mRNA_C-linearis_contig78.15372.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15372.1
Unique NamemRNA_C-linearis_contig78.15372.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:703731..707911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2053
Cds size1059
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15372.1prot_C-linearis_contig78.15372.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 704481..705539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.9685144-UTR-C-linearis_contig78:703730..7044801622930477.9685144-UTR-C-linearis_contig78:703730..704480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 703731..704480 -
1690881090.0219972-UTR-C-linearis_contig78:703730..7044801690881090.0219972-UTR-C-linearis_contig78:703730..704480Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 703731..704480 -
1622930477.9963725-UTR-C-linearis_contig78:705539..7055781622930477.9963725-UTR-C-linearis_contig78:705539..705578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 705540..705578 -
1690881090.051563-UTR-C-linearis_contig78:705539..7055781690881090.051563-UTR-C-linearis_contig78:705539..705578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 705540..705578 -
1622930478.0077593-UTR-C-linearis_contig78:707706..7079111622930478.0077593-UTR-C-linearis_contig78:707706..707911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 707707..707911 -
1690881090.0706263-UTR-C-linearis_contig78:707706..7079111690881090.0706263-UTR-C-linearis_contig78:707706..707911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 707707..707911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.9823165-CDS-C-linearis_contig78:704480..7055391622930477.9823165-CDS-C-linearis_contig78:704480..705539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 704481..705539 -
1690881090.0384433-CDS-C-linearis_contig78:704480..7055391690881090.0384433-CDS-C-linearis_contig78:704480..705539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 704481..705539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15372.1

>prot_C-linearis_contig78.15372.1 ID=prot_C-linearis_contig78.15372.1|Name=mRNA_C-linearis_contig78.15372.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=353bp
MGHAVRKNGNTPMAQLELVSLEFCDTVRARSSKRLKVERATPKYLWMDGE
MGPASLGSVATRVLACRPREVTWQLPARRLNHGVDVFATVEGFSFGDLSI
DKVDHVVWTRGLKRFFLGKRFNCSVDAVPFPASLQELHFGPYFNQPIRRT
NWPRSLQKLTFPTCSRPHGNYPHGFNQPVTEVVWPSSIEMISLGMNFNQP
IAAVLWPPSLQTIFFGGCFNQPIIGVEWPPSLRNLSFGWHFNQPIIGVAW
PASLRQLSFGEKFDQPVSGVAWPDSLTQLSFGQCFNQPMTGVVWSSSLRQ
LEFGADFWQVVVGIAWPASLKSLTVVRAGKKTACQPNATLPARVSLNNLR
SY*
back to top

mRNA from alignment at C-linearis_contig78:703731..707911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15372.1 ID=mRNA_C-linearis_contig78.15372.1|Name=mRNA_C-linearis_contig78.15372.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4181bp|location=Sequence derived from alignment at C-linearis_contig78:703731..707911- (Chordaria linearis ClinC8C monoicous)
GTGCCCTCCAGCTCTCCGCCCGACACCCTTTCTCGTAGACTCGTAGTCCT
CTTCCGGGTCACAGAGTTGCCAAAAGGGTTGCGTTGGGTCGGGTCGGTGT
GAGGTGGTTGGTGTGTGGACCGTTGGCGACACTTCCACGGTCTGCTAAGT
CAAGTGCGCCTGTGGCTCACGCACGTGGCGATGGCGCAGCAACCCCAACC
AGCAGGTGAGGGCAAGCCCACAGAACTTCTCGCGTGTGGACGTTTTTGTT
TCAGGGAACGCGAGTAGCGAGTGGGTCTACTGCTCGTCACCAAACGCCAG
GGACTAGCAACCTGCCGTGGGTGGTGGCTTTTTTCGCGCGTACCACTCTT
TGTACACTGACTTGTTGCAGAGGCCTCTCTCTGCTGTGCCGTAAACACCG
CCACCTTCCCCCACACCCCGTATGATGCACTGACAACCCCCACACACGTG
TACGGTCGACCGGTAAAGCTTTCCGTGCCTCCGTTTGTATATACACACCC
ACGCACGAATGAACTCACCCCCAACCACTAGCCACTAGCCATATATAAAA
CTTTTGAACCCCGTTTACCACGCAACCGCATTCCCACTCTAAAATCCACA
TCATTTGTCTCCGAAATCAACCCCATTTCCTCATATAAAATCCTCATCAT
CCGTCCCCGAAAATGACGCAAAGGGACTGTAAATAAGATCCAAATCAACG
TTCGTTGCAAATAAGCGATTGGCGACATACGCGGATGACGAATGCTGTAC
GTATGAGGAGAAAACCTGCGTGAGTAGAAAACCTGTTGGGAGTGCTGTCG
ACATGCAGAACACACACAGGGGTCAACACGATCGGTCTTTGCAAAAGTGG
CATCGGGTCGCGCACCGATCTGTTGTATCCTGATATACTATGCACTGCAT
GTTCTATTGCGATTTCGTAGTGCAGAACGGTACCGTTTTCGGTACCTGGA
CAACTCGTGTTGAAAGCGGTACTTTTGTTTTTGCGTTAGTGGCACTTGAA
GTTGAAACTCAACTTGAGTTACATCTGAGAGATGTGTTGTGTAGAACGTG
CTCACAACAGTCTAGCGTGCATGCTACGTACCTGGTACATAGAATGCGCA
ACGGTTCTTGGGATTTTTTCTGCTTTTTGATTGTTTTTTCTCCTAGGTAA
GTATAAGTTCCCCGGAACATTCCCGGCACAGTAAGACTTGGGCCTTAGCC
CCGTATCGACCATAAAAAAACGGCAGCGGGCAAATAGACTTTTTTGTTTT
TGGAACAAGGGGAGCACACAGATACATAATTGACTTGATTTTAGACAAGA
ATCTGCCAACACGCAAAGCTCGCCACTGGCGGAAACATGGCTCTTCCTAC
GCTACAGAACCTGTCTACAGGACACAGCAACAATTCACGCTGTTCACAAT
TTTGATCCGCACTCTGAACGGCAAGAAATGTTGAAATTAGTGCATTTCCG
GACATTCTCGGGCTGTGGCTGCAAATTTGCTACGTCATCTCAAAAATCTG
TACAGCGTGATTTGTAGCCTTGTTCGATGCGCAGACAACACAAAGAACCG
CTTATCAATCCAACACGCCAACGTAGAGCAGTCCGTGACCGGGAATTGTC
GCTTTGCTACGCAAAAACGGTGGTCGGGGAGTTTTTTTTACTTCGCGTAT
GAGCGAAGGAAAAAAACCGACACCGCTCGTTTGGCTCACACCTCCAGCCA
CCTCCCGGCCTCCCCAGGCGAAGCTAACCACAGGCAATGAGAGTGGTCCT
TAAGGTCCGTAGTTATGTCGTCGGTAGTGACCGACGGGAGCACCAAGACA
GACAGAGCGCGAAACCACCTACCGGGCTCACTCTGTCTTCTGCCCACAAC
CAGCAAAAATAACAAACCCTTGAACTCAAATTCTCAACTCTCGAAGATCA
ACACACAAGTCAGCCTTGCGGACTAACTTCTGCAGTCACATCTCCGTGAC
AGTGACACACGTTTTGGTTTCGTTCGTGCGCACATCTCTTTGATCAGCTG
CTGTTTCACAACTGCTGTCTGTTCTGTTTTTCAGTGTGAGAGAAGCACCC
AACTTTCATCATAAGTCAGCACGGACTCGTCTTCGACCACCGCGTCTCGA
CAGACCCTCAACCTCTGATATCATCTCAGATGCCCACAAACACGCACAAT
TAAGGTCAAGCCGGGGTATATGTTCGCTCCACAAATGTTGGTGTTTTGTT
CATAGAGCTCCCCACGGCGTTGCTGAGGAGAGTGCTCGCTAAATTACATG
TATCATCCTGCCGTAATCCTGCCCCTCTTGAGATGCTGTGAAACCTTGCG
GTCGCCCGTCTTGTCGTCTTCCTTACACCAAAGGTGCAAGCCGCTCCCTG
GATGCGTTCTTTGTCGTCATGAATGGGGCATGCCGTGAGAAAGAATGGTA
ATACGCCGATGGCGCAACTCGAGCTGGTGTCGTTGGAGTTCTGCGACACC
GTCCGAGCCAGGTCCTCCAAGCGCCTGAAAGTGGAGAGAGCGACACCAAA
GTATTTATGGATGGACGGAGAGATGGGACCCGCGTCGTTGGGGTCGGTCG
CGACGCGGGTGCTGGCCTGCCGACCTCGCGAGGTGACTTGGCAGCTGCCA
GCCAGGCGACTCAACCACGGCGTCGACGTGTTTGCGACCGTTGAGGGCTT
CAGCTTCGGCGATCTATCGATCGATAAGGTGGATCATGTGGTATGGACGC
GCGGGCTGAAACGATTTTTTCTTGGAAAGCGATTCAACTGTTCGGTGGAC
GCCGTACCGTTTCCAGCTTCGCTGCAGGAGCTGCACTTCGGACCATACTT
CAATCAGCCAATCAGGAGGACTAATTGGCCAAGATCATTGCAAAAATTGA
CTTTCCCTACATGTAGCCGTCCTCATGGTAATTATCCTCATGGTTTCAAC
CAGCCCGTCACCGAAGTTGTGTGGCCTTCATCGATTGAAATGATCTCGTT
GGGGATGAACTTCAACCAGCCTATCGCTGCAGTTTTGTGGCCACCGTCGT
TGCAAACGATTTTCTTCGGGGGCTGCTTCAATCAGCCCATCATCGGAGTT
GAGTGGCCGCCCTCTCTGCGCAACTTGTCGTTCGGGTGGCATTTCAACCA
GCCCATCATCGGAGTTGCGTGGCCAGCCTCCCTGCGGCAGCTGTCGTTCG
GCGAAAAATTCGACCAGCCTGTCAGTGGGGTTGCTTGGCCGGATTCCCTC
ACACAGCTGTCGTTCGGGCAGTGCTTTAACCAGCCCATGACCGGAGTTGT
GTGGTCCTCATCTCTGCGGCAGCTTGAGTTCGGGGCAGACTTTTGGCAGG
TTGTGGTCGGAATTGCGTGGCCGGCGTCCCTGAAGAGTCTCACTGTCGTC
CGGGCGGGGAAGAAGACCGCCTGCCAGCCAAATGCAACGCTGCCAGCTCG
GGTCAGCCTGAATAATTTGAGATCCTATTAGAGGCGGGATATTTGTTTCC
CAAGGGCCGATTACTGCAGTAGATGGAGCTGCCTGTGCTATCGAAACTTC
CCCGGCCTTTGTTTTTGGTCGTTAAATTTGTGTTTTGCCGCAAGCCTCAC
CTTAGGATAGGAACAACATTTACATTTTCGACCGTACCTTCAGGTTGGGA
GATGCTTTGTGCAAAATGTTGTCAAATTGCGAACAAGGCTGGGAGAGAGA
GAGTGGCGTGCATCGCGAGTTCTGGGGTGGTTGGAGTCGCGAGTTTTACG
GTAGGGGGCGAGCGTTTCTGCTGTCTCTGGCACCGTTTTCTTGAAGGGTC
TTGACGAATACTTTTATCTCGCAGCAAGCTGTCGGAGCGTGTTGTTTAAG
GCGTAGATTATGCTCTATGGTTGCTGTATCCAATTTTACAGTCTACGTGT
ACCTGTAACGGGTTGCAGTTTAACGTTTTGCTGGGTTGCAGGTTAACTTC
AAAATAAGAAATGTTGTCAGGACCCGTCACAAAGAGAGTGTCTCCGTACA
GCCGATTGGTCGACTTCGTGTTGGTACCTACCAGGACCGTGTGGTTTCAT
GGAACGGCGGTACTTTTGGTTCCTGAACGTTTCCGGGCCGGTCTTTTTGA
GTTATGTAGACGTGAACCAAGGGCTAGGCAGGGTGCACGCCCGCCTGCGG
GGCTCACTCCCCAACAATCCCTGTCCTAGGTTCAATAAGTTGAGAACAAC
TGGAAACAATTAAAAAATATCAAGGTTTTCA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig78:703731..707911-

>mRNA_C-linearis_contig78.15372.1 ID=mRNA_C-linearis_contig78.15372.1|Name=mRNA_C-linearis_contig78.15372.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2118bp|location=Sequence derived from alignment at C-linearis_contig78:703731..707911- (Chordaria linearis ClinC8C monoicous)
ATGGGGCATGCCGTGAGAAAGAATGGTAATACGCCGATGGCGCAACTCGA
GCTGGTGTCGTTGGAGTTCTGCGACACCGTCCGAGCCAGGTCCTCCAAGC
GCCTGAAAGTGGAGAGAGCGACACCAAAGTATTTATGGATGGACGGAGAG
ATGGGACCCGCGTCGTTGGGGTCGGTCGCGACGCGGGTGCTGGCCTGCCG
ACCTCGCGAGGTGACTTGGCAGCTGCCAGCCAGGCGACTCAACCACGGCG
TCGACGTGTTTGCGACCGTTGAGGGCTTCAGCTTCGGCGATCTATCGATC
GATAAGGTGGATCATGTGGTATGGACGCGCGGGCTGAAACGATTTTTTCT
TGGAAAGCGATTCAACTGTTCGGTGGACGCCGTACCGTTTCCAGCTTCGC
TGCAGGAGCTGCACTTCGGACCATACTTCAATCAGCCAATCAGGAGGACT
AATTGGCCAAGATCATTGCAAAAATTGACTTTCCCTACATGTAGCCGTCC
TCATGGTAATTATCCTCATGGTTTCAACCAGCCCGTCACCGAAGTTGTGT
GGCCTTCATCGATTGAAATGATCTCGTTGGGGATGAACTTCAACCAGCCT
ATCGCTGCAGTTTTGTGGCCACCGTCGTTGCAAACGATTTTCTTCGGGGG
CTGCTTCAATCAGCCCATCATCGGAGTTGAGTGGCCGCCCTCTCTGCGCA
ACTTGTCGTTCGGGTGGCATTTCAACCAGCCCATCATCGGAGTTGCGTGG
CCAGCCTCCCTGCGGCAGCTGTCGTTCGGCGAAAAATTCGACCAGCCTGT
CAGTGGGGTTGCTTGGCCGGATTCCCTCACACAGCTGTCGTTCGGGCAGT
GCTTTAACCAGCCCATGACCGGAGTTGTGTGGTCCTCATCTCTGCGGCAG
CTTGAGTTCGGGGCAGACTTTTGGCAGGTTGTGGTCGGAATTGCGTGGCC
GGCGTCCCTGAAGAGTCTCACTGTCGTCCGGGCGGGGAAGAAGACCGCCT
GCCAGCCAAATGCAACGCTGCCAGCTCGGGTCAGCCTGAATAATTTGAGA
TCCTATTAGATGGGGCATGCCGTGAGAAAGAATGGTAATACGCCGATGGC
GCAACTCGAGCTGGTGTCGTTGGAGTTCTGCGACACCGTCCGAGCCAGGT
CCTCCAAGCGCCTGAAAGTGGAGAGAGCGACACCAAAGTATTTATGGATG
GACGGAGAGATGGGACCCGCGTCGTTGGGGTCGGTCGCGACGCGGGTGCT
GGCCTGCCGACCTCGCGAGGTGACTTGGCAGCTGCCAGCCAGGCGACTCA
ACCACGGCGTCGACGTGTTTGCGACCGTTGAGGGCTTCAGCTTCGGCGAT
CTATCGATCGATAAGGTGGATCATGTGGTATGGACGCGCGGGCTGAAACG
ATTTTTTCTTGGAAAGCGATTCAACTGTTCGGTGGACGCCGTACCGTTTC
CAGCTTCGCTGCAGGAGCTGCACTTCGGACCATACTTCAATCAGCCAATC
AGGAGGACTAATTGGCCAAGATCATTGCAAAAATTGACTTTCCCTACATG
TAGCCGTCCTCATGGTAATTATCCTCATGGTTTCAACCAGCCCGTCACCG
AAGTTGTGTGGCCTTCATCGATTGAAATGATCTCGTTGGGGATGAACTTC
AACCAGCCTATCGCTGCAGTTTTGTGGCCACCGTCGTTGCAAACGATTTT
CTTCGGGGGCTGCTTCAATCAGCCCATCATCGGAGTTGAGTGGCCGCCCT
CTCTGCGCAACTTGTCGTTCGGGTGGCATTTCAACCAGCCCATCATCGGA
GTTGCGTGGCCAGCCTCCCTGCGGCAGCTGTCGTTCGGCGAAAAATTCGA
CCAGCCTGTCAGTGGGGTTGCTTGGCCGGATTCCCTCACACAGCTGTCGT
TCGGGCAGTGCTTTAACCAGCCCATGACCGGAGTTGTGTGGTCCTCATCT
CTGCGGCAGCTTGAGTTCGGGGCAGACTTTTGGCAGGTTGTGGTCGGAAT
TGCGTGGCCGGCGTCCCTGAAGAGTCTCACTGTCGTCCGGGCGGGGAAGA
AGACCGCCTGCCAGCCAAATGCAACGCTGCCAGCTCGGGTCAGCCTGAAT
AATTTGAGATCCTATTAG
back to top