mRNA_C-linearis_contig79.15388.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15388.1
Unique NamemRNA_C-linearis_contig79.15388.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:115153..116919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDomain of unknown function DUF1713, mitochondria
Ec32 orthologEc-05_002590.1
Exons2
Model size1125
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15388.1prot_C-linearis_contig79.15388.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 115158..116384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930490.4579625-UTR-C-linearis_contig79:115152..1151571622930490.4579625-UTR-C-linearis_contig79:115152..115157Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 115153..115157 +
1690881096.5660627-UTR-C-linearis_contig79:115152..1151571690881096.5660627-UTR-C-linearis_contig79:115152..115157Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 115153..115157 +
1622930490.5264306-UTR-C-linearis_contig79:116384..1169191622930490.5264306-UTR-C-linearis_contig79:116384..116919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 116385..116919 +
1690881096.6144276-UTR-C-linearis_contig79:116384..1169191690881096.6144276-UTR-C-linearis_contig79:116384..116919Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 116385..116919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930490.4746356-CDS-C-linearis_contig79:115157..1154791622930490.4746356-CDS-C-linearis_contig79:115157..115479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 115158..115479 +
1690881096.5772305-CDS-C-linearis_contig79:115157..1154791690881096.5772305-CDS-C-linearis_contig79:115157..115479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 115158..115479 +
1622930490.488866-CDS-C-linearis_contig79:116121..1163841622930490.488866-CDS-C-linearis_contig79:116121..116384Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 116122..116384 +
1690881096.5968688-CDS-C-linearis_contig79:116121..1163841690881096.5968688-CDS-C-linearis_contig79:116121..116384Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 116122..116384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15388.1

>prot_C-linearis_contig79.15388.1 ID=prot_C-linearis_contig79.15388.1|Name=mRNA_C-linearis_contig79.15388.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=195bp
MLSLLGREGRRLPAVRYLLRPSIDSVLVVPQVPSQSRLLGTSDLCIYGCD
EPSRRDVHRSAEGGAGAKGVMHSLPIACTVWEACRLASKMGKGGASAFSL
KIAENLQGVRQAATDLLSPWASPVALGFGQPTLLPQSLELDQGYEEGGEK
MGGLFEGGLWATSVRRKRVTKMRKHKWRKRRKLERQSASRRVGK*
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mRNA from alignment at C-linearis_contig79:115153..116919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15388.1 ID=mRNA_C-linearis_contig79.15388.1|Name=mRNA_C-linearis_contig79.15388.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1767bp|location=Sequence derived from alignment at C-linearis_contig79:115153..116919+ (Chordaria linearis ClinC8C monoicous)
GCGCAATGCTCTCGTTGCTTGGACGGGAAGGCCGGCGTTTGCCGGCTGTC
CGTTACTTGTTACGCCCTTCGATCGACTCGGTCTTAGTGGTCCCTCAAGT
GCCAAGCCAGTCGCGACTTTTAGGCACGTCAGACCTCTGCATTTATGGCT
GTGACGAGCCTTCTAGACGAGATGTTCATCGTTCGGCCGAAGGAGGAGCA
GGAGCGAAGGGTGTGATGCATTCCCTGCCGATAGCATGCACCGTTTGGGA
GGCTTGTAGATTGGCAAGCAAGATGGGGAAGGGGGGAGCTTCTGCTTTCT
CGCTGAAAATTGCTGAGAATTTGCAAGGTGCGTCCAGGTGGAGTACGGTG
TGTGTGAGTGAGTGTGTGTGTGCCTGTACAACGGTAGCGACACAGCTTGA
TGCAGCTGTGCAACGTACTTATTAGCTGGGGCACGGGCTGCCCATCACCT
TCTCAAGTGCTGTGTGTTGTGGCGTTTTATTTGAATGGGTAACAATACTG
AAGCCCAGACAGAGATTTCGCCGATGTTCTCCCTGTCTGTACGCACGTGC
TGTACAAGCACACGACGCGGCTATCATAACGTACAAATAATCTCGAGGCG
GGGGTCGGTAGCTACAGAGTAGCTGGTGCCTCGATTGCTGTACACGGCCG
TAGTTGAGGCACTGCCTGCTGATAAATAGTGCGGTGTGTGGCAAGTATAT
AGCGCGACGCTCAAGTCCACCTTCGCAGTCATCTCCTCATGCAGACGGTC
GGTTGCCTATGTGCTAGGCCTGTGAACGGCAGCAATAGACAACATTGAAT
ATGGTGCGACACTGCGACAAACGCCGGGTTCTGTTCTCAGGATGGAATTC
AGCACTCATGTGTTTCACGCGGAGCGCGCGATGCTGCTATCGCACGTTCA
CACCCTTGTTTTGCGATTTCAACCGTGACATCCTTCCACCCTTAAAACGT
CTTTGACTGCGCTGTGCAGGTGTCAGGCAGGCCGCGACAGATCTGTTGAG
CCCTTGGGCTTCCCCGGTAGCCCTGGGATTTGGTCAACCGACGCTATTGC
CACAGTCGCTGGAACTCGACCAGGGATACGAGGAGGGGGGAGAGAAAATG
GGGGGTTTGTTCGAAGGGGGCTTGTGGGCGACTAGCGTGAGGCGGAAGCG
CGTGACCAAGATGAGGAAGCACAAGTGGAGGAAGAGGAGGAAGCTCGAGC
GCCAGTCGGCCTCTCGGAGAGTTGGCAAGTAGGCTAGTTCTGCGAAGTGC
CAGCAGCTTTGGGCGTTATTTGCGTTGGATCAGTGATTTGAGATTGCTGG
TCTTGATTAGTAAAGTTGACGCACGTGCAGGCAGAGCCAATGTTTTGGCA
AACCAACCGTGCAACGGGCGTAGCGAATGTAGACCGTTGTGCGTTTTGCG
CCCAGTTCTCGAACAGAGTGCAACGCACGAAGTCAGATTAGTATCTTGCG
CATTTATCTTCCAGGGCTACGGCCGTCAGCTGCAGAGTCTGAATCAGTGT
TCCCTTGTAAAACCTGTTGATGTTGACAGAGTAGTGTCAAACCAAAAATG
TGCGACTTTCTTAGCGAACGGGCCTCGGGAGAGTGGGGACATGAACGGTG
TCAACGCTGGGGACACATCTCTACAGAGTAGTACGACAGAGCACCGTAAG
AATCGGAGTTTTCGAACCCCCATGACGATCGGTTTCAGGACCATGTCCTT
CTTGTCGTACTTGACTTTTCGAGTAGAGTGATATCATACGATGACCTCCT
TTGCGGCAACCCCAGCT
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Coding sequence (CDS) from alignment at C-linearis_contig79:115153..116919+

>mRNA_C-linearis_contig79.15388.1 ID=mRNA_C-linearis_contig79.15388.1|Name=mRNA_C-linearis_contig79.15388.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at C-linearis_contig79:115153..116919+ (Chordaria linearis ClinC8C monoicous)
ATGCTCTCGTTGCTTGGACGGGAAGGCCGGCGTTTGCCGGCTGTCCGTTA
CTTGTTACGCCCTTCGATCGACTCGGTCTTAGTGGTCCCTCAAGTGCCAA
GCCAGTCGCGACTTTTAGGCACGTCAGACCTCTGCATTTATGGCTGTGAC
GAGCCTTCTAGACGAGATGTTCATCGTTCGGCCGAAGGAGGAGCAGGAGC
GAAGGGTGTGATGCATTCCCTGCCGATAGCATGCACCGTTTGGGAGGCTT
GTAGATTGGCAAGCAAGATGGGGAAGGGGGGAGCTTCTGCTTTCTCGCTG
AAAATTGCTGAGAATTTGCAAGATGCTCTCGTTGCTTGGACGGGAAGGCC
GGCGTTTGCCGGCTGTCCGTTACTTGTTACGCCCTTCGATCGACTCGGTC
TTAGTGGTCCCTCAAGTGCCAAGCCAGTCGCGACTTTTAGGCACGTCAGA
CCTCTGCATTTATGGCTGTGACGAGCCTTCTAGACGAGATGTTCATCGTT
CGGCCGAAGGAGGAGCAGGAGCGAAGGGTGTGATGCATTCCCTGCCGATA
GCATGCACCGTTTGGGAGGCTTGTAGATTGGCAAGCAAGATGGGGAAGGG
GGGAGCTTCTGCTTTCTCGCTGAAAATTGCTGAGAATTTGCAAGGTGTCA
GGCAGGCCGCGACAGATCTGTTGAGCCCTTGGGCTTCCCCGGTAGCCCTG
GGATTTGGTCAACCGACGCTATTGCCACAGTCGCTGGAACTCGACCAGGG
ATACGAGGAGGGGGGAGAGAAAATGGGGGGTTTGTTCGAAGGGGGCTTGT
GGGCGACTAGCGTGAGGCGGAAGCGCGTGACCAAGATGAGGAAGCACAAG
TGGAGGAAGAGGAGGAAGCTCGAGCGCCAGTCGGCCTCTCGGAGAGTTGG
CAAGTAGGTGTCAGGCAGGCCGCGACAGATCTGTTGAGCCCTTGGGCTTC
CCCGGTAGCCCTGGGATTTGGTCAACCGACGCTATTGCCACAGTCGCTGG
AACTCGACCAGGGATACGAGGAGGGGGGAGAGAAAATGGGGGGTTTGTTC
GAAGGGGGCTTGTGGGCGACTAGCGTGAGGCGGAAGCGCGTGACCAAGAT
GAGGAAGCACAAGTGGAGGAAGAGGAGGAAGCTCGAGCGCCAGTCGGCCT
CTCGGAGAGTTGGCAAGTAG
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