTACAAAAACGTGACGTGTGTGTGTGCGTGTG
TGTGTGTGTTTTCGTCCCATTTTGGCGACAGTCCCTTTCCGATCAAAGCG
AGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTCAGT
GTATTTTTCTGTACAACTAGAACCAACAGGGGTCACACAGGAGGGGGTAA
ACACCGGGGCTTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCC
TCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCC
TTTCCCTCGTCAACATGCAAAGTCGAAGTTTGGTACTCGGGAGCTTTTTC
AGCTATGTTATCGCTTTCACCGGCAAAGTCGCAAAAGAATCACCTTTGCT
TGGAATTAAAATCCAGTTTGCTGCTCGTGGGTTCGAGGTTAAACCACTAG
GCCACCGGGGCGACCGGCATGCACGTACGCGATGAAATTAAACAAGTTTT
TGCAATACAGTGTGGGTGGATGTTAGTTTTCTCCCCCGAAGAAAATACCT
GCAGTAGGCTGAACCACACACAACACAACACAACAACACAACACAACACA
GATTCAATGATCGATCCAACGGTCCAACCGCAGGTCCGCAGAGGTAGAGA
GAACAGGTCGATATCCATCCACCGCCCCGAGCGCACACAGGGTCCGCATA
TATAAAGAGAGATGGGGGGGGCAAACACCTACCGAAACATCGAACCCCCG
GCGACACGACTTCCTCCGGCGAGGCTGTGCAGTGCGTGACGGTGACCCAC
GAAGTAGGCCGCCCACACAACACACACATGGCATGCACACCTAGAACCGT
CTGCTGTACATGTTTTTGTTGCCTGGGAGGGGAGTTTGAGCGAGTCACGG
AATTTATGCGGAGTTCTGAACACGCACACACCGAAGACTCGCGCTAGCTC
GGCGCCGCGGGCATCGATCGCGACACTGACTGCTGGAGGCGACTCCATTG
ACCTAAATAGTGGCCTCTGGTGCGGTAGTTTTGAATTTGGCACGTGCCAG
AGTCGGACAGGGCAACGCTAAATACACCACACACACCGAGCCAACGCTGC
CGATTGTAGACGATATCAAAAATCGACAGGTGCACCGAGGAGTGGTGCAT
CAAAGCTTTCCTATGCACTCTTCGTTTTCGCGATTGGTGGTCTGTAGCGT
TTTTTTGGGCGAAAAGATCGATGCACACGAACACACACACGAACACACAC
ACAGACACACGGACACGGATAGGGCAAAATAGCCCCCCCAGCATTCTGAG
GCCTCGTGTATCGCACATGCAGGGAGGTGTCGATAGGAAAGTTTTTCTCG
GGGAAAAAAAAACTCCGCTGCCGCTCCGTGTTTTTTCCCCCTCAAAGAAA
ACTAGCATAATAAGAACAAATACGGTGGCATCGTTGCTCCCGTCCAAACC
GAAGCCTATCCTCTTGGGGCGGCACCGGATAGCACACATTCTTTGTATTT
TTGCAAAACTCGAAGATTTGACTGAGTTATATACGTTACCGTGGGACTAT
TTGGCATAGGGCTTGAAGTGTCCAAACAGTGCCACGGTAACCTATATAAC
TCAGTCAAATCTTCGAGTTTTGCAAAAATACAAAGAAAATGTGCTATCTG
GTGCCGCCCCAAGAGGATAGCGGCTTCGGTTTGGACGGCAGCAACGATGC
CACCGTGTTTGTTCTTATTATACTGGATTTCGTCGATTTCCTACCTTACC
GAAAGTCGCCCTTTTCTTCAATATCTTGCCAATAAAATAAGAAATAGAAA
ATCAAGCGAAGCGCGACAGTTTGTATACGCACAGCGATACAGGATATTGC
AAAAACTTGTTTAATTTCATCGCGTAATCACGTTTTTGTACCTCTTGCGG
AAGTTATATTTTCCCTGACTGTAGACTCATGTTTACCTGTGGCTGTGTCA
GTCGACTCGTCACACAACAGCGGTGGGACCACGGCCGTTTGCCGTCCAAG
GCTCGCCCTCTCCCCCGCCCTCACATCTGCCCATTGCTGTGGCACCCGTC
CTTTGCTGCTGTGCAGGCTGGCTTTGCTCCAGGCGTTGTTGACGCTGCCG
GTGCCAGCAGGCCGCGCGCGGCGCGACCAGCGGGATCTTTCGAAAGGGCG
CTGCAAGGGGCGGCGTTGGGGGCCACGACCGGTTTCGCGACCGCATCGGG
AGCGTTAGCGGAGTACATCGACCCTGACGATGTGAGCCGACTGCTTCTCG
AGATGTATTTCAAATTTCAATAGCTGTGGGCCATCCAGGTGTGGCCAATT
TCTGCGCAGAATTTGAAGTATTTTGATCCGTGTGGACAAGAGCAGTACAG
CAGTACACCATGCATGCACACGGTCGGGATGTGTGCGTTATTGGGTTGCC
CAGTACACCGGGCCAGGCGTGCGCTTTTCGCTTTTCGCTTTCCTCTTGAC
GACGTGAGCTTTCTTTTCGTTCTGGGTGGACCCCGATTCGATCGGTCTTG
CGATCTTGCGGTGAGACTAGATTTCAAGTCAGAGCGCGGGTACAGCCCAA
AAGAGCTGCGTTCGTGCACGCCTCTCAACCCGACGGAGTACACTCAGTTG
CCTCTCTCGTATAGGCACTAACCATCCCGCCGATGCGAATCGCGGGGGGA
CGACCATCCTCCGCATGCCCCGTGTACGGAGATCGCGTCTCCATCATTTT
CTGGACCACTGGATGCGGAAGAACATACTTCTACGTTGCGAACATACGTG
ATGCGTAACGTTGAACCCAGCCCCCCGCATTGTGTTCCCACCCTACATAT
CAAGCGTCGAAATCCAAATTTGTGGCTGAAGATAACCAACGCACTCAATG
CGAAACCTGTTACAGGTCGGCGAGATCGTCAGCAGCGAGTTGCCGCCGAT
GTGGGTGCCGCTTGCGATCGGGGTCGTGCTCACGGTGGGCATCAGCCTGC
TGCAGGGGAGCTTGGGCGACGTGATGAACGACGAGGCCAAGCTGGGAGCA
CTGTCGGGGGCGAGGGCCGCCAAGCAGAGCGCCCGCGACCGAGACATGTT
CAAGAAGAAGGACCCAAAATAGATTAAGTAGAGGGCGGAAGGGAGGTGTG
CTGGTGATGCGCCTCGTCTCGCGTTATTGTTTTGTTTTGTTGTCCCCGTC
TTTTTCGTTGGGTCGTGTCGTGTCGTGTTGTGTGGAGAGGCAGGCTCGAA
TGCTGATGCTGTTGAATTTTTTTGTCACTGCGTGCGCAAAAGAATGTGGA
ATCCGTCTAAAGAATCACGGGGTGCTCGTGGCGCATCCGATTGCTGCATT
GGGCATCGTCTCGTTGTTGCCTTTGTTTTGATGCTGCTCAAACGCCACAC
AGTTCTGTGGATGAGTTCCATGTTAAGATGTGTGCTGTGTCCTGCGAAAA
ATGGTTGCCTAGGTCATTTGTATCATGTGAAGGTTGCCCGGACGCGACGT
TGGCACGTGTGGGATATGACGTGCACATAAAAAGCACGTGAAGATTATGT
ACGGTGTCTCAGAAACGTTAAGCTGCGAACGTGCTGCAGAGCTTTTTAGA
CGGCTTTCATATTGCCAAAGCTCCGCAACACGGGTTCCTTTGTTACGACC
GTCATCTGGGACTTGGAGCATCGACCCTGGATCATCGTCTTCGGAGGCTA
ACCCAAGTCTTGCGTGTCGCTGCTGGTCTTGATTTTATCGCATCGAAGAA
CCCATCGCTCTCACTGCGTTTTC back to topCoding sequence (CDS) from alignment at C-linearis_contig8:1744869..1749241- >mRNA_C-linearis_contig8.15600.1 ID=mRNA_C-linearis_contig8.15600.1|Name=mRNA_C-linearis_contig8.15600.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at C-linearis_contig8:1744869..1749241- (Chordaria linearis ClinC8C monoicous) ATGTTCGGCGCCAGACACCCCGCTTTGATGATGGTGGCGGCTTTCTTGTG GCCGTCGGCGCAGTCTTTCACTGCTGTGCCAGTGCCAAGCATCCCGAGGG AGGGGTATGGAGCTCCTGCTACTGCTGTTTTGAAAGCCTACGTGGAGCAT CAGTCCGCCTCATCCTCTCCTGAACAGATGTTCGGCGCCAGACACCCCGC TTTGATGATGGTGGCGGCTTTCTTGTGGCCGTCGGCGCAGTCTTTCACTG CTGTGCCAGTGCCAAGCATCCCGAGGGAGGGGTATGGAGCTCCTGCTACT GCTGTTTTGAAAGCCTACGTGGAGCATCAGTCCGCCTCATCCTCTCCTGA ACAGGCTGGCTTTGCTCCAGGCGTTGTTGACGCTGCCGGTGCCAGCAGGC CGCGCGCGGCGCGACCAGCGGGATCTTTCGAAAGGGCGCTGCAAGGGGCG GCGTTGGGGGCCACGACCGGTTTCGCGACCGCATCGGGAGCGTTAGCGGA GTACATCGACCCTGACGATGCTGGCTTTGCTCCAGGCGTTGTTGACGCTG CCGGTGCCAGCAGGCCGCGCGCGGCGCGACCAGCGGGATCTTTCGAAAGG GCGCTGCAAGGGGCGGCGTTGGGGGCCACGACCGGTTTCGCGACCGCATC GGGAGCGTTAGCGGAGTACATCGACCCTGACGATGTCGGCGAGATCGTCA GCAGCGAGTTGCCGCCGATGTGGGTGCCGCTTGCGATCGGGGTCGTGCTC ACGGTGGGCATCAGCCTGCTGCAGGGGAGCTTGGGCGACGTGATGAACGA CGAGGCCAAGCTGGGAGCACTGTCGGGGGCGAGGGCCGCCAAGCAGAGCG CCCGCGACCGAGACATGTTCAAGAAGAAGGACCCAAAATAGGTCGGCGAG ATCGTCAGCAGCGAGTTGCCGCCGATGTGGGTGCCGCTTGCGATCGGGGT CGTGCTCACGGTGGGCATCAGCCTGCTGCAGGGGAGCTTGGGCGACGTGA TGAACGACGAGGCCAAGCTGGGAGCACTGTCGGGGGCGAGGGCCGCCAAG CAGAGCGCCCGCGACCGAGACATGTTCAAGAAGAAGGACCCAAAATAG back to top
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