mRNA_C-linearis_contig78.15339.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 494 bits (1271), Expect = 5.590e-157 Identity = 254/344 (73.84%), Postives = 282/344 (81.98%), Query Frame = 1
Query: 2467 LVYAAAFATTEDACSDAWIEIRNHIKGVGGKCEDYITGHLMKYHKYWCRCFFPKTMTLNMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSVGSNLLSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTILAEN-GDATVCKEYLEGLACGGRVKEGFCADVPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGESIHPRWRSSVAEWSLQNANLATFDGHETFTGGYTEDFNGADADANGDAQDTLTT 3495
L++AAAFA TE+ACSDAW EI H+KG CE+Y+TGHL+++H++W RCFFP TMTLNMTATQRVEGMFSVLKKGR VNRR SLV VK+ELEKRIAG ++ SNLLS+KA SLGR+HIDDHVLKTAEHVF QL VGASTYA EMVAEMRA AAYDT +L + D C + L+GLA G EG+CADVPAEAFEGS PDITMYGTTSL SF ELVR+V I AVVQVQYKYPRT GKVSHIVVVGPKGFQLCTCLKLMRCGL C+H+ AALVTRL RA DF+G SIHPRWR SV EWSL+N L TFDGHETFTGG+TEDF G D D GD+QDTL T
Sbjct: 254 LLHAAAFAATEEACSDAWSEIFRHVKG--SDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHETFTGGFTEDFGGGDFD--GDSQDTLNT 593
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 339 bits (870), Expect = 9.700e-96 Identity = 178/239 (74.48%), Postives = 192/239 (80.33%), Query Frame = 1
Query: 2782 LSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTILAEN-GDATVCKEYLEGLACGGRVKEGFCADVPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGESIHPRWRSSVAEWSLQNANLATFDGHETFTGGYTEDFNGADADANGDAQDTLTT 3495
LS+KA SLGR+HIDDHVLKTAEHVF QL VGASTYA EMVAEMRA AAYDT +L + D C + L+GLA G EG+CADVPAEAFEGS PDITMYGTTSL SF ELVR+V I AVVQVQYKYPRT GKVSHIVVVGPKGFQLCTCLKLMRCGL C+H+ AALVTRL RA DF+G SIHPRWR SV EWSL+N L TFDGHETFTGG+TEDF G D D GD+QDTL T
Sbjct: 703 LSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHETFTGGFTEDFGGGDFD--GDSQDTLNT 939
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 266 bits (680), Expect = 2.240e-73 Identity = 153/338 (45.27%), Postives = 208/338 (61.54%), Query Frame = 1
Query: 2479 AAFATTEDACSDAWIEIRNHIKGVGGKCEDYITGHLMKYHKYWCRCFFPKTMTLNMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSVGSNLLSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTILAENGDATVCKEYLEGLAC-------------GGRVKEG-FCADVPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGESIHPRWRSSVAEWSLQNANLATFDGHE--TFTGGYTEDF 3444
A+ AT+ +A W ++ + +KG CE+YI L + K+W RCF P MTL+MT++QRVEG FSVLKKGR + R S+ V+++ E+ L + S + ++K SLG+ ++++ V K+ E V VGAS YAK E+ AEM A +AYDT+I+ E D+ ++L+ LA G G C VP E FE +APD TM+GTTSL SF LV V I +V+V YK+ KV H+V+VGP GFQLCTCL+L+R GL C H+LAALVTRL R+ +F G+SIHPRWRSSV WS+ L TFDG ++ GG+T D+
Sbjct: 203 ASLATSIEAFDGVWTDVEDLVKGTD--CEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSM---QFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDR---KVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDW 532
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 230 bits (587), Expect = 6.350e-58 Identity = 152/372 (40.86%), Postives = 195/372 (52.42%), Query Frame = 1
Query: 2476 AAAFATTEDACSDAWIEIRNHIKGVGGKCEDYITGHLMKYHKYWCRCFFPKTMTLNMTATQRVEGMFSVLKKGRFVNRRS-------------------SLVWVKSELEKRIA--------------GLSVGSN----------------------LLSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTILAENGDATVCKEYLEGLACGGRVKEG---FCADVPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPI---GAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGESIHPRWR-SSVAEWSLQNANLATFD 3405
AA+FAT+ A W ++ ++G CE+YI G+L K+W RC P TMTL MTA+QRVEG FSV+K G V + S S +WV ++ R+A GL G + LS+KA SL H++D V K E V + GASTYA+ E++AEM A +YDTT+L + ++ K +LE LA +G C VPA+ F+G PD +M+GTT L SF LV V I AVV+V YK KV H+VV+GP GFQLC CL+LMR GL C H+LAALVT L RA +F GE IHPRWR +SV WSL L +FD
Sbjct: 983 AASFATSMKAFERIWNNLKEVVEGT--PCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRMWVSRGVKARVALYHIFILIHCIGMYGLLRGVSHTVEPASFTITSITAVRCLSPCRLSTKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRES---KRFLEDLAAQPSNNDGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRR------KVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFD 1343
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 119 bits (299), Expect = 2.210e-27 Identity = 75/169 (44.38%), Postives = 96/169 (56.80%), Query Frame = 1
Query: 2899 EMVAEMRARAAYDTTILAENGDATVCKEYLEGLACGGRVKEG---FCADVPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAKDFVGESIHPRWRSSVAE-WSLQNANL 3393
E ++EM Y +L E + +LE L ++G C +VP EAF+G D P+ T +G L SF LV +V I A V+V YKY T VSH+VV+GP FQ+CTCL++MR G C H+LAALV R R +F G SIHPRWR AE WSL+ L
Sbjct: 6 EFMSEMLTFLYYCPEVLVEGKGSM---RFLEDLTAHPSNRDGNGDVCCEVPREAFDGKDNPE-TKFGAICLQSFFRLVANVKIDAGVKVSYKYRSPT----VSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALV-RSNRDSEFAGASIHPRWRPRSAEPWSLERVAL 165
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE) HSP 1 Score: 123 bits (308), Expect = 9.470e-25 Identity = 59/167 (35.33%), Postives = 96/167 (57.49%), Query Frame = 3
Query: 1926 GRQEVRNMVANVQRELFCLPTDALDLVSELKDTAGCYVKYDTDELRRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMRFMLFVGVDSENRAVVFAQGFFSDQSSDTHMWALEQYCKICGGH-PEVIITDADGGMTLAVEQYLPGTVHLHCLWHVMKNVRKDC 2423
G+++V N +A ++ L+ P DA + ++ L+ G +V+ + D + RL++VFW+T QQ ++G + D T NRYG + VGVD ENR+ + AQ + ++T W L + G P+V +TD + MT A+ + T+HL+CLWH+ KNV K+C
Sbjct: 12 GKKKVYNAMAAIKDHLYSSPEDAANFLATLQSEPGMFVEREFDSIGRLENVFWATVDQQNKIARYGACIQMDTTVFMNRYGCPLLFIVGVDDENRSCILAQCLLRSECTETFKWILTSWDGASGDRRPKVFLTDGEKAMTAALRGWKT-TLHLYCLWHIFKNVLKNC 177
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.050e-24 Identity = 97/331 (29.31%), Postives = 156/331 (47.13%), Query Frame = 1
Query: 2437 ESRQIASSSYLVYAAAFATTEDACSDAWIEIRNHIKGVGGKCEDYITGHLMKYHKYWCRCFFPKTMTLNMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSVGSNLLSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTIL---AENGDAT-------VCKEYLEGLACGGRVKEGFCADVPAEAF-----EGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLG-RAKD------FVGESIHPRWRSSV 3363
+ + A L +AA+A T +A + +++ +KG KCE+Y+ + K+ C P +T+ M ATQR EGMF V K+ V+++ SL + +L+ + V + ++++ H+ + ++L+ VGAS Y + E AE+ +YD ++ A + D V + LE + + E D E E D +++ TSL + ++L+ ++P+ V+YK G H+VV GP GF LC+CLKL+R GL C H A LV LG R K F G S+H RWR S+
Sbjct: 86 DKEERAKMLRLFRSAAYAATPEAFARYRVDLEKIVKGK--KCEEYMDALIQDKTKWAFSCR-PTLLTMGMVATQRTEGMFGVAKRSG-VHKKLSLCGLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEKDCMRGPEAESTEDSSVWARTSLEALLDLIGELPVHVAAAVRYKLTPARPG----HVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLVRFLGCRFKGILLDHRFDGNSLHARWRQSL 408
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: UPI001C262D31 (protein FAR1-RELATED SEQUENCE 5-like n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C262D31) HSP 1 Score: 108 bits (271), Expect = 1.620e-21 Identity = 56/173 (32.37%), Postives = 99/173 (57.23%), Query Frame = 3
Query: 1908 LQLGGPG-----RQEVRNMVANVQRELFCLPTDALD--LVSELKDTAGCYVKYDTDELRRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMRFMLFVGVDSENRAVVFAQGFFSDQSSDTHMWALEQYCKICGGH-PEVIITDADGGMTLAVEQYLPGTVHLHCLWHVM 2402
++ GGP +++RN+ +++ E + + L SE + + + Y+TD R K FW+ + + + +G +V+ D+T TN+YGM F FVGV+ ++ ++F GF SD+ +++++W L ++ + P+ IITD D MT A+ Q LP TVH +CLWH++
Sbjct: 166 IEHGGPESVGCTERDIRNLERDMRDEQKGINAETLVEFFTSEKEKNSSFFFDYETDSDNRFKRCFWADHKSRSAYNVFGDVVVFDSTYNTNKYGMIFTPFVGVNHHHQTIMFGCGFLSDEKTESYLWLLNKFMEAMPTRAPKAIITDQDPAMTKALAQVLPKTVHRYCLWHIL 338
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A2I4FHD7_JUGRE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4FHD7_JUGRE) HSP 1 Score: 109 bits (272), Expect = 1.740e-21 Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 3
Query: 1893 DRVKPLQLGGPGRQEVRNMVANVQRELFCLPTDALDLVSELKDTAGCYVKYDTDELRRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMRFMLFVGVDSENRAVVFAQGFFSDQSSDTHMWALEQYCKICGGH-PEVIITDADGGMTLAVEQYLPGTVHLHCLWHVMKNV 2411
D+ + L+LG G +R +Q + G Y D D+ RLK+VFW+ G+ + + +G +V D T LTNRYGM F FVGV+ +++ F G S +++DT W E + K G P IITD D M A+ P T H +CLWH+M+ +
Sbjct: 30 DKARVLRLGKGGADALRQYFERMQYK-----------------NDGFYSSMDIDDEGRLKNVFWADGRSRAAYGYFGDVVTFDTTYLTNRYGMSFAPFVGVNHHGQSIFFGAGLISSENTDTFFWLFETWLKCIDGRAPNAIITDQDRAMKNAIAIVFPNTRHKYCLWHIMRKL 186
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.680e-21 Identity = 94/270 (34.81%), Postives = 131/270 (48.52%), Query Frame = 1
Query: 2605 WCRCFFPKTMTLNMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSV----GSN---LLSSKAFSLGRKHIDDHVLKTAEHVFDQLRLVGASTYAKAEMVAEMRARAAYDTTILAENGDATVCKEYLEGLACG-GRVKEGFCAD---VPAEAFEGSDAPDITMYGTTSLSSFVELVRDVPIGAVVQVQYKYPRTTGGGKVSHIVVVGPKGFQLCTCLKLMRCGLHCNHMLAALVTRLGRAK-DFVGESIHPRWRSSVAEWSL 3378
W CF P +TL +T+TQRVE M +VLK ++R SSL + + LE A L + G+N L+ +S G + +LK E + L+ +GAS YA +E A Y T LA+ DA L L+ G G V+ D +P +G D D TMY TSL +F L+ I V ++ + R+ G +H+VV GP GF LC+CL L+ G C H LA L + +F +HPRWR WS+
Sbjct: 208 WAFCFNPGALTLGITSTQRVERMNAVLK--HLISRYSSLSRLDAALETVEAKLHLESERGNNDKVLMKHPTWSSG---VLGTMLKFFEPIGQALKQLGASNYALDVTKSEAVAAMTYATERLAQGSDAVTT--LLPTLSRGEGGVRFATAPDSRDLPNIDDDGGD--DATMYARTSLPAFCALLHGQDITEVYKISF---RSGGADGRAHLVVTGPGGFYLCSCLHLLHTGRFCRHFLAVLADFFAKGGWEFDPACLHPRWREDERPWSM 465 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15339.1 >prot_C-linearis_contig78.15339.1 ID=prot_C-linearis_contig78.15339.1|Name=mRNA_C-linearis_contig78.15339.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=354bp MYRLITDRVKPLQLGGPGRQEVRNMVANVQRELFCLPTDALDLVSELKDTback to top mRNA from alignment at C-linearis_contig78:136766..143119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15339.1 ID=mRNA_C-linearis_contig78.15339.1|Name=mRNA_C-linearis_contig78.15339.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6354bp|location=Sequence derived from alignment at C-linearis_contig78:136766..143119- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:136766..143119- >mRNA_C-linearis_contig78.15339.1 ID=mRNA_C-linearis_contig78.15339.1|Name=mRNA_C-linearis_contig78.15339.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2124bp|location=Sequence derived from alignment at C-linearis_contig78:136766..143119- (Chordaria linearis ClinC8C monoicous)back to top |