mRNA_C-linearis_contig8.15535.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15535.1
Unique NamemRNA_C-linearis_contig8.15535.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 6.800e-64
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDADAPMQAVEE 558
            MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGG DAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDA APMQAV E
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAGAPMQAVAE 108
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.650e-46
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGG---GPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQ 519
            MPATAGRVRMPH NRVSSSSALKMTGIWTNTIGYDPYAAEGG      A D  NA+EQAQGLMALAKLSN+GVTE RGACKKCG VGHLTFQCRNH+Q
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEGVTESRGACKKCGMVGHLTFQCRNHLQ 98
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 144 bits (363), Expect = 3.160e-38
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI----QPVDAD 534
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAEG     +   +++EQA+GLMALAKLSNQG  E RGACKKCG +GHLTFQCRN +    Q V AD
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQG-NEVRGACKKCGMLGHLTFQCRNFLDMGDQXVKAD 103
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.650e-36
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TIGYDPYAAEG     E    ++EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEG--EKKETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A3M6VM93_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM93_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.280e-36
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  223 DPLTMPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            DP  MPAT+GRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAE      E    ++EQA+GLM LAKLSN+G ++ RGACKKCG VGHLTFQCRNH+
Sbjct:   11 DPTQMPATSGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAED--EKKETTETSYEQAKGLMTLAKLSNKG-SDVRGACKKCGKVGHLTFQCRNHL 105
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.150e-34
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    ++EQA+GLMALAKLSN+  ++ RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGE-QQGETSETSYEQAKGLMALAKLSNKS-SDVRGACKKCGMVGHLTFQCRNHL 92
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.370e-34
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTIGYDPYAAE    +  D   +FEQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQETSD--TSFEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 91
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 139 bits (351), Expect = 1.410e-34
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    ++EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEGE-KQGETSETSYEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 92
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A833TGJ4_PHYIN (Zinc knuckle n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGJ4_PHYIN)

HSP 1 Score: 138 bits (348), Expect = 3.170e-34
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTIGYDPYAAEG     E    + EQA+GLMALAKLSN+   + RGACKKCG VGHLTFQCRNH+
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGE-QQGETNETSLEQAKGLMALAKLSNKS-NDVRGACKKCGMVGHLTFQCRNHL 92
[Close]
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 6.460e-34
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:  235 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEANAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHI 516
            MPA+AGRVRMPH NR+ SS+ALKMTGIWTNTIGYDPYAAEG     E   +++EQAQGLMALAKLSN+   + RGACKKCG +GHLTFQCRN +
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAEGE-EKKEVSQSSYEQAQGLMALAKLSNKS-NDVRGACKKCGMLGHLTFQCRNFL 92
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI6.800e-6497.22CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA1.650e-4684.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN3.160e-3870.19Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2P4YHG3_9STRA4.650e-3672.34Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A3M6VM93_9STRA6.280e-3670.41CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A329RX20_9STRA1.150e-3472.34Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3SK00_9STRA1.370e-3473.40Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8C9S2_PHYNI1.410e-3472.34CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]
A0A833TGJ4_PHYIN3.170e-3472.34Zinc knuckle n=1 Tax=Phytophthora infestans TaxID=... [more]
A0A8K1FHX2_PYTOL6.460e-3472.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1126555..1131814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue7.1e-54
Seed eggNOG ortholog2880.D8LC93
Preferred nameSREK1IP1
KEGG koko:K11493
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2985@1,KOG2985@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons7
Model size1401
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.9625094-UTR-C-linearis_contig8:1126554..11267881622930521.9625094-UTR-C-linearis_contig8:1126554..1126788Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1126555..1126788 +
1690881112.6130106-UTR-C-linearis_contig8:1126554..11267881690881112.6130106-UTR-C-linearis_contig8:1126554..1126788Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1126555..1126788 +
1622930522.1134872-UTR-C-linearis_contig8:1131463..11318141622930522.1134872-UTR-C-linearis_contig8:1131463..1131814Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1131464..1131814 +
1690881112.7032857-UTR-C-linearis_contig8:1131463..11318141690881112.7032857-UTR-C-linearis_contig8:1131463..1131814Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1131464..1131814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.9783115-CDS-C-linearis_contig8:1126788..11269951622930521.9783115-CDS-C-linearis_contig8:1126788..1126995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1126789..1126995 +
1690881112.626046-CDS-C-linearis_contig8:1126788..11269951690881112.626046-CDS-C-linearis_contig8:1126788..1126995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1126789..1126995 +
1622930521.9997938-CDS-C-linearis_contig8:1127966..11279961622930521.9997938-CDS-C-linearis_contig8:1127966..1127996Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1127967..1127996 +
1690881112.6370516-CDS-C-linearis_contig8:1127966..11279961690881112.6370516-CDS-C-linearis_contig8:1127966..1127996Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1127967..1127996 +
1622930522.0184689-CDS-C-linearis_contig8:1128378..11284531622930522.0184689-CDS-C-linearis_contig8:1128378..1128453Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1128379..1128453 +
1690881112.6473112-CDS-C-linearis_contig8:1128378..11284531690881112.6473112-CDS-C-linearis_contig8:1128378..1128453Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1128379..1128453 +
1622930522.041232-CDS-C-linearis_contig8:1129094..11291691622930522.041232-CDS-C-linearis_contig8:1129094..1129169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1129095..1129169 +
1690881112.6575048-CDS-C-linearis_contig8:1129094..11291691690881112.6575048-CDS-C-linearis_contig8:1129094..1129169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1129095..1129169 +
1622930522.05837-CDS-C-linearis_contig8:1129750..11299741622930522.05837-CDS-C-linearis_contig8:1129750..1129974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1129751..1129974 +
1690881112.6678746-CDS-C-linearis_contig8:1129750..11299741690881112.6678746-CDS-C-linearis_contig8:1129750..1129974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1129751..1129974 +
1622930522.0802433-CDS-C-linearis_contig8:1130620..11307371622930522.0802433-CDS-C-linearis_contig8:1130620..1130737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1130621..1130737 +
1690881112.6784704-CDS-C-linearis_contig8:1130620..11307371690881112.6784704-CDS-C-linearis_contig8:1130620..1130737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1130621..1130737 +
1622930522.0987513-CDS-C-linearis_contig8:1131375..11314631622930522.0987513-CDS-C-linearis_contig8:1131375..1131463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1131376..1131463 +
1690881112.6889465-CDS-C-linearis_contig8:1131375..11314631690881112.6889465-CDS-C-linearis_contig8:1131375..1131463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1131376..1131463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15535.1prot_C-linearis_contig8.15535.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1126789..1131463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15535.1

>prot_C-linearis_contig8.15535.1 ID=prot_C-linearis_contig8.15535.1|Name=mRNA_C-linearis_contig8.15535.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGPDAEDEA
NAFEQAQGLMALAKLSNQGVTEQRGACKKCGSVGHLTFQCRNHIQPVDAD
APMQAVEEESESDSDDISVSSVSDSSDEEDTRRRNGGGGGSGSTSKSGKG
KEKKSSRTSSSHRDRDRDRDGGSSKRKRRREVDSSDDDSDDSDSGSGGRR
KGSGSSSKKRRSRSGDDGKDKDRTKDKSERRERKERKRKDREREKSRKST
SKKSKKDKREKKSKHSKHKRR*
back to top

mRNA from alignment at C-linearis_contig8:1126555..1131814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15535.1 ID=mRNA_C-linearis_contig8.15535.1|Name=mRNA_C-linearis_contig8.15535.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5260bp|location=Sequence derived from alignment at C-linearis_contig8:1126555..1131814+ (Chordaria linearis ClinC8C monoicous)
CGACGACTATACACCAGACACAGCGACAACAACAACAGTGAACAGGCAAG
GCGCATCTTCCCCTTAGGAGTGGTGGCTAGGTCACCGACCTGTGAAGGAA
AGAAACGGCTAAATACCGTTGTTTTTGAGGATCGAAGCAGCTTGCTCGGC
CGCGGGGCGAACACCCCCTAGCAGAAGCACCTTGGGGAGAGCACAACAGC
GGTAGTAGCGAGCGACCCACTCGACCCACTTACCATGCCGGCCACCGCGG
GGAGAGTGCGCATGCCGCACGGCAATCGCGTCAGTAGTAGCTCCGCCCTG
AAGATGACCGGCATCTGGACCAACACGATCGGGTACGACCCCTACGCCGC
AGAGGGCGGAGGTCCTGATGCCGAGGACGAGGCCAACGCCTTCGAGCAGG
CGCAGGGGCTCATGGCGCTGGCGAAGCTTTCGAACCAGGGGGTAAGTTAC
TTATTTTGCAGGCGAAGGGCACAAGCTAGGGACAAATTGGGATGTGCGAG
CGTTACGACTGTTGCCTGCAGTTGTCTGTATCAGCAGCACTAGTCTACAC
ACCTTGGTGTTTGACCTTCTCTTGCCGTCACCGCGCGAGCAGCAGCACCT
TGGGGGTGCAACCATGTCCCTGGAATGGACGTGTGTCGCATTGCTCCAAG
TCGATCACTTTGCTGAACCATCCCAGGTTTTGCGTGTTTTGCTGAGGGGG
GGGGTCTGCGACACAGACGCCATTATACGGAATGCTGCTGAGGCGGCTTG
TCGCCATCTCTTTGGCAGCCACCACCCCACCTCTGTATCACCCATCGCTC
CCCAGACTCCCCCCAAGCAATTCCCTCTATTCGCGAAGAAATTACTGCTG
TACATCTGTGATTTAGTGATTTAGAGTTTAGAGTACAGGGGGCTCCGTAA
CCCTAACCCCAACCCCAACCACCGACCCCCCCAGTTAGCCGATTCCATAC
TTCATCCCATATGTTTTCTTATCTACAAACCTGCGTAGCTGCCGCTATCA
AAGACCTGGATAGTTTTAGGTATGGTAGTTAAGCAGCTGGTATAGATGAG
GAGATCGGGTGCAAAATGTGATATGTAATAATTTTGAGAAATTGTGTTGG
TGATGACTGCTGTGAACGCACGCCATAAAGGTGGAGGCTAGGTGAGAGAC
CCACCCTCTTTGCACAACTCTGGTTGGGTTTACAAAATCATTCGATTCAA
CCAGCTCATGGATACGCATGTGATGACCGATCGTGACGTGTACCCACGAC
GTTACCTTTCAGGGTTTTTCGAGTGATACTAGGAAGTATGATATCTCGTG
TACGTATGTGTCGATTCGATGCCTAACCTTAACCTTGTCTTCGATCGGTT
CGGCGTTGCTGTCTCCGCCTCTTGCTTGCCTTTGATCCAACACGACACAC
TGCTGTTTGCAGGTCACGGAGCAGCGAGGAGCTTGCAAGAAGGTAGGTTG
AGTCTTGTTTGCTTTCCCGCTGAATTGGTTACCAAACCCGCGAGTACGGT
CGCTGTGAGCACACCCGATTACCTACATAGATCACTGTTTCTGCGAGAAT
GATCACGGATGCTCATCGGGGAGGATTCAAGCGAGGTTCTGGGAGGAAGC
TAATCCCTTGAAGTGCAACACCCGGCACCTCAACAGTATTCACGATGTAG
CGCTCGTCGATGTCGACGTACCCCCCCGTCTTTCGTCGCGTGACCTGCGA
ACACTCTCGCGCGTGGCCTCCTATCGCCTCTCACGTAACTCTCCCGTTCT
CCTTGCCATCTTGCTCCCCTCCCGGCCTCTACTTCTCCATCGCGCCCCCT
CCCTTTCATACGATTTGCCCTCAGTGTGGATCGGTAGGCCACCTGACCTT
CCAGTGCAGGAACCACATCCAGCCCGTCGACGCTGACGCGCCCATGCAGG
TATGTACTTCGAGTATTGCCAATCCCCCGATGGATATAACTATTTGATAA
AGGGCAAGAGCGCAGAGCGTGCTATTGTTTTGAAAGCAGTCGGGTGCTTG
GTAGGTAGTGGTCTTGTGTGCAGATTCCTTGGAGTGTGCACAGACCTCAC
GTAAACCATGAGCATAGCGCGGGTAGGATCTGCAGAAGAGGCGACAGAAC
GGCCGATCTGATGTGTGACAGTTCGCGAAAGGCTGGGTTGTTCATTTCGA
CTCTGTACATCTGAGGGAGAGTCATCGAGAAGAAGAAAGCACGGCGTAAT
AGAAGAGGCAACAGCAAAAGCTTTGCAAGAGCTCTCGAACGCTCATTGGG
TTTACGGCTCACGATGAAATACACAGTTTACCCAAACAATGAAGTAGATG
GCTGCTGTAGCGGCTGCTGCCGTGTAGTTTTGTATAAATGCCGTGTGCCT
TGATCACGAACAGCGGGGTGCTGCAACCGCCAAAGCGGGTCTACAGAGAG
TTGACTCGCTTTGGCACTCGACCCAAAAAGTATGACATGTGCGATGGTGT
GCTTTTCTGTCGTCTCCGCTGTCGTAAACTCTCGGCGTATTCATGTCCTT
TTTTGTGTACGTTGCATCTATCCCTGTGCTTCGTCGCCAGGCGGTAGAGG
AGGAGTCTGAGTCTGACTCGGACGACATCAGCGTCTCTTCGGTGTCCGAC
AGCAGCGACGAGGAGGTAAGAGTGGCGTGCTGACCTCTGTGGCGCCGATC
CGGTGCAATTCGCCACGTCTGATACCGCCGCTATTGTGAAGGATGCCATG
AACGAACGTGTCCTTCCTCGGTCGATTCAAGTTGCAGCGACGAATGCAGC
GAACCTTTGCGATGTCCCCCTAAACCACCACGCCGGTACGAAGTTTCATC
TTGGTTTAGGTAAGGAGGTTTGCGCGCAACGTCTCTTTGTTCTTCATCCC
GCCACCCGCGGCACTACCTCCACTCAAATTTGTTCCTGTGCTTGCTGCGT
TCTCTTCCCGCCTTTTGATGCTCGATGGTATGTGTTCATGTTCGTATGTG
TTCATATGCTCCCCCGCCCTTTTGTTTAAGTCCGCTACGACGGGAGTTCA
ATATCCAGTTCATGGCAAATCTAAAACGCACACATACGCGCCCACACCTC
TTTGCCTGTACCAGAGTGTGCGGATGAAGGCATCGAGTATGACGCTGCAC
CCATCAAGGCGAGCAAGCGAGCGTAACAACGCTTTCCGCTCACCACGCAC
TCACACCTCTACCTTGTGCTTCCTTTCTTTTTTCTGCTTTGGACAGGATA
CGCGGCGCCGCAACGGCGGTGGCGGCGGAAGCGGCTCGACGAGCAAGAGT
GGCAAGGGAAAGGAGAAAAAGAGCAGCCGAACGTCTTCCTCCCACAGAGA
CAGAGACAGGGATAGGGATGGGGGGAGCAGCAAGAGAAAGAGGCGGAGGG
AGGTTGACAGCAGCGACGACGACAGCGATGACAGCGACAGTGGCAGCGGC
GGCCGTCGCAAGGGTTCAGGGTAAGCTTTTCCACGCTCTTCCAATCCCAA
CGCAACCATGTAGTGTGTGGCTGCTGTGTGTTTTGAGGAGCTGGGGTGAG
CGGCACCGTCTTGCGCCCTGACAGCATCCGCCCTCGTTTCGTTCAACGAG
CTGTCTCTAGACAGGTATCTCGTACCCTCCGCGGTATACTTCGAAGTAGA
TTGTTGGTGTGTCGAGAGGGCTTTGTTCGTCCAGCCGGCCACCACCTCCC
CTTGGCGTGAGCACTCTTGGCGAGGTGGATGGGTCTTTATCCACCACCTT
CATCCATTAACCTATCTAGGCGTTTTCGTACCGCTCAACCGTTCAATTGG
TATGCACATAGGTTGCGTATCTGTCGTGTGTTGCCTCCTGCGGCCTGTTG
CTGTCTAACCTCCTGAGTAACAAAGATTCCCCAGGTTATATTTAAGCGTG
CCGACGTATTTGGCCCGTTCATCATCACCCTCCGTACTTTTGCTCACTCG
ACACGCCTGAGGCATCACACCACCACGCACAGGCTAATTTATGTGCCACA
CGCAAGGCCCTTTTGTAGCTTCGAAACCTGTTGCTCTCATCGTGCACACG
GCCTGGCCCCACTGGCTCATGTGTGTCACCAAAACGCGCCCGCCTGGACA
TCCCTACACTAAATAGGAGCTCGAGCAAAAAGCGGCGATCGCGCAGCGGA
GACGATGGGAAGGACAAGGATAGAACCAAAGATAAATCGGAGCGGCGGGA
GCGCAAGGAAAGGAAACGGAAGGACCGGGAAAGGTAGGATTTGTTTTTTT
GTAGCTTTGCCTTTTCATGGGTACAGCGTTCTTCCGACTTGTTCTCTTAC
TTGTCCCCCATACTCCCTCTGTCTGCGTCTCTCCCAAGCATTTGTGTACT
TCGTATAACAAGCACAAGACGTTTTTACTCTCCGTGATTATTTTGCAACA
GCGTGCGCTTGGCGTCGCTCGGTGTCGTAAGTGTTTAGAATATTAGCGGG
AGATACACAGAGAAGGAAGTACTGGTAGTTTTTTTTAAGTTCGCTCGGGT
TTTGTTCACGGTACCGTCTGAAGAGACACTACACGGCACGCTTTTGAGTT
TCGTGAGGACGTCCTTCATGAGCCGTCGAAAACTTGGCACTCCGGGAACC
ACAGAGAGAGGGAGGACGGGAGGTCACGAACCGAATATAGCCCTCATCGG
GCATCACAAGTTCCCCCAACATTTCCGCCGATTTGGGGACGGGGCTAGAA
AGCCAACGCAGGTTAGGTGGTGGTGAGGGCCTGAGTAAGGTCGGTGCCAC
CCGGCGCATATCCCCGAAGAAGCACGATCCCGGACGCAAACCTCTTTTTT
TCAACCACTTTTTGTTTGGCTGGTTGTCCTCCCGTTCTCGTTGTTTCGTC
CGTTTTTACTCGTTTTGCCAGGGAGAAATCGCGAAAATCTACTTCAAAGA
AGTCTAAAAAGGACAAGCGCGAGAAGAAGAGCAAGCACAGTAAGCACAAG
AGGAGGTGATGGATCAACCTGCCTGCCAACAATGGCGGCCGGCGTAACTG
GAAATGCACATGCATGGAGAAAGGAGGGGGGGGGGGGCGTGCGTGCTATC
GTGCGTTGCAGCTCAGTTTGGTTCTGAGCCGACCAAAAAAGCGAGGCTCC
CAAACGCACAAGAAAGGGTGGCGTAAGGCGAAGAGGTGTATGGAGAGGGT
ATGTAGACGGCGGGAGATTATTGCGCCCCCTTTGTCGCTGTCTTGAGGTG
ATCGGCGAGTGTAATTCGATGATACCCGGTACTCTTTAGCCTTTCGCGGG
GCTATCCTCTACTCCAACAAAACCCACTCGCCAGCTCATGTTGCCCCGGT
AGTCTCTCGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:1126555..1131814+

>mRNA_C-linearis_contig8.15535.1 ID=mRNA_C-linearis_contig8.15535.1|Name=mRNA_C-linearis_contig8.15535.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig8:1126555..1131814+ (Chordaria linearis ClinC8C monoicous)
ATGCCGGCCACCGCGGGGAGAGTGCGCATGCCGCACGGCAATCGCGTCAG
TAGTAGCTCCGCCCTGAAGATGACCGGCATCTGGACCAACACGATCGGGT
ACGACCCCTACGCCGCAGAGGGCGGAGGTCCTGATGCCGAGGACGAGGCC
AACGCCTTCGAGCAGGCGCAGGGGCTCATGGCGCTGGCGAAGCTTTCGAA
CCAGGGGATGCCGGCCACCGCGGGGAGAGTGCGCATGCCGCACGGCAATC
GCGTCAGTAGTAGCTCCGCCCTGAAGATGACCGGCATCTGGACCAACACG
ATCGGGTACGACCCCTACGCCGCAGAGGGCGGAGGTCCTGATGCCGAGGA
CGAGGCCAACGCCTTCGAGCAGGCGCAGGGGCTCATGGCGCTGGCGAAGC
TTTCGAACCAGGGGGTCACGGAGCAGCGAGGAGCTTGCAAGAAGGTCACG
GAGCAGCGAGGAGCTTGCAAGAAGTGTGGATCGGTAGGCCACCTGACCTT
CCAGTGCAGGAACCACATCCAGCCCGTCGACGCTGACGCGCCCATGCAGT
GTGGATCGGTAGGCCACCTGACCTTCCAGTGCAGGAACCACATCCAGCCC
GTCGACGCTGACGCGCCCATGCAGGCGGTAGAGGAGGAGTCTGAGTCTGA
CTCGGACGACATCAGCGTCTCTTCGGTGTCCGACAGCAGCGACGAGGAGG
CGGTAGAGGAGGAGTCTGAGTCTGACTCGGACGACATCAGCGTCTCTTCG
GTGTCCGACAGCAGCGACGAGGAGGATACGCGGCGCCGCAACGGCGGTGG
CGGCGGAAGCGGCTCGACGAGCAAGAGTGGCAAGGGAAAGGAGAAAAAGA
GCAGCCGAACGTCTTCCTCCCACAGAGACAGAGACAGGGATAGGGATGGG
GGGAGCAGCAAGAGAAAGAGGCGGAGGGAGGTTGACAGCAGCGACGACGA
CAGCGATGACAGCGACAGTGGCAGCGGCGGCCGTCGCAAGGGTTCAGGGA
TACGCGGCGCCGCAACGGCGGTGGCGGCGGAAGCGGCTCGACGAGCAAGA
GTGGCAAGGGAAAGGAGAAAAAGAGCAGCCGAACGTCTTCCTCCCACAGA
GACAGAGACAGGGATAGGGATGGGGGGAGCAGCAAGAGAAAGAGGCGGAG
GGAGGTTGACAGCAGCGACGACGACAGCGATGACAGCGACAGTGGCAGCG
GCGGCCGTCGCAAGGGTTCAGGGAGCTCGAGCAAAAAGCGGCGATCGCGC
AGCGGAGACGATGGGAAGGACAAGGATAGAACCAAAGATAAATCGGAGCG
GCGGGAGCGCAAGGAAAGGAAACGGAAGGACCGGGAAAGGAGCTCGAGCA
AAAAGCGGCGATCGCGCAGCGGAGACGATGGGAAGGACAAGGATAGAACC
AAAGATAAATCGGAGCGGCGGGAGCGCAAGGAAAGGAAACGGAAGGACCG
GGAAAGGGAGAAATCGCGAAAATCTACTTCAAAGAAGTCTAAAAAGGACA
AGCGCGAGAAGAAGAGCAAGCACAGTAAGCACAAGAGGAGGTGAGGAGAA
ATCGCGAAAATCTACTTCAAAGAAGTCTAAAAAGGACAAGCGCGAGAAGA
AGAGCAAGCACAGTAAGCACAAGAGGAGGTGA
back to top