mRNA_C-linearis_contig78.15350.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 1532 bits (3967), Expect = 0.000e+0 Identity = 1167/2058 (56.71%), Postives = 1275/2058 (61.95%), Query Frame = 1
Query: 1 MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHRNDPNENATAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGFYLELAGTFPLAGNIASLATIPVAGTAATAXXXXXXXXXXXXPDILVVSFGDAKLALVAYDALLGRLETVSIHNFDAAAIGPGAAGVESGYGLASALKDRPATISAADPAGRCLAAVVAGCQLVVLPARRHVPRSVFVSEEAAERRRVVXXXXXXXXXXXXXXXXXXXXXX----VXXXXXXXXXXXXXXXXEASGESGSXXXXXXXXXXXXXXXXXXXGNVSRAHAAVSKPFTIDLEEAGVTGFIKAATFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLVVFSINLTQGRAPSVWQVDNLPHDSWDLVAVPSPVGGVQVISTNAVMHVNQSEVRSILAVNGYAGATVEPALLGCPLRRGHSDWGWASFRRSHSEQEVVDLSSYDVCIELDVVKCAFLTATSMLLSLRTGEVYALRLHLTAAVPPSVRAGG--------GRGAPNRVVGQSMRPVGRASPCSVLAVDRVGGXXXXXXXXXASTGLVFMGSRVGDSLLVKYAVASAGTQPGKRGKGAAGVGTAGAAGLTRELKVEAEKEKEEWGGDGRERGSANGVVGGXXXXXXXXXXXXXXXXXXXXEGEALSDEPSAGVGRAAAVEEDPKEAAGLAGMEVDNSLGNGGXXXXXXXXXXXXXXXXAADPSVASDDASKEAATDTPAPRTSATEAGGAPVVPAADGYGIIDS-----------GVAAATPSKQPETAQKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGDHDSKQPDKKRSRVSSSXXXGRNDDAAVSPADIAPPPD---AAAAGIQGGVPPXXE-GGDRGS--------GPPYAVEAKRAASSDEKGAVAEAVDAMDTTSPRSADPAPATPAAGTTRLIREELEMIHEEE-DLYGARLGSSL--GARTRGSRAAPLANLGSKVGERIIEAVGFRLKVVDSICSLGPIVDAALVPSAYHVPKTD-----------------VPGSGHRAAPAGXXXXXXXXXXXGIRTSLVCAAGYGRQGSLSVFSAGLRTEVVVELSMRGATGVYTAPEGGGRPSGGRNRDTLVLVSCSSPPSPQAPLAADAGD--ESRPGHTRVLAFEEDARVVELADGTTGNPFVCDAATADVCVMAGGTVVQAHAQGLRVTRNRAAVFDVLASDDPEFGGLGAEAGVPVVRAAAAGSHACCLLSNLRLHLMALDDGDLMPLLPAEE-GEEXXXXXXXXXXXXGVWEGVEAVFMFGIQVGAVSEAETQQQRGRRQGL--EKGWWGGAAWGGTGSKSASAEVADATKPPLSGDQGEE------EEVEDTTSAYLVVCRKGGSVEVFSCEGRGAEGTRTRPVFRAAGAALAPSTLWNELLLPPVAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPVIDGEGEDGGVGALAVATGVVVANGRRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSPVPAADPMEVD--GASPDAAAXXXXXEGGDKRAL--AVLTGGGKEGEED--------SVVCPAVVDVIVHPVGAVDGPAELRRLVLAMYLDNGSLLVYEARMCISPSSLSLRREQVTCFSKLCHDLITRPVKGVPPEAAVPNPARGRALRAVRSAAGQEGICFARPGCRSALGHFVAEKVRLGATVHGLIHLPHQLAQPGKTGDILKHLLRGRGHYVALVSTTEDALAEQPKTGLSKGEGEGGEQXXXXXXXXXXAAGLLDRHIVRHKASINRCSTAINNWTVADPSLGGAPPLLVPSFELRVVALTPGSTPPANSGNAATSPLEPTSSSTTEADH---DDKSGGSSGGKAEGEXXXXXXXXRGAGNVSGQAAEAALLLSSEAVESHPMDSGENGICMTLVRLEQGGSPRMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAVKLRQVFAKEQLGPVTGE 5931
MTSTAI+TCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKAS LELYRVHR+D + XXXXXXXXXXXXXXXXX +G+YLELAGTFPLAGNI +LA IP DILVVSFG AK+ALVAYD++LGRLET+SIHNFDA AIGPGA GVESGYGLA+ALKDRP TIS++DPAGRCLAAVVAGCQLVVLPARRHVP SVFVSEEA XXXXXXXXXXXXXXX V XXXXXXXXXXXXXXX S + + + AVSKPFTIDLEEAG+TGFIKAA FLEGFHEPALALLYEPIQTCAGRLASKRSTCRL + SINLTQGRAP +WQV+NLPHDSWDLV VPSP+GG+QVISTNAVMHVNQSEVRSILAVNGYA ATV+PALL CPLR G SDWGW SFRRSH E+EVVDLSSYDVCIELDVV+CAFLT TSMLLSLRTGEVYALRLHLT + A G G PNRVVGQSMRPVGRASPCSVLAV XXXXXXXXXAS GLVFMGSRVGDSLLV Y+VASAGT+PG GKGAA RE K E XXXXXXXXXXXXXXXXXXXX LAGM+VD ++G+G A +A D + T GGA + ADG G + S AATP+KQ A AGD+D QPDKKRSRVS+ +D A S + P + A AA GG P GG+ G+ P + E+ R A++D + DP P LYGAR+G+S GA G AA LA LGSK GER+IEAVGFRLKVVDSIC+LGPIVDAALVPSAYHVPKT XXXXXXXXXXXGIRTSLVCAAGYG QGSL+VFSAGLRTEVVVELS+ GATGVY++ EG ++R GHTRVLAFEEDA+VVEL +G GNPFVCDAATADVC MAGGTVVQAH QGLRVTRNR V DVLAS+DP+ GGLGA+AGV V+RAAAAGSHACCLLSNLRLHLMALDDGDLMP+ EE GEE GVWE VEAV MFG+Q G S E +R +GL +KGWWGG+AWG G + +P GD GEE E + AY+VVCR+GG+VEVFSCEG GAE TR RPVFRA GAALAP TLWNELLL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAVATG+++ANGRRG+ + P++DPMEVD +PD+AA G A V G G SVVCPAV DVIVHPVGAV GP ELRRLVLAM+LDNGSLLVYEARM +SP + REQV CFSKL HDLITRPVKGVPPEAA+ +P RGRALR VRSAAGQEG+CFARPGCRSALGHFVAEKVRLGATVHGL+HLPH LA GKTGDILK LLR RGHYVALVST EDAL QPK+GL EGE GEQ XXXXX AAGLLDRH V+HK NWTVADPSLGGAPPLLVP FELRV+AL PG+ ++ G SGG+ + G+V G AEA L+LS+ VESHPMDS ENG+CMTLVRLEQGG+PRMYVAVGTGMNEPQGEDKAARGRL+L EVDYAYLAREDGKHEHAVKLRQVFAKEQLGPV+GE
Sbjct: 1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXXA---------------SGYYLELAGTFPLAGNITALAVIP---------------------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPGSVFVSEEAKRXXXXXXXXXXXXXXXXXXXXAAGAGESAAGGVAXXXXXXXXXXXXXXXXXSVSARESDSEGEEDGGLGNGATAKGDGGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSMLLSLRTGEVYALRLHLTTVTAAAADAAGCSRPPGGAAFGTPNRVVGQSMRPVGRASPCSVLAVAXXX-XXXXXXXXXASKGLVFMGSRVGDSLLVDYSVASAGTRPG--GKGAAVP--------KREPKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT-LAGMQVDANVGSGDGSAAMSTRSPGGDGKKVAG----------DADADGKPSEITETSGGGAEI---ADGPGAVTSPPIENGNDGSPDPPAATPTKQEAEALSSSPQPDDGEEAGEGKDAGSRGGSAKRGRAERPSSGGDVG-----------------------AGDNDG-QPDKKRSRVSA---CADGEDDAASSGEAVPATEETTATAAAAVGGAPASTAVGGEEGAEALGDGVAAPTVSSESGRPAAAD-----------------AAIDPTPXXXXXXXXXXXXXXXXXXXXXXXQLYGARIGASASEGADGSGGEAA-LARLGSKDGERVIEAVGFRLKVVDSICTLGPIVDAALVPSAYHVPKTTKLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIRTSLVCAAGYGGQGSLAVFSAGLRTEVVVELSVPGATGVYSSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTRAGHTRVLAFEEDAKVVELPEGD-GNPFVCDAATADVCSMAGGTVVQAHKQGLRVTRNRDPVQDVLASEDPDLGGLGADAGVTVLRAAAAGSHACCLLSNLRLHLMALDDGDLMPVGSVEEAGEEGEGGG-------GVWEEVEAVCMFGVQKGG-SVGEQSPERYEEEGLPAQKGWWGGSAWGEAGGSGS--------EPTAPGDDGEEAGSSNGEARVEHVRAYVVVCRRGGTVEVFSCEGEGAEETRARPVFRATGAALAPPTLWNELLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XLAVATGIILANGRRGAAGRGGGKKVDGEANGAG-------------------------TAAPSSDPMEVDDGATAPDSAAVDASASGEAPSAPDETVEKAGADAGXXXXXXXXXXXSVVCPAVTDVIVHPVGAVGGPPELRRLVLAMHLDNGSLLVYEARMVVSPLAAFGGREQVVCFSKLSHDLITRPVKGVPPEAALFDPGRGRALRGVRSAAGQEGVCFARPGCRSALGHFVAEKVRLGATVHGLVHLPHDLAHAGKTGDILKQLLRARGHYVALVSTMEDALVAQPKSGLK--EGEEGEQGDGDXXXXXEAAGLLDRHTVKHK-----------NWTVADPSLGGAPPLLVPRFELRVLALAPGAVSAXXXXXXXXXXXXXXXXXXXXXXXXTPEEGEGRRSGGRGQD------------GSVPGNEAEA-LMLSAAVVESHPMDSDENGVCMTLVRLEQGGAPRMYVAVGTGMNEPQGEDKAARGRLILLEVDYAYLAREDGKHEHAVKLRQVFAKEQLGPVSGE 1880
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI) HSP 1 Score: 481 bits (1238), Expect = 4.470e-152 Identity = 233/245 (95.10%), Postives = 240/245 (97.96%), Query Frame = 1
Query: 6004 TRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRTRGNLRDGARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTSRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLASLF 6738
+RWDPK+CTLELIGFHDPRVYV+SLSVIK +FILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFS EYLIDEPGMAIVV DGRRN+KVLQYAPNATNSRGGTKLLCQSDFYLGSRV KLTRRRTRGNLRDGARYCLLAGTLDGGLGA+LPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT RYETKQNMLDGSLLWRFVGLDA+TQHDLTRAIGTTVDRVMANLLDIDLASLF
Sbjct: 11 SRWDPKTCTLELIGFHDPRVYVMSLSVIKHKFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSAEYLIDEPGMAIVVADGRRNVKVLQYAPNATNSRGGTKLLCQSDFYLGSRVGKLTRRRTRGNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTFRYETKQNMLDGSLLWRFVGLDAKTQHDLTRAIGTTVDRVMANLLDIDLASLF 255
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A835Z873_9STRA (Cleavage/polyadenylation specificity factor, A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z873_9STRA) HSP 1 Score: 251 bits (640), Expect = 2.560e-71 Identity = 121/268 (45.15%), Postives = 176/268 (65.67%), Query Frame = 1
Query: 5932 SGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRTRGNLRDGARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDH----GPTSRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDID 6723
+GPV AVAQ+ R++ + + + WDPKS +L +G ++ YV+++SV+K F+++GD SVQ ++WR+ED S+ L+KD+E QV++T +L+D+P + IVVGD NIK+L+YAP SRGG +L+C +DF++G+ V +R R N + R+ G LDG + + P++ER FRRLYALQG+M NAL H NPR RLF + + +LDG+LLWRFV L A+ Q +LTRAIGTTVD V+ +LLD+D
Sbjct: 3 AGPVGAVAQISRYVATAAAASITILEWDPKSDSLRPVGIYEASQYVVTMSVVKT-FLVLGDVMNSVQFLMWRDEDRSINQLAKDYEPTQVYATVFLVDQPSLGIVVGDSSGNIKILRYAPQLLASRGGHRLVCDADFHIGAPVGAFGPQRLRNNKLNAPRFGAAVGGLDGSVALLAPLEERAFRRLYALQGVMCNALEHGAGVNPRGARLFRSQLPAAAAAEGGRMKGVLDGALLWRFVSLPAQVQCELTRAIGTTVDAVLLSLLDVD 269
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A2D4CF34_PYTIN (CPSF_A domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF34_PYTIN) HSP 1 Score: 232 bits (592), Expect = 1.490e-63 Identity = 133/348 (38.22%), Postives = 200/348 (57.47%), Query Frame = 1
Query: 5752 YVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV-KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRTRGNLRDGAR---------------YCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPTSR---------YETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDI 6720
YV +GTG P GED++ +GRLLL+E+DYA +G+ + KLR +F KE G +S V+QLG H++ +VG K+IV ++ KS L F+D ++Y++SLSVIKD +++ D Y SV + WRE+ L L+KD+E + +TE+ + E +A++ GD N+ V+Q+AP SRGG +LL SDF+LG ++ + R+ T + A+ Y L G+ +G +GAI+ V ERVFRRL+ LQ +M N L N A NPR +R+ R + K+ LDG +L+RF+ LD Q +L R IGTT + ++ NLL++
Sbjct: 29 YVVIGTGFVGPHGEDESGKGRLLLYELDYAQYTTAEGETSAKLPKLRLIFIKEH------HHGAISFVSQLGPHVLAAVGMKLIV--YEFKSDQLTACAFYDAQMYIVSLSVIKD-YVMYADVYKSVHFLRWREKQRQLQLLAKDYEPLAITATEFSVAEKKLALLAGDMEENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQITSMIRKATGTSNPPAAQMAGHRKHQEQPSQSQYVTLLGSSEGSVGAIMAVGERVFRRLFTLQNVMINTLPQNCALNPREFRMMKSNGGRRTGRPDAWCKQKWKKGFLDGHVLFRFLHLDYVAQKELARCIGTTPEVIIHNLLEV 367
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A662X1P8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1P8_9STRA) HSP 1 Score: 237 bits (604), Expect = 9.740e-59 Identity = 140/350 (40.00%), Postives = 209/350 (59.71%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV--KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRT-------RGNLRDGAR---YCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT---------SRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R Y+ +GTG P GED++ RGRLLL+E+DYA +E+G KLR VF KE G +S VAQLG +++ +VG K+IV ++ KS L F+D +++++SLSV++D F++ GD + SV + W+E+ LT L+KD+E V +TE+ + E +A++ D N+ V+Q+AP SRGG +LL SDF+LG +VA + R+R R N R A Y + G +GG+GA++PV ERVFRRL+ LQ +M N L N A NPR +R+ S+++ K++ LD +L+RF+ LD Q +L R IGTT + V+ NLL++ A+
Sbjct: 1440 RPYLVIGTGCVGPHGEDESGRGRLLLYELDYAQYVKEEGGTTSGKLPKLRLVFIKEH------RQGAISMVAQLGPYVLAAVGSKLIV--YEFKSEQLIGCAFYDAQMFIVSLSVVRD-FVMYGDVFKSVHFLRWKEKQRQLTLLAKDYEPLAVSTTEFNVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRTSDFHLGVQVASMFRKRVDTGGQMVRTNGRASAPPGYYVNVLGNSEGGVGALIPVGERVFRRLFTLQNVMINTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKHKWKKSFLDAFVLFRFLRLDYVAQKELARCIGTTPEVVIHNLLEVQRAT 1780
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A833S4Z4_PHYIN (CPSF A subunit region n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S4Z4_PHYIN) HSP 1 Score: 236 bits (603), Expect = 1.120e-58 Identity = 142/351 (40.46%), Postives = 206/351 (58.69%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV--KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRR----------TRG-NLRDGARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT---------SRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R Y+ VGTG P GED++ RGRLLL+E+DYA E+G KLR VF KE G +S V+QLG +++ +VG K+IV ++ KS L F+D ++Y+++LSV+KD F++ GD Y SV + WRE L L+KD+E V +TE+ + E +A++ D N+ V+Q+AP SRGG +LL SDF+LG +V+ + R+R T G N + Y + GT +GG+GA++PV ERVFRRL+ LQ +M N L N A NPR +R+ S+ + K++ LD +L+RF+ LD Q +L R IGTT + VM NLL++ A+
Sbjct: 1315 RPYLVVGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEH------RQGAISMVSQLGPYVLAAVGSKLIV--YEFKSEQLIGCAFYDAQMYIVTLSVVKD-FVMYGDVYKSVHFLRWREMQRQLVLLAKDYEPLAVSATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDASGSVVSATNGRNAAPLSNYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVMHNLLEVQHAT 1656
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A2P4X3K7_9STRA (Putative cleavage and polyadenylation specificity factor CPSF (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3K7_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.200e-58 Identity = 139/351 (39.60%), Postives = 207/351 (58.97%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV--KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRR--TRGNLRDGAR---------YCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT---------SRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R Y+ +GTG P GED++ RGRLLL+E+DYA E+G KLR VF KE G +S V+QLG +++ +VG K+IV ++ KS L F+D ++++++L+V+KD F++ GD Y SV + WRE L L+KD+E V +TE+ + E +A++ D N+ VLQ+AP+ SRGG +LL SDF+LG +VA + R+R + G++ A Y + G +GG+GA++PV ERVFRRL+ LQ +M N L N A NPR +R+ S+ + K++ LD +L+RF+ LD Q +L R IGTT + VM NLL++ A+
Sbjct: 737 RPYLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEH------RQGAISMVSQLGPYVLAAVGSKLIV--YEFKSEQLIGCAFYDAQMFIVTLNVVKD-FVMYGDVYKSVNFLRWREMQRQLVLLAKDYEPLAVSATEFSVFEKKLALLAVDMDENLHVLQFAPHDIESRGGQRLLRVSDFHLGVQVASMFRKRVDSPGSIAPAANGHAAPPPSCYVNVMGNSEGGVGALIPVGERVFRRLFTLQNVMVNTLHQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLHLDYVAQKELARCIGTTPEVVMHNLLEVQHAT 1078
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: D0NYE8_PHYIT (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=D0NYE8_PHYIT) HSP 1 Score: 236 bits (603), Expect = 1.230e-58 Identity = 142/351 (40.46%), Postives = 206/351 (58.69%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV--KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRR----------TRG-NLRDGARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT---------SRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R Y+ VGTG P GED++ RGRLLL+E+DYA E+G KLR VF KE G +S V+QLG +++ +VG K+IV ++ KS L F+D ++Y+++LSV+KD F++ GD Y SV + WRE L L+KD+E V +TE+ + E +A++ D N+ V+Q+AP SRGG +LL SDF+LG +V+ + R+R T G N + Y + GT +GG+GA++PV ERVFRRL+ LQ +M N L N A NPR +R+ S+ + K++ LD +L+RF+ LD Q +L R IGTT + VM NLL++ A+
Sbjct: 1399 RPYLVVGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEH------RQGAISMVSQLGPYVLAAVGSKLIV--YEFKSEQLIGCAFYDAQMYIVTLSVVKD-FVMYGDVYKSVHFLRWREMQRQLVLLAKDYEPLAVSATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKRVDASGSVVSATNGRNAAPLSNYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVMHNLLEVQHAT 1740
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: H3GUH2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUH2_PHYRM) HSP 1 Score: 236 bits (603), Expect = 1.270e-58 Identity = 141/350 (40.29%), Postives = 207/350 (59.14%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYA-YLAREDGKHEHAVKLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRTRG--------NLRDGAR---YCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLFDHGPT---------SRYETKQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R Y+ +GTG P GED++ RGRLLL+E+DYA Y+ E G KLR VF KE G +SAV QLG +++ +VG KVIV ++ KS L F+D ++++++L+V+KD F++ GD Y SV + WRE+ L L+KD+E V +TE+ + E +A++ D N+ V+Q+AP SRGG +LL SDF+LG +VA + R+R N R A Y + G+ +GG+GA++PV ERVFRRL+ LQ +M N L N A NPR +R+ S+ + K++ LD +L+RF+ LD Q +L R IGTT + V+ NLL++ A+
Sbjct: 1431 RPYLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGASGKLPKLRLVFIKEH------RQGAISAVTQLGPYVLAAVGSKVIV--YEFKSEQLIGCAFYDAQMFIVTLNVVKD-FVMYGDVYKSVHFLRWREKQRQLVLLAKDYEPLAVSTTEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVASMFRKRVDAHGPVVPATNGRPSALPSFYVNVMGSSEGGVGALIPVSERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQQRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHAT 1771
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Match: A0A5D6Z0P8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Z0P8_9STRA) HSP 1 Score: 236 bits (601), Expect = 2.240e-58 Identity = 134/340 (39.41%), Postives = 202/340 (59.41%), Query Frame = 1
Query: 5746 RMYVAVGTGMNEPQGEDKAARGRLLLFEVDYAYLAREDGKHEHAV-KLRQVFAKEQLGPVTGESGPVSAVAQLGRHLILSVGKKVIVTRWDPKSCTLELIGFHDPRVYVISLSVIKDRFILVGDAYGSVQLVVWREEDHSLTALSKDHEDCQVFSTEYLIDEPGMAIVVGDGRRNIKVLQYAPNATNSRGGTKLLCQSDFYLGSRVAKLTRRRTRGNLRDG-ARYCLLAGTLDGGLGAILPVDERVFRRLYALQGIMSNALGHNGAANPRAYRLF---DHGPTSRYET------KQNMLDGSLLWRFVGLDARTQHDLTRAIGTTVDRVMANLLDIDLAS 6732
R YV VGTG P GED++ RGRLLL+E+DYA G + KLR +F K+ G +S VAQLG ++I +VG K+IV ++ KS L F+D +++++S+S++KD F++ GD Y S + W+E+ L L+KD+E V +TE+ + E +A++ D N+ V+QYAPN SRGG +LL DF+LG +V+ + R+R +R Y + G+ +G + A++PV ERVFRRL+ LQ +M N L N A NPR +R H + R + K++ LD +L+RF+ LD Q ++TR IGTT + V+ NLL++ A+
Sbjct: 1473 RPYVVVGTGYVGPHGEDESGRGRLLLYELDYAQYVNHSGSTSGKLPKLRLIFVKDH------RQGAISMVAQLGPYVIAAVGSKLIV--YEFKSEQLIGCAFYDAQMFIVSISIVKD-FVMYGDVYKSAHFLRWKEKQRQLVLLAKDYEPLAVSTTEFNLFEKRLALLAVDVEENLHVMQYAPNDIESRGGQRLLRTGDFHLGVQVSSMFRKRITPAIRSAPVAYVNILGSSEGSISALIPVGERVFRRLFTLQNVMINTLPQNCALNPREFRAMKANSHRHSGRPDAWSKQKWKKSFLDAQVLFRFLQLDYVAQKEITRCIGTTPEVVVHNLLEVQRAT 1803 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15350.1 >prot_C-linearis_contig78.15350.1 ID=prot_C-linearis_contig78.15350.1|Name=mRNA_C-linearis_contig78.15350.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2247bp MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHRback to top mRNA from alignment at C-linearis_contig78:235843..254008- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15350.1 ID=mRNA_C-linearis_contig78.15350.1|Name=mRNA_C-linearis_contig78.15350.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=18166bp|location=Sequence derived from alignment at C-linearis_contig78:235843..254008- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:235843..254008- >mRNA_C-linearis_contig78.15350.1 ID=mRNA_C-linearis_contig78.15350.1|Name=mRNA_C-linearis_contig78.15350.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=13482bp|location=Sequence derived from alignment at C-linearis_contig78:235843..254008- (Chordaria linearis ClinC8C monoicous)back to top |