mRNA_C-linearis_contig76.15246.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15246.1
Unique NamemRNA_C-linearis_contig76.15246.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig76.15246.1 vs. uniprot
Match: D7FQQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ3_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 9.970e-42
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    4 TSFSDLFKLGKEVLKTETFVLHESETRGVNEGRKCLVKCLFVFGLTKAERAQVGDDVRTFRRAKHPALLALQDVISEPEVR 246
            +SFSDLFKLGKEVLKTETFVLHE +TRG +EGRKCLVKCLFVFGLTKAERAQVG+DVRTFRRAKHPA+LALQDVI+EPE R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRG-DEGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEER 87
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BLAST of mRNA_C-linearis_contig76.15246.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.810e-37
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    4 TSFSDLFKLGKEVLKTETFVLHESETRGVNEGRKCLVKCLFVFGLTKAERAQVGDDVRTFRRAKHPALLALQDVISEPEVR 246
            +SFSDLFKLGKEVLKTETFVLHE +TRG +EGRKCLVKCLFVFGLTKAERAQVG+DVRTFRRAKHPA+LALQDVI+EPE R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRG-DEGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEER 87
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQQ3_ECTSI9.970e-4288.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V0_9PHAE2.810e-3788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:924202..925193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine-threonine/tyrosine-protein kinase catalytic domain
Ec32 orthologEc-01_000110.1
Exons2
Model size401
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15246.1prot_C-linearis_contig76.15246.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 924202..925053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.539936-CDS-C-linearis_contig76:924201..9242981622930459.539936-CDS-C-linearis_contig76:924201..924298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 924202..924298 +
1690881080.8776865-CDS-C-linearis_contig76:924201..9242981690881080.8776865-CDS-C-linearis_contig76:924201..924298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 924202..924298 +
1622930459.5531812-CDS-C-linearis_contig76:924889..9250531622930459.5531812-CDS-C-linearis_contig76:924889..925053Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 924890..925053 +
1690881080.8914373-CDS-C-linearis_contig76:924889..9250531690881080.8914373-CDS-C-linearis_contig76:924889..925053Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 924890..925053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.5662112-UTR-C-linearis_contig76:925053..9251931622930459.5662112-UTR-C-linearis_contig76:925053..925193Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 925054..925193 +
1690881080.900924-UTR-C-linearis_contig76:925053..9251931690881080.900924-UTR-C-linearis_contig76:925053..925193Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 925054..925193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15246.1

>prot_C-linearis_contig76.15246.1 ID=prot_C-linearis_contig76.15246.1|Name=mRNA_C-linearis_contig76.15246.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MTSFSDLFKLGKEVLKTETFVLHESETRGVNEGRKCLVKCLFVFGLTKAE
RAQVGDDVRTFRRAKHPALLALQDVISEPEVRCEVG*
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mRNA from alignment at C-linearis_contig76:924202..925193+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15246.1 ID=mRNA_C-linearis_contig76.15246.1|Name=mRNA_C-linearis_contig76.15246.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=992bp|location=Sequence derived from alignment at C-linearis_contig76:924202..925193+ (Chordaria linearis ClinC8C monoicous)
ATGACGAGCTTTAGTGACCTTTTCAAGCTGGGGAAGGAGGTCCTGAAAAC
GGAGACGTTTGTGCTTCATGAGTCAGAGACAAGAGGAGTCAATGAAGGTG
TGTGCGTTGCAGATCAGGTAGCTGGCGAGGACGCATTTTCAATCGATTTT
GCGTTCTGCGTGTTTTTTTTGTTTAGTCTTCCTGCTGTGTACCACAAGAC
AAAAGTGCATGATCGGAAGGGTTGGGCCAGCGGCGCGTGCGCGCGTATTA
TCACCTTCTCTCCACCACTCTCACGATACCGCGTACCGCGCATTTCTCCA
GCCAGCCCGCCTCGAATATTCAAGCGTCTCGCTCGTTTGAAGAGCCGGCA
CACACAGCCTTTTGCCGCCCCAAAGAGACGGCTGAAACTCTCTCGCGTTA
AAAAATGCCAGGCAAGCACCGCAGAAGGTGGGTGGAGGCCTCAGGGAGAG
GGGCCTTCTGTGTGACCACGGTTGAGATGTCCAGGCAAGATGCCCCGCGT
GCGTGGCAAGGCGCCCCTGCGAACTCTGGAATTTAATACAAAAGACGAAA
AAAATAAAATAAAAAATAAAAAATGCTTCTTCTTCATTTCTTTACATATT
ACAACAGCAGTTTCTTTTTATTTAGGCCACGTGTTGTTGGTGGCTCTAAA
TCGCGGCGTTCTCTGTTGGTCACTTGCCGCGGTGACAGGACGAAAATGCC
TCGTGAAGTGCTTGTTCGTGTTCGGGCTGACCAAGGCCGAGAGAGCGCAG
GTAGGCGACGATGTGCGCACCTTCCGGAGGGCCAAGCACCCGGCGTTGTT
GGCGCTGCAGGACGTCATATCCGAACCAGAGGTGAGGTGTGAGGTGGGAT
AACAAATGTTTTTGGTTCGGCGAATTCAAAATTAAAACTAACAGCAGTTG
ACATTTTATTGTTAGCACCAGGATCCGGTCGCCCCGGTGGACTAGTGGTT
TAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATTCC
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Coding sequence (CDS) from alignment at C-linearis_contig76:924202..925193+

>mRNA_C-linearis_contig76.15246.1 ID=mRNA_C-linearis_contig76.15246.1|Name=mRNA_C-linearis_contig76.15246.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig76:924202..925193+ (Chordaria linearis ClinC8C monoicous)
ATGACGAGCTTTAGTGACCTTTTCAAGCTGGGGAAGGAGGTCCTGAAAAC
GGAGACGTTTGTGCTTCATGAGTCAGAGACAAGAGGAGTCAATGAAGATG
ACGAGCTTTAGTGACCTTTTCAAGCTGGGGAAGGAGGTCCTGAAAACGGA
GACGTTTGTGCTTCATGAGTCAGAGACAAGAGGAGTCAATGAAGGACGAA
AATGCCTCGTGAAGTGCTTGTTCGTGTTCGGGCTGACCAAGGCCGAGAGA
GCGCAGGTAGGCGACGATGTGCGCACCTTCCGGAGGGCCAAGCACCCGGC
GTTGTTGGCGCTGCAGGACGTCATATCCGAACCAGAGGTGAGGTGTGAGG
TGGGATAAGACGAAAATGCCTCGTGAAGTGCTTGTTCGTGTTCGGGCTGA
CCAAGGCCGAGAGAGCGCAGGTAGGCGACGATGTGCGCACCTTCCGGAGG
GCCAAGCACCCGGCGTTGTTGGCGCTGCAGGACGTCATATCCGAACCAGA
GGTGAGGTGTGAGGTGGGATAA
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