mRNA_C-linearis_contig8.15582.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15582.1
Unique NamemRNA_C-linearis_contig8.15582.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: D7G0A4_ECTSI (Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D7G0A4_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.170e-125
Identity = 189/207 (91.30%), Postives = 195/207 (94.20%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGER--GNVNLTTK-NTKKAGCC 612
            MSRN+SPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDM+EDREVS+EEGAQLAAEYGIQFFETSAK D NVEKGFITIAREVKDRLMADGP+  PG R  GNVNL  + + KK GCC
Sbjct:    1 MSRNESPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPN--PGSRAAGNVNLNAQASKKKTGCC 205
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A836CCB2_9STRA (Rab8A, rab family GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB2_9STRA)

HSP 1 Score: 337 bits (863), Expect = 2.210e-114
Identity = 171/206 (83.01%), Postives = 186/206 (90.29%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTT--KNTKKAGCC 612
            M+R++SPFDMQIKLLMIGDSGVGKTCLLLRYA+D FSQTFITTIGIDFKIKNI+LD+KR+KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF SIRNWVAQIQQHADV VNKILIGNKCD++ +REVS EEGAQLAAEYGIQFFETSAK D NVEKGFIT+AREVK+RLMADG  Q    +GNV L+   K  KK+ CC
Sbjct:    1 MARHESPFDMQIKLLMIGDSGVGKTCLLLRYASDHFSQTFITTIGIDFKIKNIELDTKRVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFQSIRNWVAQIQQHADVHVNKILIGNKCDIDNEREVSTEEGAQLAAEYGIQFFETSAKNDINVEKGFITVAREVKNRLMADGGSQGARTQGNVALSAPAKGGKKSSCC 206
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A024TZG5_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TZG5_9STRA)

HSP 1 Score: 313 bits (802), Expect = 4.970e-105
Identity = 160/211 (75.83%), Postives = 176/211 (83.41%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADG-PHQKP------GERGNVNLTTKNTKKAGCC 612
            M+RN++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFK+KNIDLD K+IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV QIQQHADV VNKIL+GNKCDM +D+ VS EEG  LA EYG++FFETSAK + NVE GFI IA EVK RLM +G PH+K       G++GN      N  K GCC
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKSDLVVNLGKKGNDPTKASNGGKGGCC 211
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: K3WPX9_GLOUD (Uncharacterized protein n=28 Tax=Oomycota TaxID=4762 RepID=K3WPX9_GLOUD)

HSP 1 Score: 311 bits (797), Expect = 2.090e-104
Identity = 160/206 (77.67%), Postives = 178/206 (86.41%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADG-PHQKPGERGNVNLTTKNTK-KAGCC 612
            M+R+++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKNI+LD+K++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWV QIQQHADV VNKILIGNKCDM +D+ VS EEG  LA EYG++FFETSAK + NVE GFI IAREVK+RLM +G PH+K     NVNL+ K    K GCC
Sbjct:    1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIAREVKNRLMEEGGPHKKE----NVNLSAKPAAPKKGCC 202
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A4D9D279_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D279_9STRA)

HSP 1 Score: 305 bits (780), Expect = 8.310e-102
Identity = 154/204 (75.49%), Postives = 171/204 (83.82%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTTKNTKKAGCC 612
            M+R ++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM   R VS EEG  LA ++GIQFFETSAK D NVEK F+TIAREVK+R++ DG  +  G +  V+    N  K  CC
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKK-CC 203
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A7S2V1J6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.550e-101
Identity = 156/196 (79.59%), Postives = 168/196 (85.71%), Query Frame = 1 
Query:   28 MQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMAD-GPHQKPGERGNVNLTTKNTKKAGCC 612
            MQIKLLMIGDSGVGKTCLLLRYAN SFSQTFITTIGIDFKIK IDLD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+KSFNSIRNW++QIQQHADV VNKIL GNKCDM E+R V+ EEG +LA+EYGI FFE SAK D NVE  F+TIAREVKDRL+ D G   + GER N+    K  KK+GCC
Sbjct:    1 MQIKLLMIGDSGVGKTCLLLRYANSSFSQTFITTIGIDFKIKTIDLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRKSFNSIRNWISQIQQHADVHVNKILCGNKCDMSEERAVTTEEGQKLASEYGIGFFEASAKNDVNVETSFVTIAREVKDRLLLDVGTMARGGERVNLG-NAKPAKKSGCC 195
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A3R7WE67_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WE67_9STRA)

HSP 1 Score: 303 bits (777), Expect = 4.730e-101
Identity = 161/214 (75.23%), Postives = 178/214 (83.18%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQ--IWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADG-PHQKP------GERGNVNLTTK-NTKKAGCC 612
            M+RN++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFK+KNIDLD K+IKLQ  IWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV QIQQHADV VNKIL+GNKCDM +D+ VS EEG  LA EYGI+FFETSAK + NVE GFI IA EVK RLM +G PH+K       G++G+ + T   N  K GCC
Sbjct:   10 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQVDIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGIKFFETSAKNNINVEGGFIEIANEVKTRLMEEGGPHKKNDLVVNLGKKGSNDPTKAGNGGKGGCC 223
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A7S2RB79_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB79_9STRA)

HSP 1 Score: 300 bits (769), Expect = 3.900e-100
Identity = 153/197 (77.66%), Postives = 166/197 (84.26%), Query Frame = 1 
Query:   22 FDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTTKNTKKAGCC 612
            FDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKNI+LD+KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWV+QIQQHADV VNKILIGNKCDME+ R VS +EG +LA EYGIQFFETSAK D  V+ GF+ IAREVK+RL+ADGP        N +     +K   CC
Sbjct:    7 FDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRTSFTSIRNWVSQIQQHADVHVNKILIGNKCDMEDQRMVSFDEGKKLAQEYGIQFFETSAKNDIEVDSGFVAIAREVKNRLIADGPTAVRSGIHNPSHQNNKSKGRACC 203
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: A0A6T5Q365_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q365_HETAK)

HSP 1 Score: 300 bits (769), Expect = 4.330e-100
Identity = 152/203 (74.88%), Postives = 173/203 (85.22%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTTKNTKKAGC 609
            M+R+++ +DMQIKLLMIGDSGVGKTCLLLRYAN +FSQTFITTIGIDFKIKNI LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV+QIQQHADV VNKILIGNKCDM+++R V+ EEG +LAAEYGIQFFETSAK D  VE+ F+T+AREVK+RL+ D   +       VNL T+ +    C
Sbjct:    1 MARHENAYDMQIKLLMIGDSGVGKTCLLLRYANAAFSQTFITTIGIDFKIKNITLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRNSFNSIRNWVSQIQQHADVHVNKILIGNKCDMKDERVVTTEEGQKLAAEYGIQFFETSAKNDIQVEESFVTVAREVKERLINDVDRKTDAR---VNLQTQKSSSKSC 200
[Close]
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Match: W7TKL6_9STRA (Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKL6_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.090e-99
Identity = 152/200 (76.00%), Postives = 169/200 (84.50%), Query Frame = 1 
Query:    1 MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQFFETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTTKNTKK 600
            M+R ++PFDMQIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM   R VS EEG  LA ++GIQFFETSAK D NVEK F+TIAREVK+R++ DG  +  G +  V+    N  K
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAK 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A4_ECTSI1.170e-12591.30Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxI... [more]
A0A836CCB2_9STRA2.210e-11483.01Rab8A, rab family GTPase n=2 Tax=Tribonema minus T... [more]
A0A024TZG5_9STRA4.970e-10575.83Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
K3WPX9_GLOUD2.090e-10477.67Uncharacterized protein n=28 Tax=Oomycota TaxID=47... [more]
A0A4D9D279_9STRA8.310e-10275.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2V1J6_9STRA2.550e-10179.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3R7WE67_9STRA4.730e-10175.23Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A7S2RB79_9STRA3.900e-10077.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6T5Q365_HETAK4.330e-10074.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TKL6_9STRA1.090e-9976.00Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1560141..1568916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.6
Seed ortholog evalue1.9e-99
Seed eggNOG ortholog2880.D7G0A4
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
Ec32 ortholog descriptionRab8A, RAB family GTPase
Ec32 orthologEc-14_005110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Exons5
Model size862
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15582.1prot_C-linearis_contig8.15582.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1560388..1568916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.963008-UTR-C-linearis_contig8:1560140..15603871622930530.963008-UTR-C-linearis_contig8:1560140..1560387Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1560141..1560387 -
1690881117.1454034-UTR-C-linearis_contig8:1560140..15603871690881117.1454034-UTR-C-linearis_contig8:1560140..1560387Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1560141..1560387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.9780242-CDS-C-linearis_contig8:1560387..15606031622930530.9780242-CDS-C-linearis_contig8:1560387..1560603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1560388..1560603 -
1690881117.1570718-CDS-C-linearis_contig8:1560387..15606031690881117.1570718-CDS-C-linearis_contig8:1560387..1560603Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1560388..1560603 -
1622930530.9949691-CDS-C-linearis_contig8:1560852..15609181622930530.9949691-CDS-C-linearis_contig8:1560852..1560918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1560853..1560918 -
1690881117.171541-CDS-C-linearis_contig8:1560852..15609181690881117.171541-CDS-C-linearis_contig8:1560852..1560918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1560853..1560918 -
1622930531.0098007-CDS-C-linearis_contig8:1562422..15625911622930531.0098007-CDS-C-linearis_contig8:1562422..1562591Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1562423..1562591 -
1690881117.1850877-CDS-C-linearis_contig8:1562422..15625911690881117.1850877-CDS-C-linearis_contig8:1562422..1562591Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1562423..1562591 -
1622930531.022972-CDS-C-linearis_contig8:1563412..15635151622930531.022972-CDS-C-linearis_contig8:1563412..1563515Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1563413..1563515 -
1690881117.1952965-CDS-C-linearis_contig8:1563412..15635151690881117.1952965-CDS-C-linearis_contig8:1563412..1563515Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1563413..1563515 -
1622930531.037913-CDS-C-linearis_contig8:1568855..15689161622930531.037913-CDS-C-linearis_contig8:1568855..1568916Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1568856..1568916 -
1690881117.2044241-CDS-C-linearis_contig8:1568855..15689161690881117.2044241-CDS-C-linearis_contig8:1568855..1568916Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1568856..1568916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15582.1

>prot_C-linearis_contig8.15582.1 ID=prot_C-linearis_contig8.15582.1|Name=mRNA_C-linearis_contig8.15582.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=205bp
MSRNDSPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKI
KNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFN
SIRNWVAQIQQHADVAVNKILIGNKCDMEEDREVSKEEGAQLAAEYGIQF
FETSAKEDKNVEKGFITIAREVKDRLMADGPHQKPGERGNVNLTTKNTKK
AGCC*
back to top

mRNA from alignment at C-linearis_contig8:1560141..1568916-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15582.1 ID=mRNA_C-linearis_contig8.15582.1|Name=mRNA_C-linearis_contig8.15582.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8776bp|location=Sequence derived from alignment at C-linearis_contig8:1560141..1568916- (Chordaria linearis ClinC8C monoicous)
ATGTCGCGAAATGACAGCCCATTCGACATGCAAATCAAGCTGCTGATGAT
CGGCGACAGCGGTGAGAGAGCGTGTGCTGCGGATGACACTCGTACACTCA
TTGGGCCCCCCCCCCCAACCCCCCTTGCCCCCAACGAGAATTCTCCTACA
TAAGGTCCATCCGGAACAATTTAAATTTGTCCATTTAGTTTTTTCGGGAT
TACTTTCGAAAAAAAAACGAATTGAAAGGTGAAACAAATTTGCAGGGTGG
TACGTGGCGCCACGTACCATTCCATCGGGATGGAAAGCCCACCGCAGGTG
GAAAAAAAATGAGGCCTCCCATCACGTGGGATAGGATGATATTTGCGCCC
ACTTCTGATGGTATTACGATGGGATGGGATGGGATGGTATCGTACTTGTC
GTGATGGGATGGGATGGTAACTGGTCGGACGGTGAGTGTGATGGGATGGG
GGAGCTTTTGCCTTGGCGTGGTGGCGAGAAGATGGTAACACATACATAGA
ACTCTGGTACACAGAGGTGTTACCAGTGCTACCCACCCTCCCACTGCATA
CACATAGAAATAAACAGGAAATAAAACAAATACCAATACTTCGTATTCAT
ATAAGTTTTGTCGCCCTGGAAATGGAAAATACGAAAATACCATGTGTACA
ACCAACCGCGTAGTAGCACGAGACTTAAAATCCGTCTGCCCACCTTGTCA
AAAAACAGCTCTGACAGGGTGTTCTTTAAAATACGTTCTTTACACCACAG
CCAACTGCTGGCACAACAACTCCAGCCGAAGTTCTAAAATTTACTGCTGT
TACTGCTGTGTTTTTGAAGCTCTGGCCGCAAAAATACGCTTACTCCGTTA
AAACAAAAGCAAAAAACAAAAAACAAAACCAAAAACTGGTATTTGAAACG
TCCGACAGCAACCCTACATGTTCAGGGTAACAGAGTGTTACCTTCCCTGG
CTTGCTGGGCGGCAAACCACCGCTTTTACGAGTGCATCGTGCTTCGCCTT
CAAAGCGGCTAGCTCTTGCTCTACTTTCGCAAAGCCGGGGATGAGGCGCC
TGCCTGTTAAGCCTGAGCAACAACATCTGCTCGATCTTACGGGGCAGGGT
ACCGGCACGCAAATCACTGAGGGCCTGCTTGAGGGCGGAAAAGTTCCTCT
CCGTTTGACAACTGGTGGTATCTACGCCTGCGTACAAACGTTCTAGCAAA
GAAACCCACATGCGGCCAGCGGGCAGGCACTACAACGTTCCCTGCCACGT
GTTGCGTGTGTGTGTGTGTAGCGGGTCGAACCCCCTACCCCCCCCTATCC
CACACATTTTCTGCCCTTACACACCCCTCCCTCAGAAAGAACGTTGTGCT
GGATGGGGGGAGGGAGGAGGTGCCAAGATGTACGGGGTGGTATTCGTGGT
AGGTCTCTGAAAAGAGGAATGGGTGAGAGAAGGCTGTTGTCGATGGGATG
GTGGTAACTTCAATAGCCGTGATGGTAAAAAAGATGGGATGGGAAGCGTT
CAAAATCCACCTCCTCTATACGGATGGTGTCTCCGACTGGCGTGGTGGTA
AACTACTGTAGATGGGATGGGAAGCGTTGAAAAACAGCACCTCTGTACTG
ATGGTGTCTCCGACTGGCGTGGTGGTGATGGGATGGTATCTTGTGATGGT
ACCAAAATTCCGACCCGATTACCATCCCATCAAGTGGTGGTATACCATCC
CATCACAACACCACGTATCACCCTGCAAATTTGGCTATGACGGCGGTGTC
GAGCTGCGTCGATGTCCGAGGAGTTTATTGTGTCTGGGTGAAATGAGACA
TTTTTGGCCGAAATGATCCACGGACCCCCCCTAACTACAACACGGAGCCC
CTAACTACAACACGGAACCCTCAAGCAACATTGCAGACCTCCTTGTCGCA
TGGTACAATGTCGTCATTACCATGACAGCACTCAAGGCACACACCCCGCA
CCCTCTAAAGAAGGAGTCTTACATGTTAAATTTATTCATAACCCCCGCTA
AAAAATGCAGGTATTTGAATATACGATTACACCTGCATGCCTACTCAAGT
CATCGCAATCAAAACTCAACCGTTCCCTCTATAACGTCGACGCCAAGACA
GTTGACATGACGAAAGCTTTTTTATACACAAAACACGGTTGAACGCCCTC
ACCGACCCAAGCCTGCAGTGGGAGACCCACACTATCTACAACAAGCATGT
CGCTGTCGCTGCAGCTATCGCTGCCGCCATCACCGCGTGGCTCCGCGCTG
GATGCAGCAGCAGGCATGGGACTCTCTTCCTCTACCTCCATCTGCACTAC
ACCTTCCGTCTCCGAACTTTCAGGCAAAGAGGCCTGCTGCCCAGCTCCAC
TCTTCAGCCAGCTCTGCATCACAAACGCCATCCCTACTTTGTCAGCAGCA
TGCAAAGCCTGCTTGCGCCGATGCGCGCGGTCGCGCGAGATGGTTCCGCC
GCACACCGAGGCGGCGCAATCTCGGGGCAGAGCTGCTGTGTGGTGCGAGT
TGCTGCGGACACAACGCTTGCAGCGGCAGACCCCAAAGGCAATGTGGTCT
GACCTCCACCCGAGGAGGCAGTGGCGTCCTTGTCGTGCCAGTCCTCGTCG
TCGTCATCGGGTGGTGCGTCATCGAGTGCCATGGGAGTAAAAGTGCTACT
GCTGTCCTCGGGTGGCTCGGGTTCTTCGGCAGGGGCAGCGACAGGAGGTT
CCTTGCTCTTATATTTGCCCTTGCTCCTGGCGCGCTTTCGTTTGCTCGGC
CGACCCATGACTGCGGGTGCTGAGCGCTGTTGCAGCTCGTGTGGGTGTGG
GTTGCGCCCTCGCAAGGTTGCGGGTGCGTGTGCGCGCAGGAAAAAAATAA
TCTCACAGCGGCAAAACAAAGTACAGAATGTCTCACGACCAAGAGTTTTT
TTTTTAAATCGGACAAAAAAACAGTCTGGGGAATCTCGAAAGGAATCATT
TGCCGTAGTCTATTATAAATCGTATGGTTCATAATTGCAGGAAAAAGTGA
ACCAAATCGTCTCTAAAATCTGGTTTTTAGTCGATATCTTCATTGATTTT
GACTTAAATCAAAATCGGAGAAAAAAATAGCCTGGGGAATTACAAGAGCT
GTCGAAGTCCGGTCTCAGAATTGTGGTCTGATAAAACACGCCCCAGGAAA
AAGCGAACCAAATTTTCCGGTTATTTGAAGATGACGGCGAAACAATAAAA
AAAAGCTTTCCGAGACGCGCCTGGAGACAGGGCGTTTGCCGGTAATTTAC
TTTCGGTTTTCGGAACAACCCCCACCCCCGAAAAAAGTGCACCTAAGTGC
AGGTCGGAATTATGGACAAATTGTTCCGGACGGACCATATCTGTAGTCTA
GACCAAGACTGCAACAAATCACAGCTTGCTGCGGTCGGCGTGCTGCGGTA
AGTACCTAAATCCCTCCGAGCCATGCTGTCGACGTGTTGTGTGTAGCACT
TGATTAGTGCGACCGAGGTAAATCGTCGGTGGTCTTCAACACAGACAGAC
CGTTTAGCCAGGTATCGGTCGGTGTTGTTGTTGTTGTTGTCTTCACTTTA
AACTCGTTACAGTTGCTAATCCCTAAAATCTAGCAAGATCACAGCCCGTG
GTCACAAAAGTGCTAGAGCCATCAGAGAGTCCTAAAGAACACGCACACTT
TTAGCAGGGAAAGGGTACACAAGCCCGAAGAGGTACACCTTAAACCTACA
GCAAGTTATATGTGTCCAAATCTGAACTGCACGCCCGCAATCTCCATTCG
ACTACAGCAGCATCGCCCCCCCCCCCGTTCCCACTTCCTACCGATGAATT
AGCCGACTACAGCGGAACTGCTGTCTGAAGTGCTGTCTGCACAAAAACAC
ACTGTAGGCGTGGGAACAAGGATGGAGCACGCAGCTGCTGTCTGAAGTGC
TGCCAGAATGACATTCCGCGGACATACAGTGAAAAAGAACAGCCAACCAA
AGCCATCACACCAACTGACAATATCCCGAGTCTATCCCGAACGTCTGTGT
TAGGCACAGTATTGTAAAAATCGACACTGATTAGGAATCAACGAATCCAC
GATGCAGGTACACACTTAAGGCACCCGGGGTATCCGCGCCATCGCTGTGG
CGTCTCTCTACAAAACCAGTGACGTCATCACAGAAACCCAGCACCAACAT
CCATCCAGAAAAAAAGTAATAATTGCCCAACACATAATGTTTGTCCGTGC
GCCACGGCTCGATGTCGTCCGCATGCTCCGGTGCCGCTGCTCCGGTGCCG
CCGTGGCCAGTCCTAGCACGACCACACTCGACCCGCTCCGTCCGTACACG
CTCTCGTCGCTGTCCTTCCCAGCCGGTCCCTCGCTTTCTCCCTCGTTGCA
CTTAGGGTTCTTGGTCTTCAAAAAAAATTCTCGCGCCGAAGGGGTCAACC
AGCCCAGTCGTCAGCTCGTCGCCACCCATCCATCCTCCTTAGATGGCGCA
GCGAAGCCAGGTTACCGAGACAGTACAGCTCCCTCTAGCAAACCTAGGGC
CGTGTACGTAGTGTCCGTTCACCTTTCTGGTGGCGTCTGCCTCCGCGCAC
GAAATGAGATGGACATTGCTGCCTACACCGACGGCCATAAAGATCCGTGC
ATCTGAACTTTTGTGCCTGACGCACCAGTGCCGACCCAACTCCACCGCTG
CGCACGCCTCGCGGCGGGTGCGCAGCAGCAAGAAGGTATCGGTCCACCCG
AGGGTGACCCTGAGGGTGAGTCTAGCCTTGCTCGCTAGAAAGACCCCCCC
CCTCGCTATGGGCCATGCCTAAGCAAAAGCCTTGGCAAGGCAGCGACGGG
AAGAAGGGAGAGTTGTGTTGTGTAGAAATGTAGAAATGGCGCAGCACGGG
TTTCCAGATTAGTCTACAATCTACAAATGGTTTGTTTGAGTTCATTTTTG
TATTTCTTCTTGCGGCAGTCAGTGTCGAGTGTTTGGTAAAGACAGGAGCC
GGGTACGCTTAGATCCGCTCGCCCGACGGCAGCAGAGCGAACAGCTAAGA
TTTTGGTGCTGTTTACAACATTAAAACATGACGTACGTAGTTACGCCATG
CCGCGCTAAATACTGCCGCATGCCCATAGTTTTTAGTTGTTGTGTTGATG
GTCTATTATTATTATAGTTTCGCTGGGTACTTTTGGAGAGGGAGAAGCAA
ACGGCATTGCGGGTGGTGTCCACGCAAGGTTAAGGTTTCATCCAAGCCCG
AGTAGAAATGCAAAAATGACCCACCCCCCCGTTTCGTGGCCCCGTCACCG
AGCTTGTCATGCTGGAGATCGACGTTTCCGCCGCAAATACTCAACGCTCC
GTCTCTCCCCCTATTAACGCGCTCCCTGTTATTTTTCTCTCGCCCCCTTG
CCTTGCCTTGCCTTGCCTTGCCTTGCCTGGCGCACCTGCGTGTCTGAAAA
GGCGTGGGTAAGACGTGCCTGTTGCTGCGCTACGCGAACGACTCGTTCTC
GCAAACGTTCATCACCACAATTGGCATCGACTTCAAGATCAAAAACATCG
ACCTGTGAGTGCCGTCGGGTCAGTCGGGACAGTCCTTCCATGTTAATTAT
TTCTATAGCCGTGAGAGGTCCACCATGCTGTCGCTTCTTTCTTTTTTCGT
CCATGTTCTCACTCGCGGATGCTGGGTCTAAGCTAGTTGGTGTACCGGAC
GGTAGGGCGTTGTGACCGGTCTTGCTGCCATGCGACGGGCCATGATATGT
AGCTCTTTTGGTCTCAGGATTATTTTGGGTGCCTCAAATCAAAACACGTG
CTGGGTTTTGACGACGATAGGCTCTTTTAGTTTTCGAAACGGAAGGGCGG
TGTGAATGTTAATGTTAGTGAATGTTACAGTAGTGTTTTGTCACAACCAC
GCTCGGGCGTACATAGTTGTTGCGTCGTGTCGTCTCGTGCCGGCGGCCTT
TGCTATCTGCGTCGACGCACTTGAAAAATCCTTCGTCGGGCGGGCGGGCG
GGTGGGTGAGCAGGTTGTGAGCAGGTTGCCCAGTAAGCGCGTTGCAGTAT
AGAAGTATAGTAGGATTGGCCAACCAAGAACTATAATTCCTTTCTATTCT
ATGTTTCGATCGCGGGTCGCAAAGTGAAGTGGTAGATGCACGCCTCACCT
TCGTTGCGTGCAGCACGGGATTGTTGCGAGCAGAAAGAGAGAGAGAGAGA
GAGAGAGAGAGAGTTGTCTCCCGCCGCAAGTATCACCTTGACGATGCCTT
GAATCGCATTGCCGCTACCACGACGGGCTCCGTCGCGCCCGTGTGCTACA
CAGTACGATTGTGATTTTTGTGTGTGCGTGTGCTTGTTCTGCTTTTGCTC
TCGACTTCAAAAAAATAAAATAAAGTGATTCGAAGCGAATCAAGCTTCAG
ATCTGGGACACGGCTGGGCAAGAGCGCTTCCGCACCATCACCACCTCCTA
TTTCAGAGGTGCACAGGGCATCCTTCTGGTGTACGATGTTACGGACAAAA
AGTCCTTCAACTCCATCCGGAACTGGGTCGCGCAAATCCAGCAGGTACGA
GAAAGACGTATGTCTTCGGTGCCTGGCTTTGTTTTTCGTGTGATGGTGGC
GAGGTGTGAGATCCGCAGCCAAGCAATTCATGCGAATGTAGCATTTTTGT
CGAGCGTTGTTGCCTTGCCAAGATTCTGTGCTTCGGGGCGGGGTGCGGGG
GGGGGGTGTTGTTGTGTTGTTGCCGGGCCGGCGTGCTTGTTTCCGGAAAG
CACGCGCACGCGCACGCACAGAGCTTCTCCAAGACCATCCACCTCTCGCG
TGGGCGGCGGGGGGTGGGGTTGGTGCGTGTTGCCACTTTTCCCAGCACGG
CGTTGCTTTTGCTTTTGCTTTTGCTGTGACGGACGGCTTGTTGCGTTCGA
AGGTCTGATCTTTCGATCGCCTCTTCGCTGTGCTTGAGGGGCGCGGCCGG
TAGGGGCCCGCGGACACAATGTACGTGAGGGTACAGCCAGTCGCCCCGGT
GGACTAGTGGTTTAACCTCGAACCCACTAGCAGCAAAGTCAGGAGTTCAA
TTCCAAGCAAAGGTGATTATTTTGCGACTTTGCAGGTGAAAGCGATAACA
TAGTAGCTGAAAAAGCTCGTGAGTACCATATTTCGACTTAGCATGTTGAC
GAGGGAAAGGGATGGCTTCACCCTTCTCGCGATAAAATCCAAGGCAAGCA
CCGCAGGAGGAAGGTGGGGCAAAAAAAAACAGAAAAAGAAGAAAAAAGCC
CCAGTGTTTACCCCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGA
AAAATACACTGAACAAGCGTAGTACTCTAAATACACCGCAACGTGTAGTA
CACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAATAAATGGGACGAA
AACACACGCACACACACCACCTAGATACCTAGATCAGAAAGTTCCAAGCA
CTCGACGCCGTGAGGCATGAGGCACCGAACAGCAGAAGGAGGATAAGGGA
GGGGGGGGAGGGAGAGGAGAGGAGAGGAGGGGTGTTCTTCTGGCTTTTCT
GTTATGTCTTGACATCCACAAAGTCTCCCCAAAAGCTCCGATTAAGATGG
CGGCGAGGAGGGCATGGAGAAAACGCCAGCAATAGCACGCACGCTCGCGC
GAAAATTGATCATTTTTTCCCCTTGCGCAGACAAGCAGACCCTCTCTGCA
CTCAGAGCTTTCCGCTATCTCCGCTATCTGTCCAGGACCGCGCGCTTCAA
GATCCTTTGGCGTTTTACCAGCTAAACGTTCGCTCCCTTCACCTCCTTGT
TTGAGCGTGCGTGATGCGTGTCTTTGGCGGCGTACTTTCCGTGCGTCGTC
GCCTATCGGCAAAAAGGGTCCTTTGATTTATAAAAAAAGGGTCCTCGTTC
CTAGCCCTAACCCCCCCCCTGGTCTTATCTTTGTACGAAGTACGAGTATG
TCGTTGAAGACTATTTAACAATTTGTCTTTGTGCCCCGTTTTCTCTTCCT
CGCAATTGCAACCCTGACGTTGCCGCGCTTCCTTCGTCCGTGTCGCAGCA
CGCCGATGTGGCCGTCAACAAGATTTTGATCGGCAACAAGTGTGACATGG
AGGAGGACCGGGAGGTGAGAGGCGCGAAACATTAACATTTGTATCTGTAT
GTTTGTGTGTGTGTACTCCTATAATGGAGTATATACTTCGTAGGAGCATA
CTGCTGTATCGTTACAGTAGGTTTTGCTGCTCGAAATATGCACCTGCTGT
CGGACTTGGAACCTACCCAACTCGACCCCACCCCACCCCACCCCACCCCA
CCCCACCCGAATCACATCGGAACGGACGGCGACCGTGTCCGTCCCGTCCC
TTCGCGCTATCAGGTGAGCAAGGAGGAAGGGGCGCAGCTGGCAGCCGAGT
ACGGCATACAGTTCTTCGAAACCAGCGCCAAGGAAGACAAGAACGTGGAG
AAGGGTTTCATCACCATCGCACGGGAGGTGAAGGACAGGCTCATGGCGGA
CGGCCCTCACCAGAAGCCCGGCGAACGAGGCAACGTGAACCTCACCACAA
AAAACACCAAGAAGGCAGGCTGCTGCTGAGAAGAAAGAACCGTGGCAGCG
AAGCCGCCGCCCGCCGCCCGCCGCGGTCGCGGATCGGTGGACAATTCGGG
GTAGCAGAGCGACACATGAGGGGGGCACGGCTTGGATGGGGGTGAGATGG
GATGTTTGGCACCGGGAAGGAGAAAAAGAAGAAGAGGCGTTGCTGCTGTC
TCCTACGCGGCACAACAGCGCAGCTTTCTCTTGTGTCGCCTTTTTTCGGT
GACGTTACGGATGGGAATGACGTGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:1560141..1568916-

>mRNA_C-linearis_contig8.15582.1 ID=mRNA_C-linearis_contig8.15582.1|Name=mRNA_C-linearis_contig8.15582.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at C-linearis_contig8:1560141..1568916- (Chordaria linearis ClinC8C monoicous)
ATGTCGCGAAATGACAGCCCATTCGACATGCAAATCAAGCTGCTGATGAT
CGGCGACAGCGATGTCGCGAAATGACAGCCCATTCGACATGCAAATCAAG
CTGCTGATGATCGGCGACAGCGGCGTGGGTAAGACGTGCCTGTTGCTGCG
CTACGCGAACGACTCGTTCTCGCAAACGTTCATCACCACAATTGGCATCG
ACTTCAAGATCAAAAACATCGACCTGCGTGGGTAAGACGTGCCTGTTGCT
GCGCTACGCGAACGACTCGTTCTCGCAAACGTTCATCACCACAATTGGCA
TCGACTTCAAGATCAAAAACATCGACCTTGATTCGAAGCGAATCAAGCTT
CAGATCTGGGACACGGCTGGGCAAGAGCGCTTCCGCACCATCACCACCTC
CTATTTCAGAGGTGCACAGGGCATCCTTCTGGTGTACGATGTTACGGACA
AAAAGTCCTTCAACTCCATCCGGAACTGGGTCGCGCAAATCCAGCAGTGA
TTCGAAGCGAATCAAGCTTCAGATCTGGGACACGGCTGGGCAAGAGCGCT
TCCGCACCATCACCACCTCCTATTTCAGAGGTGCACAGGGCATCCTTCTG
GTGTACGATGTTACGGACAAAAAGTCCTTCAACTCCATCCGGAACTGGGT
CGCGCAAATCCAGCAGCACGCCGATGTGGCCGTCAACAAGATTTTGATCG
GCAACAAGTGTGACATGGAGGAGGACCGGGAGCACGCCGATGTGGCCGTC
AACAAGATTTTGATCGGCAACAAGTGTGACATGGAGGAGGACCGGGAGGT
GAGCAAGGAGGAAGGGGCGCAGCTGGCAGCCGAGTACGGCATACAGTTCT
TCGAAACCAGCGCCAAGGAAGACAAGAACGTGGAGAAGGGTTTCATCACC
ATCGCACGGGAGGTGAAGGACAGGCTCATGGCGGACGGCCCTCACCAGAA
GCCCGGCGAACGAGGCAACGTGAACCTCACCACAAAAAACACCAAGAAGG
CAGGCTGCTGCTGAGTGAGCAAGGAGGAAGGGGCGCAGCTGGCAGCCGAG
TACGGCATACAGTTCTTCGAAACCAGCGCCAAGGAAGACAAGAACGTGGA
GAAGGGTTTCATCACCATCGCACGGGAGGTGAAGGACAGGCTCATGGCGG
ACGGCCCTCACCAGAAGCCCGGCGAACGAGGCAACGTGAACCTCACCACA
AAAAACACCAAGAAGGCAGGCTGCTGCTGA
back to top