mRNA_C-linearis_contig77.15332.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig77.15332.1
Unique NamemRNA_C-linearis_contig77.15332.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig77.15332.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.680e-8
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:  247 QICCPTKKVCEIPLDDDVTACGDPHMTGF 333
            +ICCP KKVCE+PL  D TACGDPHMTGF
Sbjct:   35 EICCPVKKVCELPLPTDPTACGDPHMTGF 63
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig77.15332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRS2_9PHAE7.680e-879.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig77contigC-linearis_contig77:861241..864459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size337
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig77.15332.1prot_C-linearis_contig77.15332.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig77 861241..864457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.7466753-CDS-C-linearis_contig77:861240..8612901622930476.7466753-CDS-C-linearis_contig77:861240..861290Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 861241..861290 +
1690881089.471584-CDS-C-linearis_contig77:861240..8612901690881089.471584-CDS-C-linearis_contig77:861240..861290Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 861241..861290 +
1622930476.7643127-CDS-C-linearis_contig77:861746..8618221622930476.7643127-CDS-C-linearis_contig77:861746..861822Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 861747..861822 +
1690881089.4868772-CDS-C-linearis_contig77:861746..8618221690881089.4868772-CDS-C-linearis_contig77:861746..861822Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 861747..861822 +
1622930476.7800555-CDS-C-linearis_contig77:862451..8625361622930476.7800555-CDS-C-linearis_contig77:862451..862536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 862452..862536 +
1690881089.5016766-CDS-C-linearis_contig77:862451..8625361690881089.5016766-CDS-C-linearis_contig77:862451..862536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 862452..862536 +
1622930476.7965195-CDS-C-linearis_contig77:862845..8629441622930476.7965195-CDS-C-linearis_contig77:862845..862944Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 862846..862944 +
1690881089.5139225-CDS-C-linearis_contig77:862845..8629441690881089.5139225-CDS-C-linearis_contig77:862845..862944Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 862846..862944 +
1622930476.8093576-CDS-C-linearis_contig77:864434..8644571622930476.8093576-CDS-C-linearis_contig77:864434..864457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 864435..864457 +
1690881089.526666-CDS-C-linearis_contig77:864434..8644571690881089.526666-CDS-C-linearis_contig77:864434..864457Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 864435..864457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig77.15332.1

>prot_C-linearis_contig77.15332.1 ID=prot_C-linearis_contig77.15332.1|Name=mRNA_C-linearis_contig77.15332.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
STGISGLSTTLNSGIEVCCDPGCTQCGGRMCSSSSPGLSVEDCCTSRIVD
SGLVCGQDAGTVEAPCMIATECLIDTDCLLDGQICCPTKKVCEIPLDDDV
TACGDPHMTGF
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mRNA from alignment at C-linearis_contig77:861241..864459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig77.15332.1 ID=mRNA_C-linearis_contig77.15332.1|Name=mRNA_C-linearis_contig77.15332.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3219bp|location=Sequence derived from alignment at C-linearis_contig77:861241..864459+ (Chordaria linearis ClinC8C monoicous)
TCCACTGGGATCTCCGGCCTATCTACGACGCTGAATTCCGGAATCGAAGT
GTGAGTGGCAATGGCGACGACAGTTAACGTTGCTCAAAGGACGACCTGCG
ATTTGACCGCGCGTGTTCGATCGGGGAATTTTGCGCCCGAAATACTCAGC
AAAACAGATTCGTCTGCGACAGACAGACAGTCTCGTGAAATTGTCACAGC
TTGTTGTGCACGAAACAGTTTTCGCGACTCTCTGTGCACGGAAAAGATTT
TCAGTACCGAGATCACTACTATTATTTCGTTTGCCCTCGCCTTCACTACC
ATAACAAATTACGGAAGCTTCCATAACTTCTATGGACGCTTCCTCCATGA
TTTGTCATGATAGTGTGGGAGACAGGAAGGTTGGGTTTCAACATTGCTCA
GGAAAGTGGGTGAATACTTATCAACCTCTCGTTGTCTGGCAGCATGTGGC
GCACGTTCATTCATTCATTGGTATCGCCTTCCGTTTACTGTTTCTGAGCG
ATCTAGGTGCTGCGACCCGGGCTGTACCCAATGCGGCGGGAGAATGTGCA
GCTCATCTTCCCCAGGGCTCAGCGTGGAAGACGTAAGTTTTTCAAGTCTC
ACTTGCAGCTTTTCTGTTGTTTGTTTGCCCTCCGAATTAAACAAATCCGA
TGGCCTTTCCGGTCTTCTTGTTGAGAAGAAGCCGTGACAAAACAAAAAAC
ACGACGAGAGAACGGTCAGCTCACGAACCTTTCAAGGATATATGGTTAAA
CTTGTATAGTCTATGTCCTGCTGTGAAGCAAGAAAAACTTCTTGGCACGT
TTCATATGTAGTCATGCTCGTATCTTGCTCTGTGTTGTATAGAACACGGC
ACTGCTTCATCACTGCAACACCCCGAAGCATCTAGCTACAAAAATACGCA
GAGGGAGCCGCATATATATGTTGACACGACTGGCATGCCGAAAACCCCTA
ACTACAACATATTAAACCACAACACACGAAGTAATAAGCGGATTGCGGAT
TTTGTGCCTGCACGTCTGGGAGGTGAGGGAAGGGCTAGTGCGTATACAAC
AGCAGCAGCCCCCCCGGAACGAGTTGTTGTTCGCAGGTCGGACGTATACC
GCTGATGACGTTTTGTAGAATAATTATTGAAAAGGACAAAAAAAAAGGAC
GATGCTCTTGGTTTGCCGGTTGTTGTTTTTGGCTCTCGTCGTCTCGCGCC
TCGGAAAACAGTGCTGCACAAGCCGGATCGTCGACTCGGGCCTGGTGTGC
GGCCAGGACGCCGGCACTGTGGAGGCCCCCTGCATGATCGCCACCGGTGA
GTGACTGCCTCATTTTCGAAAGCCCAGTGTGTACCATGATGAGCTCTTTT
TTTTTTCATGGCGGATCGGTCAATGCATCCATTCTCCCTCAGTCTTCACT
TATTATTTCTGTTTCCCGCGGCCCCGGCTGCATGTATCAATGTATGTGTG
TTGCGATGATAGCGCAACGATGAAAAGATACATCGGCACTTGTCTTGAAG
AGTTATTTTATTGTTGTTCCTATCCTCTGATTGGCATTTAAACGCAATGT
ACATACTTCGTACATACGTGCGCGATGCCTCGTCCCTTGATCGTGCGTGC
GACAGAATGCCTTATTGACACCGACTGCCTCCTCGACGGTCAGATTTGCT
GCCCCACCAAGAAGGTCTGCGAGATTCCTCTCGACGACGACGTCACTGCC
TGCGGTAAGGGTTCCGGGCTGGCGCTCTCGGGTGAATCTATGTTGTCCCA
ACGGCGATATCCTTTCACTAACAACGTACGCGCGTTCTGCGAAGCTTGCT
TCCAATAATAGAGTTTCGGCTCGCTCAATCAAGCGCATGCACAGGATATA
TGAAGTACGTACTCTGCATCGTAGCCATTTCTCATCGCGAACGGTTCATC
TGCCGTGGCCATAGCCGCCGAGCCCCAGCGCGCAGAATATATGCTCTGGC
AGGAGAATGCTCCTTACAAGTTTGAGCGCGGTCGGGGGGGCGTACGGCTG
GGCGGGAAAGGGGACTGTTATAAGATCTCCAATCAGCCAGGTGATCAGTT
AACCTTTTACCACATGGCTGAGTGGACAAATCCATATCATTCATGTGTTA
CACATGAATGATATGGAACACATGAATGATATGGATTTGTCCACTCAGCC
ATGTGGTAAAAGGTTAACTGATCACCTGGCTGATTGGATGAATGATATGG
ATTTGTCCACTCAGCCATGTGGTAAAAGGTTAACTGATCACCTGGCTGAT
TGGAGATCTTATAACACTCTCCAGCACTCAAACCTAGCGGTAAGTGATCC
GGAACGTCTCAATAAACGGAAGGGATGCTTTTTCCGACTAGGATTTTACA
GTATCAAAGTGCGAGAGTGTTTAATCCATTCACGCACAAGTTCTTTTTCT
TTTTTTCCGAAGAGAAAAGAAAGTGCACAGGCCGAGATTCGAACTCTCGG
CGTGTCCTAGACGACGCCATAGTGTTATGGATTTGTCCACTCAACCATGT
TGGTAAAAGGTTGACTGATCACCTGGCTGATTGGAGATCTTATAACACTC
TCCAGCACTGAAACCTAGCGGTAAGTGATCCGGAACGTCTCAATAAACGG
AAGGGATGCTTTTTCCGACTAGGATTTTACAGTATCAAAGAGCGAGGAGA
GTGTTTAATCCATTCACGCACAAGTTCTTTTTCTTTTTTCCGAAGAGAAA
ATAAAGTGCACAGGCCGAGATTCGAACTCTCGGCGTGTCCTAGACGACGC
CATAATGTTATGGATTTGTCCTCTCAGCCATGTGGTAAAAGGTTAACCGA
TCACCTGGCTGATTGGAGATCTTGTAACACTCTCACACGCCGAGAGTTCG
AATTTCGGCCTGTGCACTTTATTTTCTCTTCGGAAAAAAGAAAAAGAACT
TGTGCGTGAATGGATTAAACACTCTCGCACTTTGATACTGTAAAATCCTA
GTCGGAAAAAGCATCCCTTCCGTTTATTGAGACGTTCCGGATCACTTATC
GCTAGGTTTCAGTGCTGGAGAGTGTTATAAGATCTCCAATCAGCCAGGTG
ATTGGTTAACCTTTTACCACATGGCTGAGTGGACAAATCCATAACAGGAC
CGAGGGTAAGCATTTTTTTTTTTTTCGTCCCTCTCCTTCGAATACTCACT
TTTTGACATCCTTTCTTTGGACACACAACGCTGTTCGAAAAAAGGTGACC
CCCACATGACCGGATTCCG
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Coding sequence (CDS) from alignment at C-linearis_contig77:861241..864459+

>mRNA_C-linearis_contig77.15332.1 ID=mRNA_C-linearis_contig77.15332.1|Name=mRNA_C-linearis_contig77.15332.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig77:861241..864459+ (Chordaria linearis ClinC8C monoicous)
TCCACTGGGATCTCCGGCCTATCTACGACGCTGAATTCCGGAATCGAAGT
TCCACTGGGATCTCCGGCCTATCTACGACGCTGAATTCCGGAATCGAAGT
GTGCTGCGACCCGGGCTGTACCCAATGCGGCGGGAGAATGTGCAGCTCAT
CTTCCCCAGGGCTCAGCGTGGAAGACGTGCTGCGACCCGGGCTGTACCCA
ATGCGGCGGGAGAATGTGCAGCTCATCTTCCCCAGGGCTCAGCGTGGAAG
ACTGCTGCACAAGCCGGATCGTCGACTCGGGCCTGGTGTGCGGCCAGGAC
GCCGGCACTGTGGAGGCCCCCTGCATGATCGCCACCGTGCTGCACAAGCC
GGATCGTCGACTCGGGCCTGGTGTGCGGCCAGGACGCCGGCACTGTGGAG
GCCCCCTGCATGATCGCCACCGAATGCCTTATTGACACCGACTGCCTCCT
CGACGGTCAGATTTGCTGCCCCACCAAGAAGGTCTGCGAGATTCCTCTCG
ACGACGACGTCACTGCCTGCGAATGCCTTATTGACACCGACTGCCTCCTC
GACGGTCAGATTTGCTGCCCCACCAAGAAGGTCTGCGAGATTCCTCTCGA
CGACGACGTCACTGCCTGCGGTGACCCCCACATGACCGGATTCGTGACCC
CCACATGACCGGATTC
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