mRNA_C-linearis_contig79.15418.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: D8LJE5_ECTSI (Putative ubiquitously-expressed transcript variant 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE5_ECTSI) HSP 1 Score: 186 bits (473), Expect = 9.150e-54 Identity = 96/117 (82.05%), Postives = 103/117 (88.03%), Query Frame = 2
Query: 590 RIAKIKHEMGQYAELKGKLSSIMVREEEGPLEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNLA*FVS 940
R+AK++HEMGQYAELK KLS IMVREE+GPLEMLTDLGADCFAKVKV DPS+VFV VALGFHVEFTLPEAISFADVKR+SL A +KLRD EAEV RDI SAESMIRDLR L VS
Sbjct: 33 RVAKVEHEMGQYAELKEKLSGIMVREEDGPLEMLTDLGADCFAKVKVQDPSKVFVKVALGFHVEFTLPEAISFADVKRSSLASAAAKLRDSEAEVARDIASAESMIRDLRALGEAVS 149
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: L8H843_ACACA (Prefoldin, alpha subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H843_ACACA) HSP 1 Score: 71.2 bits (173), Expect = 4.310e-11 Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGPLEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNLA 928
K+ ++ Y LK L +I E + + L +LG++ + + KV D S+VFV V LGFHVEFT EA+SF ++K A LTG +++L + + I + + I +L LA
Sbjct: 34 KLLRQIADYMTLKNNLLAIEKNELKA-FKTLVNLGSEFYIQAKVPDASKVFVNVGLGFHVEFTPKEALSFIELKEAHLTGRVNELAETANSIKSRIRTMYTGIAELMKLA 142
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A388K4G4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K4G4_CHABU) HSP 1 Score: 70.9 bits (172), Expect = 1.660e-10 Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGPLEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNL 925
KI E+ Y +L+ + + V + + + +LG++ +A+ ++DD S +FV + LGFHVEFTL EA++F D+K+ SLT + + A++ I IR+L L
Sbjct: 73 KINEELKSYRDLEKSIRLLQVNDLTS-MRSMVNLGSEVYAQAQIDDTSHLFVDIGLGFHVEFTLQEALNFIDLKQKSLTAKVDAYTSQIADIKSQIKLFCEGIRELMRL 180
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A0L0SIY8_ALLM3 (Prefoldin, alpha subunit n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SIY8_ALLM3) HSP 1 Score: 63.2 bits (152), Expect = 2.210e-8 Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGPLEMLT--DLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASL 832
++ +++ +Y +L ++ + +E G E+ T DLG++ F + K+ D + ++V VA GFHV+FTLPEAI+FAD K+ L
Sbjct: 32 QVYNQISEYGKLANQIKML---QETGSKELKTQVDLGSNFFVQAKIPDTTYIYVQVAFGFHVQFTLPEAIAFADKKQLQL 108
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A0S7LD52_9TELE (UXT (Fragment) n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7LD52_9TELE) HSP 1 Score: 62.8 bits (151), Expect = 2.500e-8 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGP--LEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNL 925
++ +M Y +LK + ++ EE GP L+ DLG F + +VD+PSR+ VLV GF VE + EA+ F D K LT + +L A++ I +R+L+ L
Sbjct: 8 RLYEKMSHYLQLKNAIQTL---EEAGPQRLKADVDLGCSFFVQARVDNPSRILVLVGFGFFVEMSHQEALRFIDKKTNQLTLFIEQLTKDVAKIKAHIRMVLEGLRELQGL 115
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A3B5MRG0_9TELE (Ubiquitously expressed prefoldin like chaperone n=8 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5MRG0_9TELE) HSP 1 Score: 63.2 bits (152), Expect = 3.730e-8 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGP--LEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNL 925
++ +M Y +LK + S+ EE GP L+ DLG F + +VD+PSR+ VLV GF VE + EA+ F D K LT +L A++ I +R+L+ L
Sbjct: 40 RLYEKMSHYLQLKNAIQSL---EEAGPQRLKADVDLGCSFFVQARVDNPSRILVLVGFGFFVEMSHQEALRFIDKKTNQLTLFTEQLTKDAAKIKAHIRMVLEGLRELQGL 147
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A0S7LD04_9TELE (UXT (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LD04_9TELE) HSP 1 Score: 61.2 bits (147), Expect = 6.980e-8 Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGP--LEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRNLA*FVSTW 946
++ +M Y +LK + ++ EE GP L+ DLG F + +VD+PSR+ VLV GF VE + EA+ F D K LT + +L T+D+ ++ IR + ++ W
Sbjct: 8 RLYEKMSHYLQLKNAIQTL---EEAGPQRLKADVDLGCSFFVQARVDNPSRILVLVGFGFFVEMSHQEALRFIDKKTNQLTLFIEQL-------TKDVAKIKAHIRMVLEVSSSARNW 115
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A0L0TD50_ALLM3 (Prefoldin, alpha subunit n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TD50_ALLM3) HSP 1 Score: 61.2 bits (147), Expect = 1.040e-7 Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 2
Query: 572 IRSDPIRIAKIKHEMGQYAELKGKL-SSIMVREEEGPLEMLT--DLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASL 832
+R D ++ ++ ++ GKL + I + +E G E+ T DLG++ F + K+ D + ++V VA GFHV+FTLPEAI+FA+ K+ L
Sbjct: 19 LRPDLDQVLGLRDQVYSQISDYGKLVNQIKLLQETGAKELKTQVDLGSNFFVQAKIPDTTYIYVQVAFGFHVQFTLPEAIAFAEKKQKQL 108
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: A0A8J4YHQ2_CHIOP (Protein UXT n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4YHQ2_CHIOP) HSP 1 Score: 60.5 bits (145), Expect = 2.250e-7 Identity = 31/108 (28.70%), Postives = 59/108 (54.63%), Query Frame = 2
Query: 599 KIKHEMGQYAELKGKLSSIMVREEEGPLEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASLTGALSKLRDREAEVTRDIVSAESMIRDLRN 922
K+ ++ +++LK + I+ ++ L DL ++ + + +V D S ++V + LG+HVEFTL EA+++ D K L LS+ + A++ I IR+L+
Sbjct: 31 KLYEDIATHSQLKQTIHCIIESPDQDGLRTQVDLCSNFYVQAQVPDTSHIYVNIGLGYHVEFTLQEALTYIDKKLKFLNSKLSESTKKSAKIKGHIKFVYEGIRELQQ 138
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Match: D8LZK2_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LZK2_BLAHO) HSP 1 Score: 58.2 bits (139), Expect = 3.690e-7 Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2
Query: 656 MVREEEGPLEMLTDLGADCFAKVKVDDPSRVFVLVALGFHVEFTLPEAISFADVKRASL-TGALSKLRDREAE 871
M +E + + L ++G++ + + K +D S +FV + +GFHVEFTL EA+ F D K A L T + K D E E
Sbjct: 1 MKKETKSTMRSLVNIGSEVYVQAKAEDRSHIFVNIGMGFHVEFTLDEALDFIDKKLAKLKTDVVLKNADVERE 73 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15418.1 >prot_C-linearis_contig79.15418.1 ID=prot_C-linearis_contig79.15418.1|Name=mRNA_C-linearis_contig79.15418.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp MRSNRAIVLSKPLKIDPCGRGLHLQQSRPTNPPFSLLSPLSVGVLYEYREback to top mRNA from alignment at C-linearis_contig79:491115..493203+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15418.1 ID=mRNA_C-linearis_contig79.15418.1|Name=mRNA_C-linearis_contig79.15418.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2089bp|location=Sequence derived from alignment at C-linearis_contig79:491115..493203+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:491115..493203+ >mRNA_C-linearis_contig79.15418.1 ID=mRNA_C-linearis_contig79.15418.1|Name=mRNA_C-linearis_contig79.15418.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig79:491115..493203+ (Chordaria linearis ClinC8C monoicous)back to top |