mRNA_C-linearis_contig8.15512.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15512.1
Unique NamemRNA_C-linearis_contig8.15512.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.240e-23
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            SAHYL DIW+K FYETPVVQ DGCSWTREEYLQ R QL+DG  LAGDASFKYAKVI
Sbjct:  220 SAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVI 275
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            S  YL  +W+KWFY+T V++ DG   TRE+YLQ   QL+DG +LAGDASFKYAKVI
Sbjct:   60 SDQYLRAVWHKWFYDTVVIEADGVRMTREDYLQRVGQLVDGMVLAGDASFKYAKVI 115
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.420e-15
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREE------YLQLRDQLIDGRLLAGDASFKYAKVI 168
            SAHYL DIW+KWFYE P+V+    +W   +      YLQ R QL+DGRLLAGDASFKYAKVI
Sbjct:   13 SAHYLGDIWHKWFYEMPMVK----TWVTTDALGHVNYLQRRAQLVDGRLLAGDASFKYAKVI 70
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.790e-14
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            S HYL D+W  +F E PV++ +G  WTRE+YL    Q  DG +LAGDASFK+AK+I
Sbjct:  120 SDHYLRDVWRTYFSELPVLEVEGVKWTREDYLPRVHQRCDGTVLAGDASFKFAKII 175
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.570e-13
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            S HYL D+W  +F E PV++  G  WTRE+YL    Q  DG +LAGDASFK+AK+I
Sbjct:  151 SDHYLRDVWRTYFSELPVLEVKGVKWTREDYLHCVHQRWDGTVLAGDASFKFAKII 206
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5JXW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.510e-13
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            S HYL D+W  +F E PV+  +G  WTRE+YL    Q  DG +LAGDASFK+AK+I
Sbjct:  106 SDHYLRDVWRTYFSELPVLGVEGVKWTREDYLPRVHQRWDGTVLAGDASFKFAKII 161
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BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5L553_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L553_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.450e-12
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASFKYAKVI 168
            S HYL D+W  +F E PV++ +G  WT E+YL    Q  DG +LAGDASFK+AK+I
Sbjct:  144 SDHYLRDVWRTYFSELPVLEVEGVKWTWEDYLPRVHQRWDGTVLAGDASFKFAKII 199
[Close]
BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.680e-5
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 1 
Query:    1 SAHYLADIWNKWFYETPVVQ 60
            SAH+LADIWNKWFYETPVVQ
Sbjct:  356 SAHHLADIWNKWFYETPVVQ 375
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FIV2_ECTSI1.240e-2383.933'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI1.200e-1562.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE1.420e-1562.903'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KFP9_9PHAE5.790e-1455.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE68_9PHAE2.570e-1355.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXW9_9PHAE3.510e-1355.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L553_9PHAE2.450e-1253.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D4_9PHAE4.680e-595.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:925754..926094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons2
Model size170
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.1233063-CDS-C-linearis_contig8:925754..9258621622930518.1233063-CDS-C-linearis_contig8:925754..925862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 925755..925862 -
1690881110.5805986-CDS-C-linearis_contig8:925754..9258621690881110.5805986-CDS-C-linearis_contig8:925754..925862Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 925755..925862 -
1622930518.148223-CDS-C-linearis_contig8:926034..9260941622930518.148223-CDS-C-linearis_contig8:926034..926094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 926035..926094 -
1690881110.597924-CDS-C-linearis_contig8:926034..9260941690881110.597924-CDS-C-linearis_contig8:926034..926094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 926035..926094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15512.1prot_C-linearis_contig8.15512.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 925755..926094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15512.1

>prot_C-linearis_contig8.15512.1 ID=prot_C-linearis_contig8.15512.1|Name=mRNA_C-linearis_contig8.15512.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
SAHYLADIWNKWFYETPVVQDDGCSWTREEYLQLRDQLIDGRLLAGDASF
KYAKVI
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mRNA from alignment at C-linearis_contig8:925754..926094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15512.1 ID=mRNA_C-linearis_contig8.15512.1|Name=mRNA_C-linearis_contig8.15512.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=341bp|location=Sequence derived from alignment at C-linearis_contig8:925754..926094- (Chordaria linearis ClinC8C monoicous)
TCGGCTCACTACCTGGCAGATATCTGGAACAAGTGGTTCTACGAAACCCC
AGTTGTGCAGGTATGTACAAGTAGGACACGAAAGAGCGTGGTTGTTGAAG
CCACAACGTCTGACTGCCTCCTCCATCGCATAGACACATACCGCTACCGC
TTGCTCGTACTATGTGTAAAAATAGACCTTGACCCGGTGTGCTGCATTTG
TTCCCTTTCCACTGGACGATGAAAATGACCAGGACGACGGGTGCTCCTGG
ACACGTGAAGAGTATCTGCAGCTTCGAGATCAGCTGATAGATGGCCGTCT
GCTGGCGGGTGATGCTTCCTTCAAGTACGCCAAGGTCATCC
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Coding sequence (CDS) from alignment at C-linearis_contig8:925754..926094-

>mRNA_C-linearis_contig8.15512.1 ID=mRNA_C-linearis_contig8.15512.1|Name=mRNA_C-linearis_contig8.15512.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at C-linearis_contig8:925754..926094- (Chordaria linearis ClinC8C monoicous)
TCGGCTCACTACCTGGCAGATATCTGGAACAAGTGGTTCTACGAAACCCC
AGTTGTGCAGTCGGCTCACTACCTGGCAGATATCTGGAACAAGTGGTTCT
ACGAAACCCCAGTTGTGCAGGACGACGGGTGCTCCTGGACACGTGAAGAG
TATCTGCAGCTTCGAGATCAGCTGATAGATGGCCGTCTGCTGGCGGGTGA
TGCTTCCTTCAAGTACGCCAAGGTCATCGACGACGGGTGCTCCTGGACAC
GTGAAGAGTATCTGCAGCTTCGAGATCAGCTGATAGATGGCCGTCTGCTG
GCGGGTGATGCTTCCTTCAAGTACGCCAAGGTCATC
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