mRNA_C-linearis_contig76.15243.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15243.1 vs. uniprot
Match: D7FQQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ7_ECTSI) HSP 1 Score: 468 bits (1205), Expect = 3.300e-163 Identity = 265/341 (77.71%), Postives = 285/341 (83.58%), Query Frame = 1
Query: 1 MAPAGQRFNAVMEVLVHELLQERITRSRVPSSVSIASLRDSRGRRRQVGHQQGAITLDLPRSMGAAFSKKSVGDIAAAGAGTLSDISAGTIPKGNTHESALALTAGGGSSSELFPG---------ENAAEPKERCKTSPLQGKMGVSRSALGIRAEGGREASRKHHTSSTKRGHGHSSPPKGNRASNAGGGVLNKFQFSKDAIRRQQMSQESWIPDDLRMKMMRRSMAVIKENVHESVAQDSLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLDYRPTWEMELQSMRKQREQLAREKEREYWDPLRKAS 996
MAPAGQR AVMEVLV EL QERI RSR PSSVSIASLRDS+GRRRQVG++ + +L+LPRS+GA SK SVGD+AA GT SDISAG+IPK + H+SAL A GGS S+ PG E A + KERCK SPLQGKMG SR LG R EGGRE RKHHTSS KRGHGHSSP KGNRAS+AGG VLNKFQFSKDAIRRQQMS ESWIPDDLRMKM+RR MAVIKENV ESVA S+VRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPL YRPTW+ME+ MRK+REQLAREKEREYWDPLRKA+
Sbjct: 1 MAPAGQRLTAVMEVLVRELAQERIVRSRAPSSVSIASLRDSKGRRRQVGNRHMSTSLELPRSLGANLSK-SVGDVAATDTGTFSDISAGSIPKTSGHQSAL--KAEGGSGSDSPPGGRGGGSTMTEAAGDSKERCKMSPLQGKMGASRKNLGARTEGGREVPRKHHTSSAKRGHGHSSPLKGNRASSAGG-VLNKFQFSKDAIRRQQMSHESWIPDDLRMKMVRRGMAVIKENVFESVAHGSVVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWDMEVSRMRKKREQLAREKEREYWDPLRKAT 337
BLAST of mRNA_C-linearis_contig76.15243.1 vs. uniprot
Match: A0A836CGB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB7_9STRA) HSP 1 Score: 126 bits (317), Expect = 3.060e-29 Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 538 GGGVLNKFQFSKDAIRRQQMSQESWIPDDLRMKMMRRSMAVIKENVHESVAQDSLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK-------------------------------------VCAFCSQLFHDPLDYRPTWEMELQSMRKQREQLAREKEREYWDPLR 987
GG K +R+ Q+SQESWIP DLRMKM+RRS++ + ++V E+ A + + K+ +++R+ LEI K QE+FG + RPCALCEQ FS VNLVLAVP+K VCAFCSQ F +P YRPT EM+ +++ + ++E+ YWDPLR
Sbjct: 223 GGEARAKPMVKASDVRKPQLSQESWIPIDLRMKMLRRSISAVADSVSETAAWEKVRTKQAAKNARTSLEIAKEQERFGRECPRPCALCEQVFSSVNLVLAVPYKAIMDVREHWHEKAPHRLGPPKASHNMKRPPQCYNEVRVCAFCSQQFSEPATYRPTQEMKAAALKDAEAKEEADREKAYWDPLR 409
BLAST of mRNA_C-linearis_contig76.15243.1 vs. uniprot
Match: A0A7S2LA26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA26_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.820e-7 Identity = 44/146 (30.14%), Postives = 67/146 (45.89%), Query Frame = 1
Query: 598 SQESWIPDDLRMKMMRRSMAVIKENVHESVAQDSLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK--------------------------------------VCAFCSQLFHDPLD-YRPTWEMEL 918
S+ESWIP+DLR +M++R +V K N S +E +R LE +++EK+G + +R C LC++ NLVLAV K VC FC+QLF + + YRP+W+ ++
Sbjct: 254 SRESWIPEDLRRRMLKREFSVAKMNYETREKCQSSNLRELQRCKSDALEKSRSKEKYGIEIKRNCGLCDRPHLSENLVLAVTLKACLDIRDSWGCKYDPEGSSRVRVNPNLRKAPACYNETRVCVFCAQLFDNQQEKYRPSWQAKV 399 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15243.1 >prot_C-linearis_contig76.15243.1 ID=prot_C-linearis_contig76.15243.1|Name=mRNA_C-linearis_contig76.15243.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=332bp MAPAGQRFNAVMEVLVHELLQERITRSRVPSSVSIASLRDSRGRRRQVGHback to top mRNA from alignment at C-linearis_contig76:910020..913613- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15243.1 ID=mRNA_C-linearis_contig76.15243.1|Name=mRNA_C-linearis_contig76.15243.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3594bp|location=Sequence derived from alignment at C-linearis_contig76:910020..913613- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:910020..913613- >mRNA_C-linearis_contig76.15243.1 ID=mRNA_C-linearis_contig76.15243.1|Name=mRNA_C-linearis_contig76.15243.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at C-linearis_contig76:910020..913613- (Chordaria linearis ClinC8C monoicous)back to top |