mRNA_C-linearis_contig76.15232.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig76.15232.1
Unique NamemRNA_C-linearis_contig76.15232.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig76contigC-linearis_contig76:821394..822029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig76.15232.1prot_C-linearis_contig76.15232.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig76 821412..821738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.20914-UTR-C-linearis_contig76:821393..8214111622930440.20914-UTR-C-linearis_contig76:821393..821411Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 821394..821411 +
1690881070.4914806-UTR-C-linearis_contig76:821393..8214111690881070.4914806-UTR-C-linearis_contig76:821393..821411Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 821394..821411 +
1622930440.2434094-UTR-C-linearis_contig76:821738..8220291622930440.2434094-UTR-C-linearis_contig76:821738..822029Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 821739..822029 +
1690881070.5115235-UTR-C-linearis_contig76:821738..8220291690881070.5115235-UTR-C-linearis_contig76:821738..822029Chordaria linearis ClinC8C monoicousUTRC-linearis_contig76 821739..822029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930440.2271683-CDS-C-linearis_contig76:821411..8217381622930440.2271683-CDS-C-linearis_contig76:821411..821738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 821412..821738 +
1690881070.500907-CDS-C-linearis_contig76:821411..8217381690881070.500907-CDS-C-linearis_contig76:821411..821738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig76 821412..821738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig76.15232.1

>prot_C-linearis_contig76.15232.1 ID=prot_C-linearis_contig76.15232.1|Name=mRNA_C-linearis_contig76.15232.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MLTNFFNVFFPVRSKKKKEEESPWHIALHCCNIPPSRTCLPNTPNLDISG
VLVLSFRGHKPRALPGYGRTLLLRPFFRRRLTESVGSPHASNTRRLLVRT
EKIIDSGV*
back to top

mRNA from alignment at C-linearis_contig76:821394..822029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig76.15232.1 ID=mRNA_C-linearis_contig76.15232.1|Name=mRNA_C-linearis_contig76.15232.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at C-linearis_contig76:821394..822029+ (Chordaria linearis ClinC8C monoicous)
CTGCTGTAGCACCCTTACATGTTAACAAATTTTTTTAACGTGTTCTTTCC
CGTTCGCAGCAAAAAGAAAAAAGAGGAAGAGTCGCCCTGGCACATCGCCC
TGCACTGCTGTAACATACCACCTTCGCGGACGTGTTTGCCCAACACGCCC
AACCTCGACATTTCGGGTGTGCTTGTGCTTAGTTTCAGAGGTCACAAGCC
GCGTGCTTTGCCTGGTTATGGGCGTACACTTCTTTTGCGGCCCTTCTTTC
GGCGAAGGCTAACAGAGTCGGTGGGATCGCCGCACGCATCAAACACACGG
CGTTTGTTGGTTCGCACGGAGAAAATAATAGATTCCGGCGTTTAGTGGTT
CGTTTCTAGGGCACGTGCACTCCGCGAAGGACGCCACTAATCCAAAATCA
GACTGAGTTGTTTCGGAAAACATCAACAGCAGGTAGTAGACTGTTTACCA
ACACGGCACTTGTCGGTCAAAATGAATCAATGACGACACCATTTCTCTCG
CCAGAGAGACAAGTATACGGTATATTACAGCCAATCCGCCCGCTGTGCGT
CTTTTGTGTCATGTTCGAACGAGCAACCGGTACTTGTCGACAACAACCTT
CTTTGTTCCGGTAGCCCCCGCCCCCCCCTTCGCCCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig76:821394..822029+

>mRNA_C-linearis_contig76.15232.1 ID=mRNA_C-linearis_contig76.15232.1|Name=mRNA_C-linearis_contig76.15232.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig76:821394..822029+ (Chordaria linearis ClinC8C monoicous)
ATGTTAACAAATTTTTTTAACGTGTTCTTTCCCGTTCGCAGCAAAAAGAA
AAAAGAGGAAGAGTCGCCCTGGCACATCGCCCTGCACTGCTGTAACATAC
CACCTTCGCGGACGTGTTTGCCCAACACGCCCAACCTCGACATTTCGGGT
GTGCTTGTGCTTAGTTTCAGAGGTCACAAGCCGCGTGCTTTGCCTGGTTA
TGGGCGTACACTTCTTTTGCGGCCCTTCTTTCGGCGAAGGCTAACAGAGT
CGGTGGGATCGCCGCACGCATCAAACACACGGCGTTTGTTGGTTCGCACG
GAGAAAATAATAGATTCCGGCGTTTAGATGTTAACAAATTTTTTTAACGT
GTTCTTTCCCGTTCGCAGCAAAAAGAAAAAAGAGGAAGAGTCGCCCTGGC
ACATCGCCCTGCACTGCTGTAACATACCACCTTCGCGGACGTGTTTGCCC
AACACGCCCAACCTCGACATTTCGGGTGTGCTTGTGCTTAGTTTCAGAGG
TCACAAGCCGCGTGCTTTGCCTGGTTATGGGCGTACACTTCTTTTGCGGC
CCTTCTTTCGGCGAAGGCTAACAGAGTCGGTGGGATCGCCGCACGCATCA
AACACACGGCGTTTGTTGGTTCGCACGGAGAAAATAATAGATTCCGGCGT
TTAG
back to top