mRNA_C-linearis_contig78.15370.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15370.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE) HSP 1 Score: 545 bits (1405), Expect = 2.990e-174 Identity = 276/354 (77.97%), Postives = 296/354 (83.62%), Query Frame = 1
Query: 1708 GDACFSHAALFQEMEATQDGGVSSLSMGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPENARYGKAREMVEKKLRISGESMCGTWRQDFRDNIMRYPYYGYLSVHGHECQIADRCSACNRSNRTSVIAFLSGAEYEPNRVWDGLRWVNHLPKHWDNPAAMATSKQATKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINGDDELEPENFRGEGA-QTSKKKKKRCLNFSENEFESLSSLLNKADDLNGVKWGGRVGVRGGHGKTLLQAGAASSILDWLSGEAPPEQYGELDLG-LEGAAGGAEGLGEDAREDTDNGDDEEEFHVGRGRRWRTVGSSGGRYG 2763
GDA FSHAA F EME ++DGGVSSLS+GTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPE+ARYGKA+EMVEKKLRISGES+CG+WRQDFRD IMRYP+YGY V G C++ DRCSACNRSNRTSVIAFLSG+EY+PNRVWDGLRW HLP+HWD+P A A +KQ KATH+LGDTCKHKSHLFHSLTHYKLYLVSKV+AKI GD LEPENFRGEG QTSKK+KKRCLNFSENEFESLS+LL KADDLNGVKWGGR GVRGGHGKT L+ GAASSILDWLSGEA QYG LDLG LEG D VGRGRRWRTVGSS GRYG
Sbjct: 630 GDAFFSHAAFFNEMEQSEDGGVSSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLNDRCSACNRSNRTSVIAFLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKEKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGGLDLGELEGQGPXXXXXXXXXXXXXXXXD------VGRGRRWRTVGSSSGRYG 977
BLAST of mRNA_C-linearis_contig78.15370.1 vs. uniprot
Match: D7G8T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T8_ECTSI) HSP 1 Score: 304 bits (779), Expect = 3.260e-92 Identity = 165/253 (65.22%), Postives = 179/253 (70.75%), Query Frame = 1
Query: 2011 IMRYPYYGYLSVHGHECQIADRCSACNRSNRTSVIAFLSGAEYEPNRVWDGLRWVNHLPKHWDNPAAMATSKQATKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINGDDELEPENFRGEGA-QTSKKKKKRCLNFSENEFESLSSLLNKADDLNGVKWGGRVGVRGGHGKTLLQAGAASSILDWLSGEAPPEQYGELDLG-LEGAAGGAEGLGEDAREDTDNGDDEEEFHVGRGRRWRTVGSSGGRYG 2763
I+ Y G + C I C C+R ++ F +VWDGLRW HLP+HWD+P A A +KQ KATH+LGDTCKHKSHLFHSLTHYKLYLVSKV+AKI GD LEPENFRGEG TSKKKKKRCLNFSENEFESLS+LL KADDLNGVKWGGR GVRGGHGKT L+ GAASSILDWLSGEA QYG+LDLG LEG G LG FHVGRGRRWRTVGSSGGRYG
Sbjct: 21 ILNYVLTGLVQKLERACLIRSVCLCCSRLT-CPLLPF--------RKVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPHTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLGDLEGQRAG---LGXXXXXXXXXXX----FHVGRGRRWRTVGSSGGRYG 257
BLAST of mRNA_C-linearis_contig78.15370.1 vs. uniprot
Match: D7G8T9_ECTSI (DUF4211 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T9_ECTSI) HSP 1 Score: 263 bits (671), Expect = 8.560e-71 Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = 1
Query: 1711 DACFSHAALFQEMEATQDGGVSSLSMGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPENARYGKAREMVEKKLRISGESMCGTWRQDFRDNIMRYPYYGYLSVHGHECQIADRCSACNRSNRTSVIAFLSGAEYEPNRV 2154
DA FSHAA F EME ++DGG+SSLS+GTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPE+ARYGKA+EMVEKKLRISGES+CG+WRQDFRD IMRYP+YGY V G C++ DRCSACNRSNRTSVIAFLSG+EY+PNRV
Sbjct: 659 DAFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLTDRCSACNRSNRTSVIAFLSGSEYDPNRV 806
BLAST of mRNA_C-linearis_contig78.15370.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 8.220e-11 Identity = 65/212 (30.66%), Postives = 101/212 (47.64%), Query Frame = 1
Query: 1822 YVEYIAKATQGDGAGEAFMKKYVAQPRIPENARYGKAREMVEKKLRISGESMC--GTWRQDFRDNIMRYPYYGYLSVHGHE--CQIADR----------------CSACNRSNRTSVIA-FLSGAEYEPNRVWDGLRWVNHLPKHWDNPAAMATSKQATKATHFLGDTCKHKSHLFHSLTHYKLYLVSKVAAKINGDDELEPENFR-GEGAQ 2391
Y+E++AKA QG G G AFM+K+ ++ + Y KA + E ++ ES+ G+W Q+F + YP+ G+ HE +I D C+AC+R R ++ +L+G+ G + SKQ + LG C++KSHL+H+L HYKLYLV KV ++ + PE+ R GE A+
Sbjct: 940 YLEFLAKAVQGGGKGAAFMEKFDSKRHAFTD--YRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEIDDEEEGQDIDWESLGRPDPCAACHRRQRENMSTMYLAGSR-------GGYK-----------------SKQKVRERLGLGGRCRYKSHLYHTLLHYKLYLVCKVREHMDTTG-VGPEDLRKGEWAE 1124 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15370.1 >prot_C-linearis_contig78.15370.1 ID=prot_C-linearis_contig78.15370.1|Name=mRNA_C-linearis_contig78.15370.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=922bp MSAARRRRVLLESDDEDEKVSRQLAVMPKESPPAEQPRPKKSYNKGKIISback to top mRNA from alignment at C-linearis_contig78:683577..695160- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15370.1 ID=mRNA_C-linearis_contig78.15370.1|Name=mRNA_C-linearis_contig78.15370.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=11584bp|location=Sequence derived from alignment at C-linearis_contig78:683577..695160- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:683577..695160- >mRNA_C-linearis_contig78.15370.1 ID=mRNA_C-linearis_contig78.15370.1|Name=mRNA_C-linearis_contig78.15370.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5532bp|location=Sequence derived from alignment at C-linearis_contig78:683577..695160- (Chordaria linearis ClinC8C monoicous)back to top |