mRNA_C-linearis_contig78.15361.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig78.15361.1
Unique NamemRNA_C-linearis_contig78.15361.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: D7G8V6_ECTSI (Rad51 homolog C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V6_ECTSI)

HSP 1 Score: 465 bits (1197), Expect = 2.430e-160
Identity = 260/306 (84.97%), Postives = 275/306 (89.87%), Query Frame = 2
Query:    2 KKAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHSSRAAXXXXXXXXXXXXXXXKRSSLPSSAAQQHQQPAAKRHVGNAPNQ 910
            KK IITFCRE+DGM+GGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA+NKRKQG PD+E+ VPTQEA LGG+HVWRLHDHAEQLAAVRTLP+FLVAHP+VKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQ HSLAVVLVNQMTTKV+ GH GESSLVPALGESWAHAATNR +    G +RFAELLKSPRLR+KTVPFSVV VGIRD  SSRA XXXXXXXXXXXXXXX        A++   Q AAKRHVG+  NQ
Sbjct:   36 KKPIITFCREIDGMMGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWRLHDHAEQLAAVRTLPEFLVAHPEVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQAHSLAVVLVNQMTTKVMTGHRGESSLVPALGESWAHAATNRLLLLWKGQERFAELLKSPRLRRKTVPFSVVGVGIRDTQSSRAXXXXXXXXXXXXXXXXXXXXXXXXASEGQYQ-AAKRHVGHHANQ 340          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A835ZD48_9STRA (Rad51-like protein c n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD48_9STRA)

HSP 1 Score: 278 bits (712), Expect = 2.950e-86
Identity = 153/273 (56.04%), Postives = 188/273 (68.86%), Query Frame = 2
Query:    5 KAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDME------ATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKL------------VVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            + I+ F R++D M GGGVPRGELTE+ GTPG+GKTQFGMQLAVDVQIP  FGGVGG A+YIDTEGS T ER++Q+  A+V HL +++   RK+  P         A + T+E LL  +HV+R+HDHAEQLAAVR LP F+ +                  VV+DSVAFHFRHA  DM++R RML+ M QQLN++A++ SLAVVL NQMT +  +G  GE  LV ALG++WAHAATNR +     N RFA LLKS R    TVPF V RVGIRD
Sbjct:  103 RGIVCFSRKIDDMFGGGVPRGELTEIMGTPGIGKTQFGMQLAVDVQIPVLFGGVGGEAVYIDTEGSFTPERVAQMADALVSHLARVSAAHRKKQTPAQAEQWAAAAALVTREYLLRRIHVFRVHDHAEQLAAVRALPAFVASRSGXXXXXXXXXXXXXXXVVLDSVAFHFRHACADMALRARMLATMGQQLNQLAREQSLAVVLTNQMTKRYDSGRNGEEKLVAALGDTWAHAATNRLMLFWKENQRFASLLKSSRREPATVPFIVDRVGIRD 375          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI001425896F (DNA repair protein RAD51 homolog 3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425896F)

HSP 1 Score: 257 bits (656), Expect = 2.740e-78
Identity = 135/258 (52.33%), Postives = 179/258 (69.38%), Query Frame = 2
Query:    8 AIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQ-GFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHS 769
            ++ITFC E+D MLGGG+P G+ TE+CG PGVGKTQ  +QLAVDVQIP +FGG+ G A+YIDTEGS  VER S++  AVVEH   +A ++        ME    T++ +L G+H  R  D+ E +A + TLPKFL  HP V+L+V+DSVAFHFRH  +++S+RTR+L+ +AQ L ++A ++++AVVL NQMTTK     GG S L+PALGESW HAAT R +    GN R A L KSP  ++ TVP+ V   G+R   S
Sbjct:   85 SVITFCEEMDNMLGGGIPLGKTTEICGAPGVGKTQICIQLAVDVQIPEEFGGLEGEAMYIDTEGSFMVERASEIAKAVVEHCGNVAASQNNNVQLKSMEKF--TEDGILAGIHYTRCQDYIELIAFINTLPKFLSNHPKVRLIVIDSVAFHFRHDIENLSLRTRLLNGLAQNLIKLAMENTVAVVLTNQMTTKFGREDGG-SKLIPALGESWGHAATVRLILYWQGNQRLAMLYKSPSRQEMTVPYQVTNCGVRSIPS 339          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI00201F1787 (DNA repair protein RAD51 homolog 3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F1787)

HSP 1 Score: 252 bits (644), Expect = 1.460e-76
Identity = 136/258 (52.71%), Postives = 171/258 (66.28%), Query Frame = 2
Query:   11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPT--QEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHS 769
            I TF  ++D +LGGGVP  ++TE CG PG+GKTQ  MQL +DVQIP  FGG+ G  +Y+DTEGS  VERL  + SA VEH   IA   +  G  D++        E LL G+H +R HD+ E L+ V  LPKF+  H  VKLV++DS+AFHFRH F DMS+RTR+L+ MAQ    +A +H LAVVL NQMTTK+  G GG S L+PALGESW HA+T R V    GN+R+A L KSP  ++  VPF +   GIRD  S
Sbjct:   91 IFTFSEKLDDILGGGVPLAKITEFCGAPGIGKTQVCMQLGIDVQIPECFGGLDGETVYVDTEGSFIVERLVDIASATVEHCNNIA---QMDGSVDVKEAANNFNLEKLLSGIHYFRCHDYIELLSTVHLLPKFVSEHKKVKLVIVDSIAFHFRHDFDDMSLRTRLLTSMAQSFIRLATEHKLAVVLTNQMTTKM--GGGGGSHLIPALGESWGHASTIRVVLYWEGNNRYALLYKSPSKKEAVVPFQITMGGIRDVQS 343          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI001CF10B6B (DNA repair protein RAD51 homolog 3-like isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF10B6B)

HSP 1 Score: 251 bits (641), Expect = 1.100e-75
Identity = 129/265 (48.68%), Postives = 182/265 (68.68%), Query Frame = 2
Query:    8 AIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQ-------EALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHSS 772
            +I+TFC ++D MLGGGVP G++TE CG PG+GKTQ G+QLAVDVQIP +FGG+ G A+YIDTEGS  VER+  + +A V+H++ +A +       + E ++ T+       E +L  ++V+R HD+ + +A    LP FL+ H  VKL+V+DS+AF FRH F D+++RTR+L+ +AQ   ++A ++ LAVVL+NQMTT+V     G+S L+PALGESW HA+T R V     N RFA L KSP  ++ TVPF +   G+RD  SS
Sbjct:   94 SIVTFCEQLDDMLGGGVPVGKITEFCGAPGIGKTQIGIQLAVDVQIPDEFGGLNGEAIYIDTEGSFIVERVVDIAAAAVKHMEHVAHSSE---IDETERSLQTEAMRNFQVENILSKIYVFRCHDYMQLIALSHVLPDFLLEHSKVKLIVVDSIAFQFRHDFDDLALRTRLLNGLAQSFIKMACENQLAVVLMNQMTTRVKTSQLGQSHLIPALGESWGHASTIRIVLYWEENQRFANLYKSPSRQEMTVPFKITGDGVRDCFSS 355          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI00148A3B53 (DNA repair protein RAD51 homolog 3-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3B53)

HSP 1 Score: 249 bits (637), Expect = 1.280e-75
Identity = 134/253 (52.96%), Postives = 174/253 (68.77%), Query Frame = 2
Query:   11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            IITF   +D MLGGGVP  ++TE CG PGVGKTQ  MQ+AVDVQIP QFGG+ G A+YIDTEGS  VERL  +  A V+H  ++A   R +GF + E TV   E++L GVH +R HD+ E LA V  LP+F+  HP +K+V++DSVAFHFRH F D+S+RTR+L+ MAQ   ++A +  +A+VL NQMTTK   G   +S LVPALGESW HA+T R +    G  R+A L KSP  ++  VP+ +   G+RD
Sbjct:   90 IITFSEGLDNMLGGGVPLCKITEFCGAPGVGKTQMCMQIAVDVQIPSQFGGLQGEAVYIDTEGSFIVERLVDIAKATVDHCNEMA---RLEGFKEGEITV---ESVLSGVHFYRCHDYVELLATVHLLPEFIKKHPKIKVVLVDSVAFHFRHDFDDLSLRTRLLTTMAQSFIKLATEFKIAIVLTNQMTTKFSPGE--DSRLVPALGESWGHASTIRVILYWEGQKRWAWLYKSPSKKESRVPYQITMGGVRD 334          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A6P4XU31_BRABE (DNA repair protein RAD51 homolog 3-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XU31_BRABE)

HSP 1 Score: 249 bits (637), Expect = 1.930e-75
Identity = 134/255 (52.55%), Postives = 172/255 (67.45%), Query Frame = 2
Query:   11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA--KNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            IITFC  +D +LGGGVP  ++TE CG PGVGKTQ GMQLA+DVQIP  FGG+GG A+Y+DTEGS  V RL  +  A VEH + IA  +N R+Q     + TV   E +L  +H +R+HD  E +A +  LP+FL  HP ++LVVMDS+AF FRH F+D+S+RTR+L+ +AQ    +A  H  AVVLVNQMTTK+     G++ LVPALGESW HA+T R +       R+A L KSP   + TVP+ V   GIRD
Sbjct:   88 IITFCSALDELLGGGVPLTKITEFCGAPGVGKTQMGMQLAIDVQIPCVFGGLGGEAVYVDTEGSFMVHRLEDMAKAAVEHCRHIATVENNREQLEAMSDFTV---EHILSRIHFYRVHDWVELVALINILPEFLQQHPKIRLVVMDSIAFPFRHDFEDLSLRTRLLNGLAQNCIRLADSHKAAVVLVNQMTTKMGHSGDGQAHLVPALGESWGHASTIRVLLFWEAGYRYARLYKSPTREEATVPYQVTMAGIRD 339          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A6P8I9R4_ACTTE (DNA repair protein RAD51 homolog 3-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I9R4_ACTTE)

HSP 1 Score: 249 bits (637), Expect = 4.740e-75
Identity = 128/262 (48.85%), Postives = 175/262 (66.79%), Query Frame = 2
Query:   11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA---------KNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            ++TFC  +D MLGGGVP G++TE CG PG+GKTQ GMQLAVDVQIP +FGGV G A+YIDTEGS  V+R+  + SA ++HL+ +          +N + +   D +      E +L  ++++R H++ + +A    LP+FL  HP VKL+V+DS+AFHFRH F+DM +RTR+L+ +AQ    +A ++ LAVVL+NQMTT+V     G+S L+PALGESW HA+T R V       R A L KSP  ++ TVPF V   GIRD
Sbjct:   80 VVTFCERLDDMLGGGVPTGKITEFCGAPGIGKTQIGMQLAVDVQIPEEFGGVDGAAVYIDTEGSFIVDRVVDIASAAIKHLENVTESADLDESERNLQIESLKDFQV-----EKILSRIYIFRCHEYIQLVALSHLLPEFLKEHPKVKLIVVDSIAFHFRHDFEDMGLRTRLLNGLAQTFIRLACENQLAVVLMNQMTTRVRQNQIGQSHLIPALGESWGHASTIRIVLYWENKQRLATLYKSPTKQEMTVPFQVTSSGIRD 336          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A8B6HFA0_MYTGA (RAD51-like protein 2 n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6HFA0_MYTGA)

HSP 1 Score: 249 bits (636), Expect = 5.310e-75
Identity = 133/253 (52.57%), Postives = 171/253 (67.59%), Query Frame = 2
Query:   11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            IITF  ++D MLGGGVP  ++TE CG PG+GKTQ  MQLAVDVQIP  FGG+ G  +YIDTEGS  VERL  + +A ++H Q+I++ +  +      +   T E +L  +H +R HD+ E LA V  LP F+  HP VKLVV+DS+AFHFRH F D S+RTR+L+ MAQ   ++A ++ +AVVL NQMTTKV   HG  S LVPALGESW HA+T R +    G  R+A L KSP  ++ TVP+ V   GIRD
Sbjct:  123 IITFSEQIDAMLGGGVPLCKITEFCGAPGIGKTQMCMQLAVDVQIPECFGGLDGEVVYIDTEGSFIVERLVDVTTATIQHCQQISQMESDEETKSSMSQFTT-EKVLSRIHYYRCHDYVELLATVHLLPDFIKDHPKVKLVVVDSIAFHFRHDFDDFSLRTRLLTSMAQSFIKLATEYKIAVVLTNQMTTKVK--HGESSQLVPALGESWGHASTVRVILYWEGQQRYAWLYKSPSKKESTVPYQVTMGGIRD 372          
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A7S1SLP5_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLP5_9CHLO)

HSP 1 Score: 248 bits (633), Expect = 9.350e-75
Identity = 130/257 (50.58%), Postives = 175/257 (68.09%), Query Frame = 2
Query:    5 KAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGH--GGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
            + I+TFC +VD MLGGG+P   +TE CG PGVGKTQ GMQ+AVD QIP   GG+ G A+YIDTEGS  +ERL  +  AVV+H+  + +    +     +A   ++E++L G+H +R+HD AEQ+A   TLP+F+  HP V  +++DS+ F FR  FQDM+ RTR+L++MAQQL ++A+   +AVVL+NQ+TTKV      GG S LVPALG+SWAHAAT+R +       RFA L KSP     TVP++V   GIRD
Sbjct:   85 RGIVTFCEKVDRMLGGGIPARAITEFCGVPGVGKTQLGMQIAVDAQIPECMGGLQGEAVYIDTEGSFMMERLLDITDAVVDHVHNLGRRATSEECKT-QAERFSRESVLHGIHYFRVHDAAEQIAVTNTLPQFMDNHPKVCAIIVDSITFQFRQGFQDMAQRTRLLAQMAQQLMQLAESKGIAVVLINQVTTKVRQERTGGGGSRLVPALGDSWAHAATSRVILFWHEGQRFAHLHKSPSRPSTTVPYAVTAAGIRD 340          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8V6_ECTSI2.430e-16084.97Rad51 homolog C n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835ZD48_9STRA2.950e-8656.04Rad51-like protein c n=1 Tax=Tribonema minus TaxID... [more]
UPI001425896F2.740e-7852.33DNA repair protein RAD51 homolog 3-like n=1 Tax=An... [more]
UPI00201F17871.460e-7652.71DNA repair protein RAD51 homolog 3-like n=1 Tax=Ha... [more]
UPI001CF10B6B1.100e-7548.68DNA repair protein RAD51 homolog 3-like isoform X1... [more]
UPI00148A3B531.280e-7552.96DNA repair protein RAD51 homolog 3-like n=1 Tax=Cr... [more]
A0A6P4XU31_BRABE1.930e-7552.55DNA repair protein RAD51 homolog 3-like n=3 Tax=Br... [more]
A0A6P8I9R4_ACTTE4.740e-7548.85DNA repair protein RAD51 homolog 3-like n=1 Tax=Ac... [more]
A0A8B6HFA0_MYTGA5.310e-7552.57RAD51-like protein 2 n=2 Tax=Mytilus TaxID=6548 Re... [more]
A0A7S1SLP5_9CHLO9.350e-7550.58Hypothetical protein n=2 Tax=Tetraselmis chuii Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig78contigC-linearis_contig78:383979..387647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.5
Seed ortholog evalue3.8e-122
Seed eggNOG ortholog2880.D7G8V6
Preferred nameRAD51C
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K10870
KEGG ReactionR01067,R01641,R01830,R06590
KEGG Pathwayko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03440,ko03460,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230,map03440,map03460
KEGG ModuleM00004,M00007,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000819,GO:0001709,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007066,GO:0007127,GO:0007131,GO:0007135,GO:0007140,GO:0007141,GO:0007143,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007293,GO:0007294,GO:0007304,GO:0007306,GO:0007346,GO:0007389,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008821,GO:0009314,GO:0009611,GO:0009628,GO:0009653,GO:0009798,GO:0009888,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010212,GO:0010389,GO:0010564,GO:0010927,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030054,GO:0030154,GO:0030703,GO:0030706,GO:0030707,GO:0030716,GO:0030717,GO:0030720,GO:0030855,GO:0031023,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0033036,GO:0033061,GO:0033063,GO:0033065,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042060,GO:0042148,GO:0042592,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045132,GO:0045144,GO:0045165,GO:0045787,GO:0045931,GO:0046483,GO:0046843,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048476,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0060429,GO:0061982,GO:0061983,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070727,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090305,GO:0090735,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
EggNOG free text desc.strand invasion
EggNOG OGsCOG0468@1,KOG1434@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_004400.1
EC2.2.1.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons7
Model size1362
Cds size882
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930482.6365445-UTR-C-linearis_contig78:383978..3844181622930482.6365445-UTR-C-linearis_contig78:383978..384418Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 383979..384418 -
1690881092.6360033-UTR-C-linearis_contig78:383978..3844181690881092.6360033-UTR-C-linearis_contig78:383978..384418Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 383979..384418 -
1622930482.7886746-UTR-C-linearis_contig78:387607..3876471622930482.7886746-UTR-C-linearis_contig78:387607..387647Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 387608..387647 -
1690881092.717688-UTR-C-linearis_contig78:387607..3876471690881092.717688-UTR-C-linearis_contig78:387607..387647Chordaria linearis ClinC8C monoicousUTRC-linearis_contig78 387608..387647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930482.6574402-CDS-C-linearis_contig78:384418..3846711622930482.6574402-CDS-C-linearis_contig78:384418..384671Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 384419..384671 -
1690881092.6485934-CDS-C-linearis_contig78:384418..3846711690881092.6485934-CDS-C-linearis_contig78:384418..384671Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 384419..384671 -
1622930482.6810443-CDS-C-linearis_contig78:384962..3850781622930482.6810443-CDS-C-linearis_contig78:384962..385078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 384963..385078 -
1690881092.65794-CDS-C-linearis_contig78:384962..3850781690881092.65794-CDS-C-linearis_contig78:384962..385078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 384963..385078 -
1622930482.700688-CDS-C-linearis_contig78:385686..3857641622930482.700688-CDS-C-linearis_contig78:385686..385764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 385687..385764 -
1690881092.6670308-CDS-C-linearis_contig78:385686..3857641690881092.6670308-CDS-C-linearis_contig78:385686..385764Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 385687..385764 -
1622930482.7237303-CDS-C-linearis_contig78:386203..3862961622930482.7237303-CDS-C-linearis_contig78:386203..386296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 386204..386296 -
1690881092.6758904-CDS-C-linearis_contig78:386203..3862961690881092.6758904-CDS-C-linearis_contig78:386203..386296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 386204..386296 -
1622930482.7373452-CDS-C-linearis_contig78:386505..3866191622930482.7373452-CDS-C-linearis_contig78:386505..386619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 386506..386619 -
1690881092.6845868-CDS-C-linearis_contig78:386505..3866191690881092.6845868-CDS-C-linearis_contig78:386505..386619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 386506..386619 -
1622930482.7562852-CDS-C-linearis_contig78:387167..3873561622930482.7562852-CDS-C-linearis_contig78:387167..387356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 387168..387356 -
1690881092.6932385-CDS-C-linearis_contig78:387167..3873561690881092.6932385-CDS-C-linearis_contig78:387167..387356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 387168..387356 -
1622930482.7731018-CDS-C-linearis_contig78:387568..3876071622930482.7731018-CDS-C-linearis_contig78:387568..387607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 387569..387607 -
1690881092.7051566-CDS-C-linearis_contig78:387568..3876071690881092.7051566-CDS-C-linearis_contig78:387568..387607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig78 387569..387607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig78.15361.1prot_C-linearis_contig78.15361.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig78 384419..387607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig78.15361.1

>prot_C-linearis_contig78.15361.1 ID=prot_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=294bp
MLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYID
TEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGV
HVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVR
TRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESW
AHAATNRCVGGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHSSRAAAAA
AATAASAGSGSGKRSSLPSSAAQQHQQPAAKRHVGNAPNQRPL*
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mRNA from alignment at C-linearis_contig78:383979..387647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig78.15361.1 ID=mRNA_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3669bp|location=Sequence derived from alignment at C-linearis_contig78:383979..387647- (Chordaria linearis ClinC8C monoicous)
CAAAAAGGCCATCATCACTTTCTGCAGAGAGGTCGACGGCATGCTGGGCG GCGGCGTGCCGCGGGGAGAGCTCACAGAGGTGCCGCGCTTTCTTCACGGC CCACCGAGATTTGAGTTTGTGTAGTAGTTGCAGCAGCAGTAGTTGCAGAA GTTGCAGTAGTAGCGGTTGCTGCTGCTGCTGCTGCTGCTGCATGCTTTGT TTTGGGGGGGGGGCTTTGGACTTCACAGATACGACAACTGTTTGCCACAA CTCGCCCGTCTCGCCTCTCCTGCGCTGTGCAATGATCGAAGGTTTGTGGA ACGCCGGGGGTGGGCAAGACCCAGTTCGGCATGCAGCTGGCTGTGGACGT GCAAATCCCGCACCAATTCGGCGGCGTCGGGGGGGGGGCTTTGTACATTG ACACGGAGGGGAGCCTGACCGTGGAGAGACTCTCTCAGCTGTGTTCGGCG GTGGTGGAGCACCTCCAGAAGATCGCCAAGGTACATACGTATGTGAATGT GTGCTGCCAACCTGCCTCGAACGTTCTGCCAGCTCGTGCAAACGGGCTCT TTTCTTGTTTTCTGTGGTTGTTGCTGCGCGTTGCAGCGTGATTTAGCGTG AAGCGCTACAAGCCAGTTTTTGATTGTGCAGCTTCGCGCTGTTGTCGTCG GGTTCACGCGACTTGTCAGCTGTAGATAACATTTAGGCGGAGACATGATA CGAAGTATCATATGATATGATGTGATGTGATGTGATGTCGTACATACGTG GTGTTTATTCAGATGAATGTTATTCTCAGATGTATGTGCCCTATCTTGGG GCGTTCATGCACAAGAGGGTGCCCCGCACGCTGCTGAACGCCAATGGCTC TCGAAAAAAAGGTGTTTTGCCGCGTTGGCACAAAGACGGCAGCGGTCTCG CGATGCACTCTCGAGCGTGGCGCCACTTTTGGCTGTGCTGTGGCGTGTTG GTGTTGTGCTTTTGTGCCGATGTCGCCTGCTTGGTGCGAGTCTTCCCTCC TCCGCGCCCATGCTTTGCTTTGCCGCAGAACAAACGAAAACAGGGGTTTC CAGACATGGAGGCGACGGTGCCAACCCAGGAGGCGCTGTTGGGCGGCGTC CATGTCTGGAGACTACACGACCACGCCGAACAGCTAGCCGCGGTGAGGGC CCCCGTCCATTTCCGCAATAACTACTGCGGAGAGTCCCAAGGGCACCGGT CCAGCCCGCCTATGTAGCGTGATTTAAGAGCCTGTTTTGTACGAAGAGGT TGGTTCTCCGTAGCTCGGGCCGTTTTTTTGTCCAACACTCTACTTTTTTT TGTGTTTCGACACTTTTTTGAGTCCGCTTTCTTGGCCGTCGCTGTGTGTA GGTGCGAACCCTTCCCAAGTTTTTGGTGGCGCACCCGGACGTGAAGCTGG TGGTGATGGACAGCGTGGCGTTTCACTTCAGGCATGCCTTCCAGGTACGA ACACCTGCTGCCGATACGGTACGATGGATTCCGCTGGTTGGGCCATTTGG AACGAATCTTCGGGACGAAGATCGACGAAGATCGTCTCACAGTTGTAGTG CGCAAGCTCATCCGCGCCCTGCTTCTAAGCTGATGCCCCCGCGTGTGTCA CGTGCGGCGTAACCATTCAGAGCGCGCACAGCTTGCGATAGCGTTATTCT CCGCCTTGCCCTCTGCTATTTGTGCAGCATCCAAGCAAGGTCGACTGACT GGGAGGGAGGGCTGCTTTGCTGCCCTCCCACACCCTTACACTTATTTTAT TTTGCTGTTGCTTTCCTTGCGTTCCTGCCGTGCAAATATCGCGAAAAAAT CGCTGGAACCCCTTTTGTGTGGGTCCAATTCGAAACCGCTGGTCTGGGTG GGGTGGGGTGGGGTCGGGTTGGGGGCGCCGCAGGACATGAGCGTGCGCAC GCGGATGCTGAGCAGGATGGCGCAGCAACTCAACGAGGTCGCGCAGAAGC ACTCGCTGGCGGTGAGAAAAAGCCGGTACAACCGCCGTGTGGTTGATTGA GAGGGGGTTTACCGCGCTCGTGCTCTGATTGGCAGACGTTTGCTTTCCCT CGCGCGCCGGGTTGATCGGCTTTGGATTTTGTTGGTGTCGCTTTGGGCAT CGATGAATCACCATCACGGGATGCGAAGTGACATGACCGCGAAAAAAAGG AACACAGCAGTTGCTCTGAAACACCAGGCAGTATCGAAGGGTGTCATCTG CGCCCAAATTCTCAGCCAGAAATTGAAGTGCAAACAATATTTGTTTTTCG TCTGCCCTTCGACGTGTTGCAGATAGATCCAACAAAATCCAACCCAACGC CCACTACTCGTTCACTCGATGTTTACCGCATTATACCTGTGTACTGATAC TTCTACAATAATGTATAAACCTGATAAAACCTGATAACGAGAACCAAGAT TGTTCAAACACGTGCGACTACGAAGAAAAGTGTTGACGTGAACAATATTT TGTTATAGAGATTTTCCTTGCGTCTCACTCCCTTCCTTTCCACCTTTGTT TTCTTTCACCCGACCGATCAATGGATGGATCGTATCTTACCGGCCGCATC GATCGTGTTTTTTTGAAAGGTTGTCCTCGTGAATCAGATGACCACGAAGG TCGTGGCCGGGCACGGCGGGGAGTCGTCCCTGGTTCCGGCGCTGGGGGAG AGCTGGGCACATGCCGCGACCAACCGGTGCGTTGGGTTGCTGCTCGCTAA CAATACTATTTCTGTTGTTGTTATTGTTGTTGTTGTTGTCGTTTTTCTGT GCATGCGTTGTGCGTTGGTGTAGTCTCAAAGCTTGGCTGCTCAGGCTGCT ACTGCTTTCCTCTCTCCTCTCGGGGGGGCCTCTCTCCGTCAAATATTGTC GCCAAGAGCTGGCCGTCGTTGTTACGATACTGCTGTGACCCCGCCCAACC CCGACGTCCGCCCGCCTTTCTTTCTCTCCCTCTCCCCCCCTCTCTCTCTC TCTGCCAGCCTGCTCCTCTTCTGGAGGGGTAACGACAGGTTCGCCGAGCT GCTCAAGTCCCCACGCCTCCGCCAAAAGACGGTCCCGTTTTCCGTCGTCC GGGTCGGTATCCGAGATGCCCATTCCTCGCGAGCGGCGGCGGCGGCGGCA GCGACGGCGGCTTCGGCAGGATCTGGATCGGGAAAACGCTCGTCCCTGCC TTCGTCGGCCGCGCAACAGCACCAACAGCCCGCCGCGAAACGTCACGTGG GCAACGCCCCGAACCAGCGACCGTTGTAGCACGGGCGAACGGGTGGGATG GGACCCAGCGGGCCAGGTTGTCGTTCGGGTTTGAGGGCCGCATCTTTGTG CGCTAGAAACCTGACCGTGCCGTGTCCAAAAAGTCGCGAGGCTGAAACGC GGGGCTCCATCTGCTAGACAAACAATAGGTTCTGCCCAAGTGCGATGGGT CACGTGGAGTACAGCAGGAGCAGCAGGTCGTAGAAAAAGAAAGAGCATTG ATTGTGCTTTGTGTGGTGGCCGTGGTGTCTTCTTAGTCCACACCAGAGAC GATGAGTCGCAGAATTGCAAGGGTTTCAACCCTCACCCCGCCTAGGTGCT GATCCGTGTCTTGCTCATGTATACCGTGATCGACGCATGAGGAATCAGGC TGCCCACCACCCTGCGCCTTCTAGGGTAGAGCCCCTGATTGATCTGATCA CACTTCCAACCAACACCAC
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Coding sequence (CDS) from alignment at C-linearis_contig78:383979..387647-

>mRNA_C-linearis_contig78.15361.1 ID=mRNA_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at C-linearis_contig78:383979..387647- (Chordaria linearis ClinC8C monoicous)
ATGCTGGGCGGCGGCGTGCCGCGGGGAGAGCTCACAGAGATGCTGGGCGG
CGGCGTGCCGCGGGGAGAGCTCACAGAGGTTTGTGGAACGCCGGGGGTGG
GCAAGACCCAGTTCGGCATGCAGCTGGCTGTGGACGTGCAAATCCCGCAC
CAATTCGGCGGCGTCGGGGGGGGGGCTTTGTACATTGACACGGAGGGGAG
CCTGACCGTGGAGAGACTCTCTCAGCTGTGTTCGGCGGTGGTGGAGCACC
TCCAGAAGATCGCCAAGGTTTGTGGAACGCCGGGGGTGGGCAAGACCCAG
TTCGGCATGCAGCTGGCTGTGGACGTGCAAATCCCGCACCAATTCGGCGG
CGTCGGGGGGGGGGCTTTGTACATTGACACGGAGGGGAGCCTGACCGTGG
AGAGACTCTCTCAGCTGTGTTCGGCGGTGGTGGAGCACCTCCAGAAGATC
GCCAAGAACAAACGAAAACAGGGGTTTCCAGACATGGAGGCGACGGTGCC
AACCCAGGAGGCGCTGTTGGGCGGCGTCCATGTCTGGAGACTACACGACC
ACGCCGAACAGCTAGCCGCGAACAAACGAAAACAGGGGTTTCCAGACATG
GAGGCGACGGTGCCAACCCAGGAGGCGCTGTTGGGCGGCGTCCATGTCTG
GAGACTACACGACCACGCCGAACAGCTAGCCGCGGTGCGAACCCTTCCCA
AGTTTTTGGTGGCGCACCCGGACGTGAAGCTGGTGGTGATGGACAGCGTG
GCGTTTCACTTCAGGCATGCCTTCCAGGTGCGAACCCTTCCCAAGTTTTT
GGTGGCGCACCCGGACGTGAAGCTGGTGGTGATGGACAGCGTGGCGTTTC
ACTTCAGGCATGCCTTCCAGGACATGAGCGTGCGCACGCGGATGCTGAGC
AGGATGGCGCAGCAACTCAACGAGGTCGCGCAGAAGCACTCGCTGGCGGA
CATGAGCGTGCGCACGCGGATGCTGAGCAGGATGGCGCAGCAACTCAACG
AGGTCGCGCAGAAGCACTCGCTGGCGGTTGTCCTCGTGAATCAGATGACC
ACGAAGGTCGTGGCCGGGCACGGCGGGGAGTCGTCCCTGGTTCCGGCGCT
GGGGGAGAGCTGGGCACATGCCGCGACCAACCGGTGCGTTGGGTTGTCCT
CGTGAATCAGATGACCACGAAGGTCGTGGCCGGGCACGGCGGGGAGTCGT
CCCTGGTTCCGGCGCTGGGGGAGAGCTGGGCACATGCCGCGACCAACCGG
TGCGTTGGGGGTAACGACAGGTTCGCCGAGCTGCTCAAGTCCCCACGCCT
CCGCCAAAAGACGGTCCCGTTTTCCGTCGTCCGGGTCGGTATCCGAGATG
CCCATTCCTCGCGAGCGGCGGCGGCGGCGGCAGCGACGGCGGCTTCGGCA
GGATCTGGATCGGGAAAACGCTCGTCCCTGCCTTCGTCGGCCGCGCAACA
GCACCAACAGCCCGCCGCGAAACGTCACGTGGGCAACGCCCCGAACCAGC
GACCGTTGTAGGGGTAACGACAGGTTCGCCGAGCTGCTCAAGTCCCCACG
CCTCCGCCAAAAGACGGTCCCGTTTTCCGTCGTCCGGGTCGGTATCCGAG
ATGCCCATTCCTCGCGAGCGGCGGCGGCGGCGGCAGCGACGGCGGCTTCG
GCAGGATCTGGATCGGGAAAACGCTCGTCCCTGCCTTCGTCGGCCGCGCA
ACAGCACCAACAGCCCGCCGCGAAACGTCACGTGGGCAACGCCCCGAACC
AGCGACCGTTGTAG
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