mRNA_C-linearis_contig8.15592.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15592.1
Unique NamemRNA_C-linearis_contig8.15592.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: D7G096_ECTSI (Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G096_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 3.650e-107
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 3 
Query:  312 MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHLDGTPVAV 800
            MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGG WKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAY+NRIRECVRLHASDPVHLDGTPV V
Sbjct:    1 MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGVWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYDNRIRECVRLHASDPVHLDGTPVVV 163
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A835Z4W6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W6_9STRA)

HSP 1 Score: 268 bits (686), Expect = 5.390e-82
Identity = 123/153 (80.39%), Postives = 139/153 (90.85%), Query Frame = 3 
Query:  324 SPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHLD 782
            SP+KRRD DMMKLMMSDF VHIPDE SMHDF+VAFPGP +TPY+GG WKVHV+LP+EYP++SPSIGFENR++HPNVDEMSGSVCLDVINQTWSPMFDLVNIF +F+PQLL+YPNPTDPLN EAAAL++RDPKAY  RIRE VRLHAS  +  D
Sbjct:    3 SPTKRRDMDMMKLMMSDFAVHIPDECSMHDFMVAFPGPANTPYEGGVWKVHVSLPREYPYRSPSIGFENRIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFTIFLPQLLAYPNPTDPLNSEAAALMLRDPKAYGARIRESVRLHASRAITFD 155
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A7S2AI60_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI60_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.410e-74
Identity = 116/153 (75.82%), Postives = 133/153 (86.93%), Query Frame = 3 
Query:  321 MSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHL 779
            ++P+KRR  DMMKLMMSD+EV+IPDESSMHDF V F GP DTPY+GG WK+HVTLP  YPFKSPSIGF+NRMFHPNVD++SGSVCLDVINQTWSPMF+LVNIF++F+P LL YPNPTDPLNGEAAAL+MRDP AY  RIRE VR  A+  + L
Sbjct:    5 VTPNKRRHQDMMKLMMSDYEVNIPDESSMHDFFVKFEGPPDTPYEGGVWKIHVTLPPAYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMFNLVNIFEVFLPHLLRYPNPTDPLNGEAAALMMRDPDAYALRIREHVRQFATARIDL 157
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A7S2W0L0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0L0_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.790e-72
Identity = 113/158 (71.52%), Postives = 135/158 (85.44%), Query Frame = 3 
Query:  330 SKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHLDGTPVAVA 803
            SKR   DMMKLMMSD+EVHIP+E S+H+F V F GP +TPY+GG WKVHV LP++YPFKSPSIGF+NR++HPNVD++SGSVCLDVINQTWSPMF+LVNIF++F+PQLL YPNPTDPLNGEA AL+MRDP+AY +RIR+ VR  AS  V L G P+  A
Sbjct:   20 SKRMHRDMMKLMMSDYEVHIPNEQSVHEFFVKFHGPAETPYEGGVWKVHVMLPRDYPFKSPSIGFKNRIYHPNVDDLSGSVCLDVINQTWSPMFNLVNIFEIFLPQLLRYPNPTDPLNGEAGALMMRDPEAYASRIRDYVRSFASSTVELKG-PIPAA 176
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A7S2BA17_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA17_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.990e-72
Identity = 119/175 (68.00%), Postives = 140/175 (80.00%), Query Frame = 3 
Query:  264 PHQVHGLHLPSRAETKMLSMS-PSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHLDG 785
            P Q     +  R  + +++ S P+KRR  DMMKLMMSD+EV IPDES MHDF V F GP +TPY+ G+WK+HVTLP +YPFKSPSIGF+NRMFHPNVD++SGSVCLDVINQTWSPMF+LVNIF+ F+P LL YPNPTDPLNGEAAALLMRDP AY  RIR+ VR +AS  + L G
Sbjct:   44 PIQKGRFFIAGRTMSSLVTPSNPNKRRHQDMMKLMMSDYEVLIPDESCMHDFFVKFDGPAETPYENGSWKIHVTLPADYPFKSPSIGFKNRMFHPNVDDISGSVCLDVINQTWSPMFNLVNIFEQFLPHLLRYPNPTDPLNGEAAALLMRDPDAYNLRIRDHVRQYASAKIDLVG 218
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A2D4C6N9_PYTIN (Ubiquitin-conjugating enzyme E2, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6N9_PYTIN)

HSP 1 Score: 239 bits (611), Expect = 9.930e-72
Identity = 109/153 (71.24%), Postives = 134/153 (87.58%), Query Frame = 3 
Query:  321 MSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHL 779
            MS +KRR+ D+MKLMMS+++VH+ DES  +DF V F GP+DTPY+GG WK+HV+LPKEYPFKSPSIGF NR++HPNVD+MSGSVCLDVINQTWSPMFDL+NIF +FIPQLL YPNPTDPLNGEAA+LLM+D +AY  ++RE VR +AS P+ +
Sbjct:    1 MSSNKRREKDVMKLMMSNYDVHLTDESRANDFHVKFHGPKDTPYEGGLWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMFDLLNIFDMFIPQLLRYPNPTDPLNGEAASLLMKDIEAYNAKVREYVRNYASQPIDM 153
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A7S3XS74_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS74_HETAK)

HSP 1 Score: 241 bits (614), Expect = 2.130e-70
Identity = 110/153 (71.90%), Postives = 132/153 (86.27%), Query Frame = 3 
Query:  306 TKMLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHAS 764
            T+ LS SPSKRRD D+++LMMSD+EV +PDE  ++DF VAF GPE TPY+GG W VHVTLP EYP+KSPSIGF NR+FHPNVD+MSGSVCLDVINQTWSPMFDL+NIF++F+PQLL  PNPTDPLNGEAAALL+RDP+AY  +++  V  +AS
Sbjct:   77 TRKLSSSPSKRRDNDLVRLMMSDYEVTLPDEDKIYDFHVAFHGPEKTPYEGGVWDVHVTLPPEYPYKSPSIGFSNRLFHPNVDDMSGSVCLDVINQTWSPMFDLINIFEVFLPQLLQDPNPTDPLNGEAAALLLRDPEAYRAKVQAYVHRYAS 229
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: H3G861_PHYRM (UBC core domain-containing protein n=31 Tax=Peronosporaceae TaxID=4777 RepID=H3G861_PHYRM)

HSP 1 Score: 234 bits (598), Expect = 7.920e-70
Identity = 104/150 (69.33%), Postives = 131/150 (87.33%), Query Frame = 3 
Query:  330 SKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHL 779
            +KRR+TD+MKLMMSD+EVH+ DE+   D  + F GP+DTPY+GG+WK+HVTLPK+YPFKSPSIGF NR++HPNVDE SGSVCLDVINQTWSPMF+LVNIF +FIPQLL YPNP+DPLNGEAA+LLM+D ++Y  +++E VR +AS P+ +
Sbjct:    5 NKRRETDVMKLMMSDYEVHLTDETKTSDLDIKFNGPKDTPYEGGSWKIHVTLPKDYPFKSPSIGFMNRIYHPNVDETSGSVCLDVINQTWSPMFELVNIFDVFIPQLLRYPNPSDPLNGEAASLLMKDAESYNRKVKEYVRNYASQPIEM 154
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: A0A8K1C4X5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4X5_PYTOL)

HSP 1 Score: 234 bits (596), Expect = 1.610e-69
Identity = 105/152 (69.08%), Postives = 132/152 (86.84%), Query Frame = 3 
Query:  324 SPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHL 779
            S +KRR+TD+MKLMMSD+EV + DE+  +DF V F GP +TPY+GG WK+HV+LPKEYPFKSPSIGF NR++HPNVD+MSGSVCLDVINQTWSPMF+LVN+F++FIPQLL YPNP+DPLNGEAA+LLM+D  AY  +++E VR +AS P+ +
Sbjct:    3 SMNKRRETDVMKLMMSDYEVQLTDETKTNDFHVKFHGPAETPYEGGVWKIHVSLPKEYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMFELVNVFEVFIPQLLRYPNPSDPLNGEAASLLMKDADAYNAKVKEYVRNYASQPIDM 154
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BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Match: K3WGM6_GLOUD (UBC core domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WGM6_GLOUD)

HSP 1 Score: 233 bits (593), Expect = 4.260e-69
Identity = 105/153 (68.63%), Postives = 134/153 (87.58%), Query Frame = 3 
Query:  324 SPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGGTWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMFDLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHASDPVHLD 782
            S ++RR+TD+MKLMMSD+EV + DES   DF V F GP+D+PY+GG+WK+HV+LP+EYPFKSPSIGF NR++HPNVD+MSGSVCLDVINQTWSPMF+L+N+F +FIPQLL YPNP+DPLNGEAA+LLM+D ++Y N++RE VR +AS   H+D
Sbjct:    3 SMNRRRETDVMKLMMSDYEVQLTDESKTSDFHVKFHGPKDSPYEGGSWKIHVSLPREYPFKSPSIGFVNRIYHPNVDDMSGSVCLDVINQTWSPMFELLNVFDVFIPQLLRYPNPSDPLNGEAASLLMKDAESYNNKVREYVRTYASQ--HID 153
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G096_ECTSI3.650e-10798.16Ubiquitin-conjugating enzyme type E2 n=1 Tax=Ectoc... [more]
A0A835Z4W6_9STRA5.390e-8280.39Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2AI60_9STRA1.410e-7475.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2W0L0_9STRA1.790e-7271.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BA17_9STRA2.990e-7268.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D4C6N9_PYTIN9.930e-7271.24Ubiquitin-conjugating enzyme E2, putative n=1 Tax=... [more]
A0A7S3XS74_HETAK2.130e-7071.90Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
H3G861_PHYRM7.920e-7069.33UBC core domain-containing protein n=31 Tax=Perono... [more]
A0A8K1C4X5_PYTOL1.610e-6969.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WGM6_GLOUD4.260e-6968.63UBC core domain-containing protein n=2 Tax=Pythiac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1643346..1648503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.7
Seed ortholog evalue1.2e-89
Seed eggNOG ortholog2880.D7G096
Preferred nameUBC4
KEGG koko:K10576
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006111,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043255,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062012,GO:0062014,GO:0065007,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG0416@1,KOG0416@2759
Ec32 ortholog descriptionubiquitin-conjugating enzyme type E2
Ec32 orthologEc-14_005020.1
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons6
Model size2127
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15592.1prot_C-linearis_contig8.15592.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1643888..1647653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.3912086-UTR-C-linearis_contig8:1643345..16435811622930532.3912086-UTR-C-linearis_contig8:1643345..1643581Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1643346..1643581 +
1690881117.9137933-UTR-C-linearis_contig8:1643345..16435811690881117.9137933-UTR-C-linearis_contig8:1643345..1643581Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1643346..1643581 +
1622930532.4089375-UTR-C-linearis_contig8:1643812..16438871622930532.4089375-UTR-C-linearis_contig8:1643812..1643887Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1643813..1643887 +
1690881117.9293613-UTR-C-linearis_contig8:1643812..16438871690881117.9293613-UTR-C-linearis_contig8:1643812..1643887Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1643813..1643887 +
1622930532.5188923-UTR-C-linearis_contig8:1647653..16485031622930532.5188923-UTR-C-linearis_contig8:1647653..1648503Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1647654..1648503 +
1690881117.991505-UTR-C-linearis_contig8:1647653..16485031690881117.991505-UTR-C-linearis_contig8:1647653..1648503Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1647654..1648503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.4280832-CDS-C-linearis_contig8:1643887..16439371622930532.4280832-CDS-C-linearis_contig8:1643887..1643937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1643888..1643937 +
1690881117.9405742-CDS-C-linearis_contig8:1643887..16439371690881117.9405742-CDS-C-linearis_contig8:1643887..1643937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1643888..1643937 +
1622930532.4465234-CDS-C-linearis_contig8:1644340..16444231622930532.4465234-CDS-C-linearis_contig8:1644340..1644423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1644341..1644423 +
1690881117.9519348-CDS-C-linearis_contig8:1644340..16444231690881117.9519348-CDS-C-linearis_contig8:1644340..1644423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1644341..1644423 +
1622930532.4676075-CDS-C-linearis_contig8:1645032..16452001622930532.4676075-CDS-C-linearis_contig8:1645032..1645200Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1645033..1645200 +
1690881117.9619784-CDS-C-linearis_contig8:1645032..16452001690881117.9619784-CDS-C-linearis_contig8:1645032..1645200Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1645033..1645200 +
1622930532.4847054-CDS-C-linearis_contig8:1646575..16471891622930532.4847054-CDS-C-linearis_contig8:1646575..1647189Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1646576..1647189 +
1690881117.9726188-CDS-C-linearis_contig8:1646575..16471891690881117.9726188-CDS-C-linearis_contig8:1646575..1647189Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1646576..1647189 +
1622930532.5025866-CDS-C-linearis_contig8:1647602..16476531622930532.5025866-CDS-C-linearis_contig8:1647602..1647653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1647603..1647653 +
1690881117.9827576-CDS-C-linearis_contig8:1647602..16476531690881117.9827576-CDS-C-linearis_contig8:1647602..1647653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1647603..1647653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15592.1

>prot_C-linearis_contig8.15592.1 ID=prot_C-linearis_contig8.15592.1|Name=mRNA_C-linearis_contig8.15592.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=322bp
MLSMSPSKRRDTDMMKLMMSDFEVHIPDESSMHDFLVAFPGPEDTPYQGG
TWKVHVTLPKEYPFKSPSIGFENRMFHPNVDEMSGSVCLDVINQTWSPMF
DLVNIFKLFIPQLLSYPNPTDPLNGEAAALLMRDPKAYENRIRECVRLHA
SDPVHLDGTPVAVAVVPPPATTTNTNTNSNTNTAAAAAGNTSSSGGGAAA
SSRSSGSGSDESDVSSSFDEQPAVSSANATDGANGTNNNNNHNAAADKKE
GEDDDATMGEAPVTGTAVGTAGEAKRRVAVPGNNDAADGGASSSRSSSGS
DFMMEMEMDETSSDVSVLSDV*
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mRNA from alignment at C-linearis_contig8:1643346..1648503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15592.1 ID=mRNA_C-linearis_contig8.15592.1|Name=mRNA_C-linearis_contig8.15592.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5158bp|location=Sequence derived from alignment at C-linearis_contig8:1643346..1648503+ (Chordaria linearis ClinC8C monoicous)
GCAACCTCCACACTTCACCTTGTCGCCGGACCGAGTTTTCTGTTTGAGGG
TACACGCAGCAGCTCCCCGTCAACATCTCCAGGTTCAGAGAGACTACCGA
GGACACGGACAGCCCATCATTGCCCTCCCGTTGTGTCTTTGCCTCGCCGA
ACGCTCGCCCCCGCGGACAGAAAAATCGCGCATACGCGAAATACAGAAGC
AAGTTCCAACAACAGGCTCTTTTCAACTGACGCGAGGTACGTTGTTTGTA
TTTCAGAAGCAGCAGGGCTCGTAGGGGTACAGGGGACGCCAGCGCTTGTC
CGTCCAGGACGCGGCGTTCCCGGGAATAGTGGTGGGCCGTTTAGTTTTCC
CGGCTGGTCTGGTTTATGCGTTGGCCAGCCATGGGTAATTTGATTGCAGG
TGATGGAATGGGCTTGTTGAACTCTCCTCTGATTGCTGGCCTATGCGCTC
TCTCTTCTCTCAAAAAGGGCCAGGCCTCCACGCAGACACCTCCTCCGCAT
CAAGTCCACGGGCTCCATTTACCATCGAGAGCGGAGACGAAGATGTTGTC
CATGTCACCGTCAAAACGCCGGGACACCGATATGATGAAGCTGTGAGTGC
GCGTGACAACAAGAGTCGTTCGTTTGTTTCTGTTTTTTCCTGTGAGATCT
CCCTCTTCAAAAAATCCCAGACTCATCATCTCGGAAGAAAATTAGACTGC
AGCGAGAACCGAGCACGTGGCTCTCTATCCGTGCCCGCTCGGCCGGCGCT
CGGCCAGCCCACAGAGCACGATTTCCTCTCGCGCATGGCTCAAAAAGGTC
CGGCTTTTTGGCGGTGGCGGCTGCATCGCTGGCGCTTTTTTTATGAAGCC
CCGAAGGTCGCATCACACGTATGTACTACACATGGGCTCCTTGCCGGTTG
ACTCTCCTCTCTCGCCGCCGGATTAGTGTGTGTTTGTGTGTGTGTTTTCG
TTGTCTGACTTTTGTCGCGCCCGCCCCTCTCTCCCGCCGGTGAAGGATGA
TGAGCGACTTCGAGGTGCACATACCTGACGAGTCCAGCATGCACGACTTC
CTAGTTGCTTTCCCTGGGCCAGAAGACAGTGAGTGCTATATTCAAGACTT
TGATGAGAGTCAAGTCTGATTTTTTTTTTCGGGTTGAAGGTTTTAACGTT
CCCCCTCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAC
GGCTCGTGTGACGTCGCGACCTGTCCCCGCGCACCAGCAGGACCCGCCCC
CTACAATTTGTGGCCGAGGGTGTTGCAAGCGGCCTCTGCCCATCCAGCCT
CCCTCGGCATGTTTTTTGCTCGGGGGAAAACCAAAAGTAGCACAACATGC
GTAGGTACGCTTTTGGGATGGATGCATTTCATTCCCTCCTTTGATGCACC
ATATGACTGCCATCTACCTGCATGCATCACACACACATATTTGGCCTGGT
TGATGTGGCGGCATTTTTTCCCATCGCGCGCACGACGCGCACCCACCGCA
GCACGTGAGTCGTCCTCTTGCCATGCGCTTATCCTATCTTTTTCCCCCTT
TTTTGTCTCGTTCTCGTCCGGTGTTTTTGCTGCCGGCCGCGTGGGTGCGT
GGTGTTTGTGTGTGTGTGTGCTTTTTTTTGTATGCCTGCTGAACAACAAA
AAACAACAAACATACTCGACCACGACAAAAATCCCAGCTCCGTACCAGGG
AGGAACCTGGAAGGTGCATGTCACTCTGCCGAAGGAGTACCCCTTCAAGT
CTCCCTCGATCGGCTTCGAAAACCGCATGTTCCACCCGAATGTGGACGAG
ATGTCCGGCTCTGTTTGCTTGGACGTCATCAACCAGACTTGGAGCCCCAT
GTTTGGTAAGAGATCGATTGAGAGTGTGCGAAATCCAACTGCAGTCACAG
CAGGTAATACAATAGTGAAGTGTGACGAGGGTCTCACAACGAATAACTTG
TCTAGAAACGGGGAGACACCCGGTTCAACATCAACATGCACGTGGTGAGG
GTGCCATCAGACTACTCTGCGGTACACACAGATGTACAAGTAGCGTCGAC
CACCTACACACATAGACTATTATAGCACGCATTTATCGTGCGATGTTGGG
GTTGCAAACTTCTCCCTCTGCGCCCTGGTGTGCGTGCTTCACGTCGTTTT
ACGCGTCGCTTTGGACAACAGTCAGCGTCGTCTTCGTTGTAGCGTTCAGG
CGCAAAGAGCTCACTAGCTGTAGGTAGATTTCACGTTTAGGCAAGACATA
TGTACATACATGTAACATCCGTCCACATCATGGAGTCGAACCCAGTTAGT
CCGGCGGCGGCAGAAAGGGGGGCAGTGAGGTACGACCTTTGGCATGCTGA
GGCTTCTTTTTGTTGGGATATAGTATCTGCTTGCCGCCAGCTCTCGGACG
ACCTTTTAAGTATTTCCGTTGTGTCGAGCGGTCTGTTGGTGCGAATCATG
ATGTTGTTTTACAACTCCGAATACCTCTTGCTGCTGCACCAGCTTTCGTG
TAAAATGTACTACGTCGAACGAAGTTTTCGCGGCTTGTTCCGCGTGGATG
GATCTTGTGCATAGGCTCGGCGGTTCCTCGTTTTGGTGACGCATGGTTTG
GACCGCTGGGGCAAGATCTATACAAGCTTGCGTTACGCTCTCACCTCAAC
CATTAGAACTTGTGTGTTAAGTCTGAACGCCCCAACTGCTGCTGGGGTGG
TTGTTGAGAGTAGGTTTGTGGAAGGGCCAGCTCGCAAGTAGCCTCACCGA
ACAGTGTTCATTGGTGTATGCGTAGGGCGATGTCGTCCGACCATTCCTGT
GCACCCGGTGTATCTTCCATGCGCGGGGTGTTGTGAGCTCACAGCTTTAT
CAGCGGCTGGAGTTATTGTTTCCACTTTACGAAAGCCACCAGAGCTTCAA
TAGTTACCTCGACGGGAGCGCGCTGCTTGCTCTGTCGTTGTGTAGTTCGT
GTGCCCCCGCAAGAAACGATCCGCCCGTGCTATTTAAAGTACAGCGGCAA
TGATGCCGGCGCCTCATACATACTGTAGGAGGTTGCAGGTGTCGGGCAAA
TCTCAACCTCTCGTGTCCCTCTTCTTCACAGGAGACCACCAGACAAAAGT
TGCAAGGCCGTGAGCACCCCTGGCCGCCCTCATCACACCACCCGCCCCCC
GCGCCCCGCCCCCCCCCCATGGTCGCTAACCACTTCCGCTCCTCCTTCTC
TCTCCCCCGCTTTTGTCCTTTCCTTGCCAGACCTGGTGAACATCTTCAAG
CTCTTCATCCCGCAGCTGCTGAGCTACCCGAACCCGACCGACCCGCTCAA
CGGCGAGGCGGCGGCGCTGCTCATGCGCGACCCGAAGGCGTACGAGAACC
GCATCCGCGAGTGCGTCCGCCTCCACGCGTCCGACCCCGTCCACCTCGAC
GGAACCCCCGTCGCCGTCGCCGTTGTACCCCCCCCCGCCACCACCACGAA
CACGAACACAAACTCGAACACGAACACGGCCGCCGCCGCTGCCGGTAACA
CCAGCAGCAGCGGCGGCGGCGCCGCGGCAAGCTCGAGGAGCAGCGGCAGC
GGCAGCGACGAATCGGACGTGTCTTCGTCGTTCGACGAACAGCCGGCGGT
GTCGAGCGCGAATGCCACGGACGGCGCGAACGGTACCAACAACAACAACA
ATCACAACGCCGCGGCCGACAAGAAGGAGGGTGAAGACGATGACGCGACG
ATGGGCGAGGCTCCTGTCACCGGCACCGCCGTGGGGACGGCGGGAGAGGC
CAAGCGAAGAGTCGCGGTCCCCGGAAACAACGACGCGGCCGATGGCGGCG
CGAGCAGCAGCAGGAGCTCGAGCGGCTCGGATTTCATGATGGAGGTATGT
AGGTGTACGTGGGGCATTGAAATCACCGCGGCGACAACGCGGGCCGCACA
CACCGCCCGTTTTGGTTGTTCGGGTTCACGACCTCGTGTCTGGCGCGGGA
GGAACGCATCGGCGGCCAGAGGCTTCCGCTCGTACTATGTCGCTTGAGCC
ACCCAGCGCTCTCGTTTCAACTCAAGAACACGCACCAGGTCTTGTCCCGT
CTCGTCTCCCCCTCCTTCGATTTTGCCCATGCAGTATCCGATAGGGTAGG
TGGTGCAGTTCGAGCCTCATGTGTATATTGCACGTACAGTTTGTCCAACG
AAACCTTTCAAGCCCATTCAAACAACGAACGATAGGGTACCAAGTTTCCT
CTAATTTACTCCTCGACCAATTCGTGCATCTCTCACTCGCGACGTCAAAA
ACCTCAGATGGAGATGGACGAAACCTCGAGCGACGTTAGTGTGCTGAGCG
ATGTGTAAGGACGACCTGTTCCCGCCGCTGCCCGTGCCCGCCGCCGCCGC
CACGGGCGTTGTGGAAAGGAGAAAGAAAGGACAGCAGCAAATTGTAATAG
CTTTTTTTACCAGGAGAGTGTGTTGCGCCGCGCGATCTTTTTTTTTGAAC
GGTTCCCATTCCATTCTTTTTTTTTGTTGTGTCTTCCATACGGCAGAAAA
CAAGGCATGGCATGATTGTTGGTTGCTCTGCTGAGGACCCCCAGAAGCAC
GCCGTCGGTCGGCCGGTCTGTCTGTCCCCCCCCTCGTGTGTCAATTTGTT
CTTGTTATAGGTCGTGCGTGGCCCGTCGAACGCGCGTGGCTTTTGTACAT
ACAGAAAGCGTTCCAAGTTTCCCCCCTCCCCTTTCCCCCCTTGTTTTCGC
GGTAAGCCTCTGTATGGGTTGGGTTCGTTCGTTGGCGGGAGGAAAAAACC
CTGGTGTTTTGTGCACGATTGCTCTTGGTTTGGGTTTGGGTTCTAGGGGT
GTTGGGTGTGTGTGTGTGTGTTTAGGGCGGGATGGGGAGGTGGGTGAGTT
TGGGTTCTAGGTAAACTGTCGCCGCCGAATAGACAGGGACCGCAACGACT
TCTCGGTTTGGGATCCGCAACCACTGCTGGGGCTGTACGTAGATGGACAC
CCACCGACCCTGGTGGTACTTGTAGACAAGAGAGTCTCTCCCCTATTTTG
CGTAGGCGGCGGCTGCTGCCTCTGTTTCGTTTGTGTGGTCGTCCGTATCA
TACGCTACACACTCTTGCAACAGTTAGCGGCACGAGGGTGCAAAGCAGGA
GAAAATATATGGTTTGCCTGGGGTCGTTTGGGGGAGGGACAGGTGTGGCC
TAGCGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1643346..1648503+

>mRNA_C-linearis_contig8.15592.1 ID=mRNA_C-linearis_contig8.15592.1|Name=mRNA_C-linearis_contig8.15592.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at C-linearis_contig8:1643346..1648503+ (Chordaria linearis ClinC8C monoicous)
ATGTTGTCCATGTCACCGTCAAAACGCCGGGACACCGATATGATGAAGCT
ATGTTGTCCATGTCACCGTCAAAACGCCGGGACACCGATATGATGAAGCT
GATGATGAGCGACTTCGAGGTGCACATACCTGACGAGTCCAGCATGCACG
ACTTCCTAGTTGCTTTCCCTGGGCCAGAAGACAGATGATGAGCGACTTCG
AGGTGCACATACCTGACGAGTCCAGCATGCACGACTTCCTAGTTGCTTTC
CCTGGGCCAGAAGACACTCCGTACCAGGGAGGAACCTGGAAGGTGCATGT
CACTCTGCCGAAGGAGTACCCCTTCAAGTCTCCCTCGATCGGCTTCGAAA
ACCGCATGTTCCACCCGAATGTGGACGAGATGTCCGGCTCTGTTTGCTTG
GACGTCATCAACCAGACTTGGAGCCCCATGTTTGCTCCGTACCAGGGAGG
AACCTGGAAGGTGCATGTCACTCTGCCGAAGGAGTACCCCTTCAAGTCTC
CCTCGATCGGCTTCGAAAACCGCATGTTCCACCCGAATGTGGACGAGATG
TCCGGCTCTGTTTGCTTGGACGTCATCAACCAGACTTGGAGCCCCATGTT
TGACCTGGTGAACATCTTCAAGCTCTTCATCCCGCAGCTGCTGAGCTACC
CGAACCCGACCGACCCGCTCAACGGCGAGGCGGCGGCGCTGCTCATGCGC
GACCCGAAGGCGTACGAGAACCGCATCCGCGAGTGCGTCCGCCTCCACGC
GTCCGACCCCGTCCACCTCGACGGAACCCCCGTCGCCGTCGCCGTTGTAC
CCCCCCCCGCCACCACCACGAACACGAACACAAACTCGAACACGAACACG
GCCGCCGCCGCTGCCGGTAACACCAGCAGCAGCGGCGGCGGCGCCGCGGC
AAGCTCGAGGAGCAGCGGCAGCGGCAGCGACGAATCGGACGTGTCTTCGT
CGTTCGACGAACAGCCGGCGGTGTCGAGCGCGAATGCCACGGACGGCGCG
AACGGTACCAACAACAACAACAATCACAACGCCGCGGCCGACAAGAAGGA
GGGTGAAGACGATGACGCGACGATGGGCGAGGCTCCTGTCACCGGCACCG
CCGTGGGGACGGCGGGAGAGGCCAAGCGAAGAGTCGCGGTCCCCGGAAAC
AACGACGCGGCCGATGGCGGCGCGAGCAGCAGCAGGAGCTCGAGCGGCTC
GGATTTCATGATGGAGACCTGGTGAACATCTTCAAGCTCTTCATCCCGCA
GCTGCTGAGCTACCCGAACCCGACCGACCCGCTCAACGGCGAGGCGGCGG
CGCTGCTCATGCGCGACCCGAAGGCGTACGAGAACCGCATCCGCGAGTGC
GTCCGCCTCCACGCGTCCGACCCCGTCCACCTCGACGGAACCCCCGTCGC
CGTCGCCGTTGTACCCCCCCCCGCCACCACCACGAACACGAACACAAACT
CGAACACGAACACGGCCGCCGCCGCTGCCGGTAACACCAGCAGCAGCGGC
GGCGGCGCCGCGGCAAGCTCGAGGAGCAGCGGCAGCGGCAGCGACGAATC
GGACGTGTCTTCGTCGTTCGACGAACAGCCGGCGGTGTCGAGCGCGAATG
CCACGGACGGCGCGAACGGTACCAACAACAACAACAATCACAACGCCGCG
GCCGACAAGAAGGAGGGTGAAGACGATGACGCGACGATGGGCGAGGCTCC
TGTCACCGGCACCGCCGTGGGGACGGCGGGAGAGGCCAAGCGAAGAGTCG
CGGTCCCCGGAAACAACGACGCGGCCGATGGCGGCGCGAGCAGCAGCAGG
AGCTCGAGCGGCTCGGATTTCATGATGGAGATGGAGATGGACGAAACCTC
GAGCGACGTTAGTGTGCTGAGCGATGTGTAAATGGAGATGGACGAAACCT
CGAGCGACGTTAGTGTGCTGAGCGATGTGTAA
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