mRNA_C-linearis_contig8.15544.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15544.1
Unique NamemRNA_C-linearis_contig8.15544.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: D8LCB7_ECTSI (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 1.550e-123
Identity = 238/325 (73.23%), Postives = 266/325 (81.85%), Query Frame = 1 
Query:   61 MGRESVAALFA--VAVLSQQTASFHVPASPATSARSLQHH-PHPTASPYRPHQH-PLLPSRSLRWSPLAAEXXXXXXXXXSSGEGGEKLSRK--AAKKAKARGGAGPAVELKKVAGEQ--QVSKSLVAEVLGAQVGKEGGSTADQVAARKEIERMEAEERERKAKRQERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVEDLLADQEQMNMNRRQRRLMRKEEG-DDEPGA 1008
            MGR+S  A  A  VA+LS+Q+  FH+PA+  +S RSLQ   PH            P LP+RSL   PLAAE  XXXXXXX              AAKKAKARGGAGPAVELKK A +Q  +VSKS+VAEVLGAQ  KEGG+TADQV+ARKEIERMEAEERER AKRQERIDSV++A  ATEGDPDAGSIP+IV++RMLSRMVPFF+LPALGGVGVFV VYVLSH+YDYTIPAYIVAYATQAPFFVAL+GITYAI+SASWDEDREGTFFGF+EAKRNFGNI+EGLRRSSDRMDVED+LADQE+M+MNRRQRR MRKE+G DDEP A
Sbjct:    1 MGRDSALAAVALVVALLSRQSLGFHIPAT--SSRRSLQQRSPHSAXXXXXXXXXXPTLPTRSLLRFPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMSMNRRQRRQMRKEDGGDDEPAA 323
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A6H5L0S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.530e-106
Identity = 183/213 (85.92%), Postives = 201/213 (94.37%), Query Frame = 1 
Query:  316 SRKAAKKAKARGGAGPAVELKKVAGEQ--QVSKSLVAEVLGAQVGKEGGSTADQVAARKEIERMEAEERERKAKRQERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVEDLLADQEQMN 948
            SRKA+KKAKARGGAGPAVELKK A +Q  +VSKS+VAEVLGAQ  KEGGSTADQV+ARK IERMEAEERER AKRQERIDSV++A  ATEGDPDAGSIP+IV++RMLSRMVPFF+LPALGGVGVFVAVYVLSH+YDYTIPAYIVAYATQAPFFVAL+GITYAI+SASWDEDREGTFFGF+EAKRNFGNI+EGLRRSSDRMDVED+LADQ + N
Sbjct:   90 SRKASKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGSTADQVSARKAIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQARAN 302
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A835Z7Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.920e-39
Identity = 90/175 (51.43%), Postives = 132/175 (75.43%), Query Frame = 1 
Query:  475 AARKEIERMEAEERERKAKRQERIDSVLKANEA-TEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVEDLLADQEQMNMNRRQRRLMRKEEGDD 996
            AA++++ RM+ EERER+ + Q++  + +KA +A T+ +PDAG IP +VA+RML+RM+PFF+LP L GVGVFV  +VL+ +YD +    +VA+ATQAPF ++L GITYAILSASWD +REG+  GF+E + N G I+EGLRRSS+R ++++ L +QE+  +NR +RR  +    DD
Sbjct:   94 AAKEDLARMK-EERERRVQAQKQRMADIKAAQAITKDNPDAGVIPDLVANRMLARMIPFFVLPVLAGVGVFVYFFVLAKRYDTSFQPGMVAFATQAPFAISLVGITYAILSASWDPEREGSALGFDEFRSNAGAILEGLRRSSERQELDEQLEEQEKR-VNRAERRRQKGGGSDD 266
[Close]
BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A6U0UN43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UN43_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.160e-26
Identity = 68/183 (37.16%), Postives = 106/183 (57.92%), Query Frame = 1 
Query:  373 LKKVAGEQQVSKSLVAEVLGAQVGKEGGSTADQVAARKEIERMEAEERERKAKRQERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVED 921
            L++    Q+++     EV  AQ       TA Q    +E++++      + A+R  ++D  ++       +P AG IP  V+ RML RMVP F LP + G+  FVA Y    +    +   +VAY+TQAPFF+ L G++Y +LSASWDED EG+F G EE + N G + +G++R+++R D+ED
Sbjct:   62 LERAPAPQEINVGAAEEVNLAQSSARDNLTAGQ----QELQQLRQARASKDAERAAKVDMYVEERAEIRKNPRAGVIPDAVSKRMLGRMVPLFSLPFVLGIAAFVAFYFYGQKTGNQMQPTVVAYSTQAPFFLGLVGLSYGVLSASWDEDEEGSFLGIEEFQTNVGRLFDGVQRAAERRDLED 240
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A7S2STX2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.460e-25
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:  535 QERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSD 903
            Q R++ + +  +    +PDAG IP++VA RML RM+P   +P  GG+ +FV  Y+ + ++D  I   +VAYAT AP+ + L+G+TY ILSASWD + EG+F G EE K N   I +GLRR+ +
Sbjct:   98 QRRLEDMKEVEKVLRENPDAGVIPEVVAQRMLGRMLPLAAVPIFGGIALFVGFYIAATKWDLEIQPTVVAYATTAPWLLGLAGLTYGILSASWDPEVEGSFLGTEEVKLNLSRIADGLRRAGE 220
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A7S2NSH2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NSH2_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 6.480e-23
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 1 
Query:  463 ADQVAARKEIERMEAEERERKAKRQERIDS-------------VLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEG 885
            A +  +RK+  R +AEER RKA    RI++              L   EA   DP AG +P++V+ RML+R+VPF  LP  GG  VFV  Y  + Q +  +P  IVAYATQ    ++ +GITY ++S SWDE++EGT  G E  KRNF ++M G
Sbjct:   86 APEAVSRKQAARSDAEERGRKALEALRIEAGAQPADPFKKAGPALTPEEAEPMDPSAGVMPEVVSQRMLNRVVPFAALPVFGGALVFVGFYYANTQLELDVPPMIVAYATQVLLLLSFAGITYGVMSTSWDEEKEGTLLGTENLKRNF-DLMRG 238
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A0G4F121_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F121_VITBC)

HSP 1 Score: 103 bits (258), Expect = 3.690e-21
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:  583 DPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRS 897
            D +AG++P++V+ R++SR+VPFF+ P       F+  ++L  Q+DY I   I+AY TQ  F +AL G++Y ILS+SW+EDREG+F+G +E KRN   +  G+R++
Sbjct:  113 DGNAGTMPEVVSQRIISRIVPFFLTPLAFAFSTFIGGFLLYSQFDYRIEPSIIAYITQFSFLLALGGVSYGILSSSWEEDREGSFWGADEFKRNIKRVASGVRQT 217
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: R1FQ09_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQ09_EMIHU)

HSP 1 Score: 101 bits (252), Expect = 2.500e-20
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:  562 ANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRR 894
            A E +  DP AG +P++V++RMLSR+VPF  LP  G   VFV  Y  + Q D  +P  ++AYATQA F ++ +GIT+ +LS SWDE+ EG+  G E+  RN   + +G+ R
Sbjct:  106 AEEMSPVDPSAGVMPEVVSNRMLSRVVPFAGLPVFGSFLVFVGAYYANTQLDLDVPPQVIAYATQACFALSFAGITWGVLSTSWDEETEGSLLGTEQVGRNVAMMRDGMAR 216
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A7S2BKL3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKL3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.080e-19
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1 
Query:  490 IERMEAEERERKAKRQERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVEDLLADQEQMN---MNRRQRR 969
            + ++ A+  E  AK  ER   + +  EA + +P AG IP+ VA+RML RM+     P  GG+G+FV  Y+ + Q+D  +   IVA AT  P+ + L+G+TY +LSASWD + EG+  G +E K N   I  G+ RS    +  +    Q++ N    NR QRR
Sbjct:   81 LTKLRAQREEDLAKADERYAELSEVQEALKENPAAGVIPEAVANRMLKRMLTLAAPPIFGGIGLFVVFYISATQWDTDVAPPIVAAATTVPWLLGLAGLTYGVLSASWDPEVEGSALGLDEFKENLKIIGAGVLRSGQDSEFREQYEYQQRKNNAPANREQRR 243
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BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Match: A0A7S3U2G1_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U2G1_9SPIT)

HSP 1 Score: 96.7 bits (239), Expect = 1.920e-18
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:  568 EATEGDPDAGSIPQIVADRMLSRMVPFFMLPALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSASWDEDREGTFFGFEEAKRNFGNIMEGLRR 894
            E T  DP AG +P+ V++RM++R++PF  LP  G   +F   Y L+ Q DY IP   +A ATQA F ++ +GIT+ ++S SWDED EG+  G E+  +N   + +GL R
Sbjct:  131 EMTPLDPTAGVMPERVSNRMIARVIPFAGLPVFGAFALFGGAYYLNTQLDYGIPPQAIALATQAMFALSFAGITWGVMSTSWDEDEEGSLLGIEQVGKNVAMMRDGLER 239
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB7_ECTSI1.550e-12373.23All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L0S3_9PHAE1.530e-10685.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7Y5_9STRA3.920e-3951.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U0UN43_9STRA3.160e-2637.16Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2STX2_9STRA4.460e-2544.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2NSH2_9EUKA6.480e-2342.86Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0G4F121_VITBC3.690e-2144.76Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
R1FQ09_EMIHU2.500e-2045.05Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2BKL3_9STRA3.080e-1938.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3U2G1_9SPIT1.920e-1843.12Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1201210..1205863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue1.9e-103
Seed eggNOG ortholog2880.D8LCB7
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Protein of unknown function (DUF3464)
EggNOG OGs2AEZ6@1,2RXKE@2759
Ec32 ortholog descriptionProtein of unknown function DUF3464
Ec32 orthologEc-14_005350.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2085
Cds size951
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.6799793-UTR-C-linearis_contig8:1201209..12012691622930523.6799793-UTR-C-linearis_contig8:1201209..1201269Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1201210..1201269 +
1690881113.453052-UTR-C-linearis_contig8:1201209..12012691690881113.453052-UTR-C-linearis_contig8:1201209..1201269Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1201210..1201269 +
1622930523.808042-UTR-C-linearis_contig8:1204789..12058631622930523.808042-UTR-C-linearis_contig8:1204789..1205863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1204790..1205863 +
1690881113.5590818-UTR-C-linearis_contig8:1204789..12058631690881113.5590818-UTR-C-linearis_contig8:1204789..1205863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1204790..1205863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.6926575-CDS-C-linearis_contig8:1201269..12016911622930523.6926575-CDS-C-linearis_contig8:1201269..1201691Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1201270..1201691 +
1690881113.4685578-CDS-C-linearis_contig8:1201269..12016911690881113.4685578-CDS-C-linearis_contig8:1201269..1201691Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1201270..1201691 +
1622930523.7138934-CDS-C-linearis_contig8:1202163..12022421622930523.7138934-CDS-C-linearis_contig8:1202163..1202242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1202164..1202242 +
1690881113.4819453-CDS-C-linearis_contig8:1202163..12022421690881113.4819453-CDS-C-linearis_contig8:1202163..1202242Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1202164..1202242 +
1622930523.7254844-CDS-C-linearis_contig8:1202799..12028771622930523.7254844-CDS-C-linearis_contig8:1202799..1202877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1202800..1202877 +
1690881113.494356-CDS-C-linearis_contig8:1202799..12028771690881113.494356-CDS-C-linearis_contig8:1202799..1202877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1202800..1202877 +
1622930523.73689-CDS-C-linearis_contig8:1203414..12034921622930523.73689-CDS-C-linearis_contig8:1203414..1203492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1203415..1203492 +
1690881113.5058138-CDS-C-linearis_contig8:1203414..12034921690881113.5058138-CDS-C-linearis_contig8:1203414..1203492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1203415..1203492 +
1622930523.760131-CDS-C-linearis_contig8:1203904..12040091622930523.760131-CDS-C-linearis_contig8:1203904..1204009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1203905..1204009 +
1690881113.5188131-CDS-C-linearis_contig8:1203904..12040091690881113.5188131-CDS-C-linearis_contig8:1203904..1204009Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1203905..1204009 +
1622930523.776233-CDS-C-linearis_contig8:1204216..12043301622930523.776233-CDS-C-linearis_contig8:1204216..1204330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1204217..1204330 +
1690881113.528035-CDS-C-linearis_contig8:1204216..12043301690881113.528035-CDS-C-linearis_contig8:1204216..1204330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1204217..1204330 +
1622930523.7907202-CDS-C-linearis_contig8:1204714..12047891622930523.7907202-CDS-C-linearis_contig8:1204714..1204789Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1204715..1204789 +
1690881113.539092-CDS-C-linearis_contig8:1204714..12047891690881113.539092-CDS-C-linearis_contig8:1204714..1204789Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1204715..1204789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15544.1prot_C-linearis_contig8.15544.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1201270..1204789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15544.1

>prot_C-linearis_contig8.15544.1 ID=prot_C-linearis_contig8.15544.1|Name=mRNA_C-linearis_contig8.15544.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=317bp
MGRESVAALFAVAVLSQQTASFHVPASPATSARSLQHHPHPTASPYRPHQ
HPLLPSRSLRWSPLAAEEDGGGGGGFSSGEGGEKLSRKAAKKAKARGGAG
PAVELKKVAGEQQVSKSLVAEVLGAQVGKEGGSTADQVAARKEIERMEAE
ERERKAKRQERIDSVLKANEATEGDPDAGSIPQIVADRMLSRMVPFFMLP
ALGGVGVFVAVYVLSHQYDYTIPAYIVAYATQAPFFVALSGITYAILSAS
WDEDREGTFFGFEEAKRNFGNIMEGLRRSSDRMDVEDLLADQEQMNMNRR
QRRLMRKEEGDDEPGA*
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mRNA from alignment at C-linearis_contig8:1201210..1205863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15544.1 ID=mRNA_C-linearis_contig8.15544.1|Name=mRNA_C-linearis_contig8.15544.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4654bp|location=Sequence derived from alignment at C-linearis_contig8:1201210..1205863+ (Chordaria linearis ClinC8C monoicous)
CACGAGAGGGGCGCTGCAGCGGACAGCAGAGACGGACAGGCAAACGACCA
ACGAGCAACCATGGGCAGAGAATCCGTTGCTGCGCTGTTCGCGGTGGCTG
TTCTTTCGCAGCAAACCGCCAGCTTCCACGTCCCGGCAAGCCCGGCTACT
TCCGCACGATCTCTTCAACATCACCCTCATCCCACCGCGTCTCCCTACCG
ACCGCACCAGCACCCGCTGCTGCCGAGCCGGAGCCTGCGATGGTCCCCCC
TAGCCGCGGAGGAAGATGGAGGAGGTGGCGGGGGGTTCAGCTCTGGGGAA
GGGGGAGAGAAATTGTCCCGCAAGGCGGCCAAGAAGGCGAAAGCCAGGGG
GGGCGCTGGGCCGGCCGTGGAGCTGAAGAAGGTCGCCGGGGAGCAGCAGG
TCAGCAAGTCTCTCGTGGCGGAGGTGCTGGGCGCCCAGGTTGGGAAGGAG
GGAGGGTCCACCGCGGACCAGGTAGCGGCCAGGTGGGTGGATGGCGTGCC
CGATGCGATATTTGTTGTGTTCTCGAAATGTTACTTTGGTAGCCATCTTT
GCTCGGGCGGTTGCGGGAGCCTACGAGTACTACTATGTAATGACTGCATG
CGACAGCAACCTCTGCTCTGGGTGTGTGAGAGATGGTGGTCTTGTCCAGC
AAGCCAGCATTGTAGAACCTCCTGACGGTGGTAGTGTGTGGTGCAAAGTA
GATACGGTGCCTAATGATCGTTTTGGGGGGGTTGTCTTGCGTCCTTTACG
CCCTAATCATCACCCTCGCAGATGAAACAAAACAGCCGGACTTTTTAAGA
CTTTAACGTTAGGGTACCTATGACGGCGCCGTTGTGTGGCATTGGGGTGG
TTGTGGAAGATTCTTCTTCGATTCGCCTTCTTCGTGTGCGGTCCAATCAT
AACATCATCGACATGCATGAAGTGCTTCACCTCCCTCGTCTTGCTTGATT
ACAGGAAGGAGATCGAGCGGATGGAAGCGGAAGAGCGCGAGCGAAAAGCG
AAGCGCCAGGAGCGTATCGACAGCGTGCTGAAGGTGACCTTGCCTTGACA
GGAGGCTTATCTCGTTTGATGTCAATCCCAAATCCCAAATCCCACGCCGG
CAAACACCCGCTGGTGCAAGTGTGTACTTCCAAGTAGTCTTTTATGTACA
AGGAGTAGCCCTCCTTACGTGGTGGTATTTCTCGAGAGACAACGATCAAC
CCGAACCTTCGGTGGTGCAACTTCCCAGCGGACGCGTCCCTCGTGGCTCG
ATCGCCGTCCTCAAGCCCAAAGGGGTTGAAAGATGCCGTCGCCTTGCCGG
CATTTTTGCTTCGAACTGCAGTACAACAAAAAAATAGCCAAGGTAGAACA
CCGCCCGCTACCGTACGTCCGATTTTTTGTGCGTGCATATTTATAATTTA
ATTTTCCCCCGAGAATCCGTCGGGTGGGTGCGCCCATTTCTCCTTTTGCC
TACTGCTGTAGTCACAAACGCGAAGGCCGAAGAAAAGCAGCCCCAAGTGC
TTTTTCTTGCGGCTGTTCTGTCTGCCTCTCATTCGTTTTCTTTTGGTTTT
TCGGTCTGTTTTTCTCCGTGCTTCGTTTGCTTGTTCTCAGGCAAACGAGG
CGACGGAGGGAGACCCCGACGCCGGCAGCATCCCGCAGATCGTGGCCGAC
CGCATGCTCTCCAGGATGGTAAGAGAGAGAGAGAGAGGAGATAGATTGGC
CTCGGGCAGGCGCGGGCGAAAAACGAGGCTGTCGACGTTTTGACCACGCT
GATGGCGTTAGTGGTGATGATGATGACGATGTCGGTGGTGTGTGATGGGG
GCGATGAAGGCGATGCCCATGACATTGATGGATGGGAGAAAGGGCGTCTT
TCCGCGTGTGTATTCGCGCGCTTCCTTCACGCATGGTAGGCCTGTACCAG
TAGACAGAACATCAGTATAGACTAACCCCAGAATCGGCGCCTACGAAGCG
TGCGCGTGTTTTCATGTACGGAGTGCTGGGGGTATGCAGTATGACTCGAC
ATGTGCATGCAGCGGCGTGCTGGCGACCCTCCTCGCCGGGGCGCAACGAA
CGCAAACGCCCTAAATCTAGGGCGCCAGGATTGAATTTTCTAATATCGCC
CCCATCGAGCCTGGCAGAGGGTGGCGAGAGTTCACCCCCCCCCCGCACCC
CCGCACCCCCGTTTCCCCTGCTTCTTTTTGTCGCCTTTTCGGTCCTTCCT
CGCAGGTTCCGTTCTTCATGCTGCCGGCACTCGGCGGGGTCGGGGTGTTC
GTGGCCGTGTATGTGCTGTCTCACCAATACGACGTGAGTCGGAGGGGCAT
TTTTTGCGCTTTCGGGTGGGGCGTGAAGGCGTGTTCACTGCTTCGTGGGA
CGGGTTTTTCGGTGTCCCGAGTTCGAGTTTTAGATCGATCGCAGCTCGAG
AGCTTTGCGTGCGTGCTGTTTTTGCTGGTGGTGGTGGTGGTGGTGGTCGT
CGTGTTGGTTGGTCTTGCTCGGCGTCATGAGGCTTCGTGGGTTCTCTCTA
CTCTCCCTTTTTCCCCCACGTTGTGTGTGAGAGGCAGAGAGAGGAAGAGA
CATGGAGCTCGGCAGGCATGCAAGACAAACGGACAGACAATGAATAGACA
TAGTCAGGAGCGCCACGGTCACAGCCAGGAGTGCTCTGCCTCTGTTATCT
TGCGATACTGATTGCTCCTCTCGCCTTCGTCCTCTTGCCCTTTAGTACAC
CATCCCAGCGTATATCGTGGCATACGCTACTCAGGCGCCGTTCTTCGTTG
CTCTCTCCGGGATCACATATGCCATCCTATCGGCTAGCTGGGACGAAGAT
GTGAGAAAGAGAACCTGTTTCTTAGCGTAAGCTCCATGACTTGATTGTTG
TTGTTCGTGGTGGTGGGGGGGGTTCGATGCAAGACAACAAAAGCCGTATC
CGTTCTTTTTTGCGTCTCTGGCCTTGAAGAACAAAACACGCCTCTCTTGC
TTTGGTGGCACCCCTTGCTGATATTCACCACGCGCGTTCGCTGTCTGTCC
TGCACAGAGAGAGGGAACTTTCTTCGGGTTCGAGGAGGCCAAGCGCAACT
TCGGCAACATCATGGAGGGACTGAGGCGCTCCTCTGATAGAATGGACGTG
GAGGATTTGCTTGCGGACCAGGTTAGTCAGGGAGAGACAAAACAGGACCA
AAATAGGACCAACGAACGGGCTTGTTCCTTCTCCGGCCGTCTTTGCTTAA
TCAAAGCCGCGAATGCCAACAAAAACCCAAAAGGCGGGTCGCGTATTTCA
CATAGGGCAGGTAGCTATCCTCGCGCACAAGGTAGGGCCCGCTCTTCAGC
GCCAAACACAGTCCTAAGAAAAAACAATCATCAACAGACTGCTTCCAGTA
TTATTCGGTGTTTCCGGCCGCTTTTAAAACGTTAGGTAACATACCCCACA
CAACACACGAGCTATCTTGCATGACTGCCACAAAAATAAGCGTCTGTAGC
ACTGATCCCTCGCCCCCCTCGCCCCCCCCCCTCCCAACCCCCGGCCCCCC
GACAGGAGCAGATGAATATGAACCGGCGCCAACGACGCCTAATGCGGAAA
GAGGAAGGCGACGACGAGCCTGGTGCATAAAATTAAATTCCCAACCAGCC
TTTTGTCTAATGTTCCCATCACCTAGATGCAGATAGAGGGAGGGTGTTTG
GTGTTGTATGGGAGGGGGAGGAGTGCATGATGCGCAACCCCTTATAGCGC
CTTTTTCGCGCCTGCCGTCGCCAAGGAGTTAAGATATTTCAGCTTCTTTG
GGTGGGCAAAAGCGGGCAGGATGATGCCGGACGGCGTGGCGAGAGAGTGC
CAGCCAGTGAAGTACGACGCTGAGAGCTGCCTAAATAGAAAAATTACGGA
CTACGATACAGCTTTGTGGCCAATGTGAGGAGTTTGCGCAGAATGGATAT
CTCGGGGGCGTTCGGCCAGTTAGACTTGTCGGGGGGCAGCCGGGGGGCTT
TGGGGGAAACACGGCAACCGGCGCGGGCTGCCAGGAGCTACAAGATGACG
CTACACAGCGGCTGGCGTGAGGGGTTGCTCTCGGTCAACAGCGGAAAATC
TCGAAAAATGATTCCCTTGCCGTCTTCGCCGTACAGCAGTAGCCTGCACG
GACTATTGATATGCTCGATCGACACGTGTTCATCCTGCTGTAGAGGTTGT
TTTTTGTTTTTTGCTCGTGTTCGTTCGTGGTCGTTCTTCTTTTCCCATAC
TACGGAAGGTTTTGTGTTGAATGATCAACCGCCATTTGATGTCTGGTGTG
TCCCGCTGCTACTTTTTTTTTGTGTGGACCCACGCCTTTTTCATTCCGCG
GAGTCCCGTCTTTAATGTGGGGATTTTCCATTGTGGGAGTTCTTGATTTT
CTTTCAAAGAATACACCAAGACCAAAGAGTCCAACGCACCAAGGCATTCC
CATGTAGAACTCTGTTTTATCCACAAAAGGCAAGCTATCTCTTAAGCTCA
GCCATGCTCTTGTTCTTTTGCTCGACAGACTGCACGGGGCAACTGAGAGA
ACCGTTTTTTTTGGCAGTCTAGACTTCCGTTTCGAGGTAGCAGTAGTATA
TATTGGACAAGTTTCCCCCTCGGGAGTCTGTTATCGTATATACCAGCGCA
CACCTACGCGGTCCCCTCCCTGGAGTCTGGTCGGGTGCTTTAAACGAAGT
GGTG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1201210..1205863+

>mRNA_C-linearis_contig8.15544.1 ID=mRNA_C-linearis_contig8.15544.1|Name=mRNA_C-linearis_contig8.15544.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at C-linearis_contig8:1201210..1205863+ (Chordaria linearis ClinC8C monoicous)
ATGGGCAGAGAATCCGTTGCTGCGCTGTTCGCGGTGGCTGTTCTTTCGCA
GCAAACCGCCAGCTTCCACGTCCCGGCAAGCCCGGCTACTTCCGCACGAT
CTCTTCAACATCACCCTCATCCCACCGCGTCTCCCTACCGACCGCACCAG
CACCCGCTGCTGCCGAGCCGGAGCCTGCGATGGTCCCCCCTAGCCGCGGA
GGAAGATGGAGGAGGTGGCGGGGGGTTCAGCTCTGGGGAAGGGGGAGAGA
AATTGTCCCGCAAGGCGGCCAAGAAGGCGAAAGCCAGGGGGGGCGCTGGG
CCGGCCGTGGAGCTGAAGAAGGTCGCCGGGGAGCAGCAGGTCAGCAAGTC
TCTCGTGGCGGAGGTGCTGGGCGCCCAGGTTGGGAAGGAGGGAGGGTCCA
CCGCGGACCAGGTAGCGGCCAGATGGGCAGAGAATCCGTTGCTGCGCTGT
TCGCGGTGGCTGTTCTTTCGCAGCAAACCGCCAGCTTCCACGTCCCGGCA
AGCCCGGCTACTTCCGCACGATCTCTTCAACATCACCCTCATCCCACCGC
GTCTCCCTACCGACCGCACCAGCACCCGCTGCTGCCGAGCCGGAGCCTGC
GATGGTCCCCCCTAGCCGCGGAGGAAGATGGAGGAGGTGGCGGGGGGTTC
AGCTCTGGGGAAGGGGGAGAGAAATTGTCCCGCAAGGCGGCCAAGAAGGC
GAAAGCCAGGGGGGGCGCTGGGCCGGCCGTGGAGCTGAAGAAGGTCGCCG
GGGAGCAGCAGGTCAGCAAGTCTCTCGTGGCGGAGGTGCTGGGCGCCCAG
GTTGGGAAGGAGGGAGGGTCCACCGCGGACCAGGTAGCGGCCAGGAAGGA
GATCGAGCGGATGGAAGCGGAAGAGCGCGAGCGAAAAGCGAAGCGCCAGG
AGCGTATCGACAGCGTGCTGAAGGAAGGAGATCGAGCGGATGGAAGCGGA
AGAGCGCGAGCGAAAAGCGAAGCGCCAGGAGCGTATCGACAGCGTGCTGA
AGGCAAACGAGGCGACGGAGGGAGACCCCGACGCCGGCAGCATCCCGCAG
ATCGTGGCCGACCGCATGCTCTCCAGGATGGCAAACGAGGCGACGGAGGG
AGACCCCGACGCCGGCAGCATCCCGCAGATCGTGGCCGACCGCATGCTCT
CCAGGATGGTTCCGTTCTTCATGCTGCCGGCACTCGGCGGGGTCGGGGTG
TTCGTGGCCGTGTATGTGCTGTCTCACCAATACGACGTTCCGTTCTTCAT
GCTGCCGGCACTCGGCGGGGTCGGGGTGTTCGTGGCCGTGTATGTGCTGT
CTCACCAATACGACTACACCATCCCAGCGTATATCGTGGCATACGCTACT
CAGGCGCCGTTCTTCGTTGCTCTCTCCGGGATCACATATGCCATCCTATC
GGCTAGCTGGGACGAAGATTACACCATCCCAGCGTATATCGTGGCATACG
CTACTCAGGCGCCGTTCTTCGTTGCTCTCTCCGGGATCACATATGCCATC
CTATCGGCTAGCTGGGACGAAGATAGAGAGGGAACTTTCTTCGGGTTCGA
GGAGGCCAAGCGCAACTTCGGCAACATCATGGAGGGACTGAGGCGCTCCT
CTGATAGAATGGACGTGGAGGATTTGCTTGCGGACCAGAGAGAGGGAACT
TTCTTCGGGTTCGAGGAGGCCAAGCGCAACTTCGGCAACATCATGGAGGG
ACTGAGGCGCTCCTCTGATAGAATGGACGTGGAGGATTTGCTTGCGGACC
AGGAGCAGATGAATATGAACCGGCGCCAACGACGCCTAATGCGGAAAGAG
GAAGGCGACGACGAGCCTGGTGCATAAGAGCAGATGAATATGAACCGGCG
CCAACGACGCCTAATGCGGAAAGAGGAAGGCGACGACGAGCCTGGTGCAT
AA
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