mRNA_C-linearis_contig74.15033.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 880 bits (2273), Expect = 5.750e-312 Identity = 420/524 (80.15%), Postives = 474/524 (90.46%), Query Frame = 2
Query: 239 SPTPSPHLNEHASPTMMYVPGMMPNTTHNSTDTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEEL-LVEPACFDETDEEALADGDC 1807
+P+P+ + A+PTM+ +P T N TDTPSPN PIPKPEC+S + VS+RYSATTGRLYLEAGV GERGGCVT++QIWEARGGGT TGAKAPL+A+DP++G S+ ITGTWLLEEDLYVEDG+TLKVWGN SGGY +ELRLKS+P +++GGNGTY+NLRAHGGSLDFE+TKVFGWDT NN YDMDETDGRSYISAVSEIV+DP + C GNAKNTMGEARMDIV SEMGYMGFHDSESYGLTWKVRGFCKDKSNPE+FDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNT+HSNSGY GYDPHDDSD+LTIHDNVVYDNNWHGIIASKRCNNVSIQ NIVYGGN+TSAGIFLHRSSDYA+VK+N+CY NGDAGMAMLESSNA+ISGN+FEGNKYGIRMSVGC +N V NNT +NTS+YA+YTY+GSDP +VQ TGRSQDNIFDSNTV+GGPQAIK+KESDG+ +TNNVF PGL+E+SN+T+NVVTGN+GLE A E+ LVEPACF ETDE +LA+ C
Sbjct: 72 TPSPAAMIAFTAAPTMLMMPAGN-GTAFNGTDTPSPNTPIPKPECNSTQAVSIRYSATTGRLYLEAGVEGERGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGY-GYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGLVEFSNTTENVVTGNVGLEDATEVELVEPACFAETDEASLAEYSC 593
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 617 bits (1591), Expect = 4.000e-210 Identity = 315/486 (64.81%), Postives = 370/486 (76.13%), Query Frame = 2
Query: 332 DTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVF----SNPGLIEWSNSTKNVVTGNIGL-EGAEELLV-EPACFD 1771
DT SPN+PI KP+CDS+ VS+RY+ TT RLYLE+ RGGC T+ QIWE+R G KAPL+A+DP +G VSE TGTWLL E+LYVEDG+TLKV+G GG +ELRL S+ TY+NLRAHGGSLDF TKVF WDT N D DETDGRSYISAVSEIV D +E C GNAKNTMGEARMDI SE+GY+GF DSESYGLTWKVRGFCKDKSNPEIFD VNVYGN+YDS++HH+ F +YTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN VY+N +HGIIASKRCN VSIQ N VYGG ETSAGIFLHRSSD AIVK NY ++NGDAG+AMLES NAD+S N FE NKYG+RMSVGC +N+ N SN SKY YTY GSD PDV +GRSQ+N+F N+ G + IKIKE+DG+ +NVF ++ ++ + ++ +V+ GN GL EG EL V +CFD
Sbjct: 30 DTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSE-------TYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFD 501
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 598 bits (1541), Expect = 1.170e-202 Identity = 299/468 (63.89%), Postives = 365/468 (77.99%), Query Frame = 2
Query: 389 VSVRYSATTGRLYLEAGVVGE-RGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVF----SNPGLIEWSNSTKNVVTGNIGLEGAE-ELLVE-PACFD 1771
VS+RY+ TT RLYLE+ G RGGCVT+ QIWE+R G K PL+A+DP +G VS + TGTWLL E+LYVEDG+TLKV+G+ +GG +ELRL S+ N T++NLRAHGGSLDF +TKVF WDT N D DETDGRSYISA+SEI+ D +E C GNAKNTMGEARMDI SE+GY+G+ DSESYGLTWKVRGFC+DKSNPE+FD VNVYGN+YDS++HHMNF +YTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN VY+N +HGIIASKRCN VSIQ N VYGG ETSAGIFLHRSSD AIVK NY ++NGDAG+AMLES NAD+S N FE NKYG+R SVGC +N+ NNT SN ++Y Y+Y G+D PDV +GRSQ+N+F N+ G + IKIKE+DG+ +NVF ++ ++ + N+T+N++ GN GL+ E EL V+ ACFD
Sbjct: 44 VSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLST-------NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFD 497
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 568 bits (1463), Expect = 4.560e-191 Identity = 283/484 (58.47%), Postives = 357/484 (73.76%), Query Frame = 2
Query: 332 DTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEELLVEPACFDETDE 1783
DT SPNEPIPKPECD + VS+RYS+ RLYLE+ RGGCVT++QIWE + G +APL+A+D +G +S++ TGTWLL E+L+VEDG+TLKV G ++GG +ELRL S+ SD T++NLRAHGGSLDF +TKVF WDT N D DE DGRSY+SAVSE++ D ++ C G AKN MGEARMDI SEMGY+G+H SESYGLTWKVRGFC DKSN ++F+ VNVYGNIYDS++HH NF VYTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN VYDN +HGIIASKRCN VSIQ N VYGG +SAGIFLHR DAG+AM+ES NAD+S N+FE NKYGIR SVG N+ NN S +++Y+ Y+Y GSD PDV +GRSQDN+F N +IGG ++IK+ ++DG+ +N F + I ++++ K +++GNIGL ++ +V A FD + +
Sbjct: 23 DTKSPNEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRG------EAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLST--SD-----TFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSKLKVVNGASFDASSD 492
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 566 bits (1459), Expect = 7.270e-191 Identity = 277/478 (57.95%), Postives = 358/478 (74.90%), Query Frame = 2
Query: 359 PKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEELLVEPACFDETDEEAL 1792
PKP+CDS+ VSVRY+A + RLY+E+ RGGCVT++QIWE + G+ PL+A+DP +G VS + TGTWLL E++YVEDG+TL+V G ++GG +ELRL S+ SD T+++LRA+GGSLDF +TKVF WDT N D DE+DGRSYISAVSE++ D + C G AKN MGEARMDI SEM Y+G+H +E+YGLTWKVRGFC DK NPE+FD VNVYGNIYDS++HH NF VYTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN V++N +HGIIASKRCN VSIQ N VYGG+ SAGIFLHRSSD IVK NY ++NGDAG+AMLES NAD+S N FE NKYG+R+SVGC N+ N + ++++ ++Y G+D P+V +GRSQDN+F N +IGG ++I +KE+DG+ +N F + I + ++TK +++GN GL + + A FDE+ +
Sbjct: 6 PKPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGS------PLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLST--SD-----TFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLADSTLKVDRGATFDESSDHGF 469
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE) HSP 1 Score: 525 bits (1353), Expect = 9.280e-178 Identity = 247/294 (84.01%), Postives = 275/294 (93.54%), Query Frame = 2
Query: 929 MGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEEL-LVEPACFDETDEEALADGDC 1807
MGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRN +HSNSGY GYDPHDDSD+LTIHDNVVYDNNWHGIIASKRCNNVSIQ NIVYGGN+TSAGIFLHRSSDYA+VK+N+CY NGDAGMAMLESSNA+ISGN+FEGNKYGIRMSVGC +N V+NNT +NTS+YA+YTY+GSDP +VQ TGRSQDNIFDSNTV+GGPQAIK+KESDG+ +TNNVF PG++E+SN+T+NVVTGN+GLE A E+ LVEPACF ETDE +LA+ C
Sbjct: 1 MGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNVVHSNSGY-GYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGNVGLEDATEVELVEPACFAETDEASLAEYSC 293
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 523 bits (1346), Expect = 5.620e-175 Identity = 256/374 (68.45%), Postives = 303/374 (81.02%), Query Frame = 2
Query: 389 VSVRYSATTGRLYLEAGVVGE-RGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSK 1507
VS+RY+ +T RLYLE+ G RGGCVT+ QIWE+R G K PL+A+DP +G VS + TGTWLL E+LYVEDG+TL+V+G+ +GG +ELRL S+ N T++NLRAHGGSLDF +TKVF WDT N D DETDGRSYISA+SEI+ D +E C GNAKNTMGEARMDI SE+GY+G+ DSESYGLTWKVRGFC+DKSNPE+FD VNVYGN+YDS++HHMNF +YTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN VY+N +HGIIASKRCN VSIQ N VYGG ETSAGIFLHRSSD AIVK NY ++NGDAG+AMLES NAD+S N FE NKYG+R SVGC +N+ NNT SN ++
Sbjct: 44 VSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLST-------NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAE 403
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 518 bits (1334), Expect = 1.020e-171 Identity = 264/486 (54.32%), Postives = 333/486 (68.52%), Query Frame = 2
Query: 332 DTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEELLVEPACFDETDEEA 1789
+T S N+ I KP C S+ VS+RYS T+ RLYLE+ RGGCVT++ IW GG APL+A+ P +G VS +ITGTWLL E LYVEDG+TL+V G ++GG +ELRL S+ ++NLRAHGGSLDF +TKVF WDT N D++ GRSYISAVSE++ D + C G AK MGEARMDI SEM Y+G+ SESYGLTWKVRG C+D SN E+FD VNVYGNIYDS++HH F VYTYGH+QGDWRRN +H N+ Y G+DPHDDSD+LTIHDN VY+N HGIIASKRCN G S GIFLHRSSD AIVK+NY ++NGDAGMA++E+ NAD+S N FE NKYGIRMSVGC +N+ N + +SKY +YTY+GSD P V +GRSQD GG + +K+ +DG+ +N F + I + + +++GN GL GA + + +CFD+ + A
Sbjct: 23 NTASRNKAIAKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGG------APLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKD-------FINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEY-GFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLGGASLKVTDGSCFDKKSDSA 494
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 504 bits (1299), Expect = 1.970e-166 Identity = 260/484 (53.72%), Postives = 326/484 (67.36%), Query Frame = 2
Query: 332 DTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHGIIASKRCNNVSIQNNIVYGGNETSAGIFLHRSSDYAIVKNNYCYNNGDAGMAMLESSNADISGNVFEGNKYGIRMSVGCTENMVHNNTFSNTSKYALYTYEGSDPPDVQVTGRSQDNIFDSNTVIGGPQAIKIKESDGSHVTNNVFSNPGLIEWSNSTKNVVTGNIGLEGAEELLVEPACFDETDE 1783
+T S N+ I KP C S+ VS+RYSA++ RLYLE+ RGGCVT+++IW+ G APL+A+ P +G VS + TGTWLL EDLYVEDG+TL+V G ++GG ELRL S+ ++NLRAHGGSLDF +TKVF WDT N D + RSYISAVSEI+ D E C G AK TMGEARMDI SEM Y+G+ SESYGLTWKVRGFCKD SNPE+FD+VNVYGNIYDS++HH +F VYTYGH+QGDWRRN +H N Y G+DPHDDSD+LTIHDN V G+ S GIFLHRSSD AIVK+N NGDAGMA++ES NAD+S N FE NKYG+R+SVGC +N+ N S++SKY +YTYEGSD P V +GRSQDNIF NT+ GG ++IK+ +DG+ +N F + ++ +++GN GL A + + ACFD+ +
Sbjct: 26 NTSSKNKAISKPSCKSSTKVSIRYSASSKRLYLESADGKTRGGCVTLEEIWKDLDG------SAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKD-------FINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREY-GFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLGSATLKVSKGACFDKKSD 495
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 414 bits (1064), Expect = 8.770e-134 Identity = 203/298 (68.12%), Postives = 235/298 (78.86%), Query Frame = 2
Query: 332 DTPSPNEPIPKPECDSNKTVSVRYSATTGRLYLEAGVVGERGGCVTIDQIWEARGGGTKTGAKAPLHAIDPMTGAVSENITGTWLLEEDLYVEDGVTLKVWGNASGGYVEELRLKSSPASDEGGNGTYVNLRAHGGSLDFENTKVFGWDTVNNDYDMDETDGRSYISAVSEIVIDPNELCVGNAKNTMGEARMDIVKSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTIHSNSGYAGYDPHDDSDYLTIHDNVVYDNNWHG 1225
DT SPN+PI KP+CDS+ VS+RY+++T RLYLE+ RGGCVT+ QIWE R G KAPL+A+DP +G SEN TGTWLL E+LYVEDG+TLKV+G GG +ELRL S+ TY+NLRAHGGSLDF TKVF WDT N D DETDGRSYISA+SEI+ D +E C GNAKNTMGEARMDI SE+GY+GF DSESYGLTWKVRGFCKDKSNP IFD+VNVYGN+YDS++HHM F +YTYGHQQGDWRRN +H NSGY G+DPHDDSD+LTIHDN VY+N HG
Sbjct: 29 DTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAG------KAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTD-------TYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGY-GFDPHDDSDFLTIHDNEVYNNGNHG 312 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig74.15033.1 >prot_C-linearis_contig74.15033.1 ID=prot_C-linearis_contig74.15033.1|Name=mRNA_C-linearis_contig74.15033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=556bp MASYKALRRLALAALLAAAVASDSSDASETADSPTPSPHLNEHASPTMMYback to top mRNA from alignment at C-linearis_contig74:608529..617029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig74.15033.1 ID=mRNA_C-linearis_contig74.15033.1|Name=mRNA_C-linearis_contig74.15033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8501bp|location=Sequence derived from alignment at C-linearis_contig74:608529..617029- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig74:608529..617029- >mRNA_C-linearis_contig74.15033.1 ID=mRNA_C-linearis_contig74.15033.1|Name=mRNA_C-linearis_contig74.15033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3336bp|location=Sequence derived from alignment at C-linearis_contig74:608529..617029- (Chordaria linearis ClinC8C monoicous)back to top |