mRNA_C-linearis_contig73.14970.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14970.1
Unique NamemRNA_C-linearis_contig73.14970.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: D7FX58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX58_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 3.610e-112
Identity = 167/177 (94.35%), Postives = 174/177 (98.31%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLISGPV 785
            MFYLKEL+RPML+PPSDFGPK KDT+RRKLIEEVEGTSVGSLGFVITV +V+DDQI MGTIEFDTGFANV+VVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGL+SGPV
Sbjct:    1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLVSGPV 177
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A835YX29_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX29_9STRA)

HSP 1 Score: 227 bits (579), Expect = 5.890e-69
Identity = 117/177 (66.10%), Postives = 140/177 (79.10%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVT--DDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAG-GYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGAELKAVGSIKDDFLGLIS 776
            MFYLK LK+ +L+ P  FGP   + V R L+E+VEG S+G+ GFVI+V S    +  + MGTIE+DTG AN++  Y AICFRPF NEVLDA VS+VT+LGFFAEVGPLE+FVSR  MP+DIA  GYD VGDMWVS ED + EIK GCGVRLRIIG+TV AELKAVGS+KDD+LGL+S
Sbjct:    1 MFYLKTLKKDLLLEPQFFGPNLHEVVGRLLLEQVEGMSLGNDGFVISVFSQNSANTSMEMGTIEYDTGAANIICTYEAICFRPFRNEVLDATVSNVTDLGFFAEVGPLEIFVSRFNMPEDIANTGYDSVGDMWVS-EDKEVEIKKGCGVRLRIIGITVEAELKAVGSMKDDYLGLVS 176
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A6S9LV75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LV75_HETAK)

HSP 1 Score: 207 bits (528), Expect = 2.390e-61
Identity = 101/175 (57.71%), Postives = 135/175 (77.14%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV-GAELKAVGSIKDDFLGLIS 776
            MF+LK+L R + +PP+  GPK K+T+RR+LIEEVEG +VG LG+VITV  + D+ I  G IE+D+GF    VVY AICFRPF +EVLDA +S VTELGFFA+VGPL VFVSR  MP D+  GYDP  ++W  SED + E+++G GVRLRI+G++V  A++ A+G++ DD+LGL+S
Sbjct:    1 MFFLKQLTRELQLPPAFLGPKLKETIRRRLIEEVEGQAVGKLGYVITVTEMKDEAISQGLIEYDSGFVTFNVVYSAICFRPFRDEVLDATISSVTELGFFADVGPLTVFVSRHAMPADLQEGYDPARELW-QSEDREVELRAGAGVRLRIMGLSVDAADISAIGTVADDYLGLVS 174
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A7S2Y2T3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2T3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.720e-57
Identity = 100/175 (57.14%), Postives = 131/175 (74.86%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV-GAELKAVGSIKDDFLGLIS 776
            MF+LKEL R +L+PP+  GPK K+T+RR+LIEEVEGT +G  G+VITV  V ++ +  G I  + G     + Y AICFRPF  EVLDA V+ VTELGFFAEVGPL+VFVSR  MP D+  G+D   ++WVS ED + E++ GCGVRLRI+G++V  A++ A+G+IKDD+LGLIS
Sbjct:    1 MFFLKELTRELLLPPAYLGPKIKETIRRRLIEEVEGTCLGKYGYVITVTEVKEEGMKTGVISNEFGEVIFHISYDAICFRPFKGEVLDANVTVVTELGFFAEVGPLQVFVSRHAMPQDLQEGFDAANEVWVS-EDKEVELRQGCGVRLRIMGLSVDAADISAIGTIKDDYLGLIS 174
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: K3XAJ8_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3XAJ8_GLOUD)

HSP 1 Score: 193 bits (491), Expect = 6.640e-56
Identity = 98/175 (56.00%), Postives = 129/175 (73.71%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLIS 776
            MF+LK+L R +L+ P  FGPK  D +R +LIEEVEGTS+G  G+VITV  V D+ I  G I+ ++GF    + YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+ GCGVRL+I+GV+V   E+ A+G+IKDD+LGLIS
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKGCGVRLKIMGVSVDVTEINAIGTIKDDYLGLIS 174
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A024TU38_9STRA (Uncharacterized protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TU38_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.790e-53
Identity = 95/175 (54.29%), Postives = 127/175 (72.57%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLIS 776
            MF+LK+LKR +L+ P  FGPK  D +R +LIEEVEGTS+G  G+VI V  V D+ I  G I+ ++GF    + YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +D + EI+ G GVRL+I+GV++   E++A+G+IKD++LG+IS
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGFVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSIDVTEIQAIGTIKDNYLGVIS 174
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A024GUM2_9STRA (ING domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUM2_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.800e-52
Identity = 96/176 (54.55%), Postives = 128/176 (72.73%), Query Frame = 3 
Query:  252 SMFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLIS 776
            +MF+LK+L R +L+ P  FGPK  D +R +LIEEVEGTS+G  G+VITV  V D+ I  G I+  +G+    + YRAI FRPF N+VLDA VS V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+  CG+RLRI+GV++   E+ A+G+IKDD+LGLIS
Sbjct:  264 NMFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDSSGYVCFNIRYRAILFRPFKNQVLDAVVSVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWIS-DDREVEIRKSCGIRLRIMGVSIDVTEINAIGTIKDDYLGLIS 438
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A7S2HLJ0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLJ0_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.420e-51
Identity = 91/178 (51.12%), Postives = 126/178 (70.79%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDD-QIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFLGLISGP 782
            MF+ K+L+  +LI P   GPK K T+RR+LI+E+EG+ +  +G+V+ V  + D   I  G IE++TG  + +V Y A+ FRPF NEVLDA V+ V +LGFF + GPL+VFVSR  +P DI  G+DP  DMWVS ED + EIK GC VRLRI+G+ + A ++ AVG+++DDFLG+I  P
Sbjct:    1 MFFYKKLRHEVLISPEYLGPKLKQTIRRRLIDEIEGSCINKIGYVVCVTDINDTTDIEAGLIEYETGHTSFMVTYGAVLFRPFKNEVLDATVTTVNQLGFFCKAGPLQVFVSRYNLPGDIREGFDPNQDMWVS-EDGEVEIKRGCVVRLRIMGLAMEASKINAVGNMRDDFLGVIELP 177
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A425DP05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DP05_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.340e-49
Identity = 91/171 (53.22%), Postives = 123/171 (71.93%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTVGA-ELKAVGSIKDDFL 764
            MF+LK+LKR +L+ P  FGPK  D +R +LIEEVEGTS+G  G+VI V  V D+ I  G I+ ++G+    + YRAI FRPF NEVLDA V+ V +LGFFAEVGPL+VFVSR  M  D+  GYD     W+S +D + EI+ G GVRL+I+GV++   E++A+G+IKD++L
Sbjct:    1 MFFLKQLKRELLLHPMHFGPKLHDIIRLRLIEEVEGTSLGKFGYVIAVTEVRDEDIGQGVIQDNSGYVCFNIAYRAILFRPFKNEVLDAVVTVVNQLGFFAEVGPLQVFVSRHAMSTDLNEGYDHEQSAWIS-QDREVEIRKGVGVRLKIMGVSIDVTEIQAIGTIKDNYL 170
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BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Match: A0A225WVR4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVR4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.830e-48
Identity = 86/155 (55.48%), Postives = 113/155 (72.90%), Query Frame = 3 
Query:  255 MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMSVTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRIIGVTV 719
            MF+LK+L R +L+ P  FGPK  D +R +LIEEVEGTS+G  G+VITV  V D+ I  G I+ ++GF    + YRAI FRPF N+VLDA V+ V +LGFFA+VGPL+VFVSR  MP D+  GYD   + W+S +D + EI+ GCGVRL+I+GV+V
Sbjct:    1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWIS-DDREVEIRKGCGVRLKIMGVSV 154
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX58_ECTSI3.610e-11294.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YX29_9STRA5.890e-6966.10S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A6S9LV75_HETAK2.390e-6157.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y2T3_9STRA1.720e-5757.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3XAJ8_GLOUD6.640e-5656.00Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A024TU38_9STRA5.790e-5354.29Uncharacterized protein n=8 Tax=Saprolegniaceae Ta... [more]
A0A024GUM2_9STRA5.800e-5254.55ING domain-containing protein n=1 Tax=Albugo candi... [more]
A0A7S2HLJ0_9STRA2.420e-5151.12Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A425DP05_9STRA1.340e-4953.22Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225WVR4_9STRA4.830e-4855.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:693245..697629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.2
Seed ortholog evalue7.3e-92
Seed eggNOG ortholog2880.D7FX58
Preferred namePOLR2G
KEGG rclassRC00003,RC00060,RC00181,RC00496,RC02795
KEGG koko:K03015,ko:K09186
KEGG ReactionR00435,R00441,R00442,R00443,R03875,R03938,R04866,R04867
KEGG Pathwayko00230,ko00240,ko00310,ko01100,ko03020,ko04934,ko05016,ko05169,ko05202,map00230,map00240,map00310,map01100,map03020,map04934,map05016,map05169,map05202
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010590,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012501,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031369,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0045935,GO:0045948,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051302,GO:0051716,GO:0055029,GO:0060147,GO:0060211,GO:0060213,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061013,GO:0061014,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097159,GO:0097393,GO:0097394,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1903313,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGsCOG1095@1,KOG3298@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03021,ko03036,ko03400
Exons6
Model size1479
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14970.1prot_C-linearis_contig73.14970.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 693936..697375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.6623518-UTR-C-linearis_contig73:693244..6939351622930404.6623518-UTR-C-linearis_contig73:693244..693935Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 693245..693935 -
1690881052.7379239-UTR-C-linearis_contig73:693244..6939351690881052.7379239-UTR-C-linearis_contig73:693244..693935Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 693245..693935 -
1622930404.7923687-UTR-C-linearis_contig73:697375..6976291622930404.7923687-UTR-C-linearis_contig73:697375..697629Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 697376..697629 -
1690881052.8266387-UTR-C-linearis_contig73:697375..6976291690881052.8266387-UTR-C-linearis_contig73:697375..697629Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 697376..697629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930404.680415-CDS-C-linearis_contig73:693935..6939921622930404.680415-CDS-C-linearis_contig73:693935..693992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 693936..693992 -
1690881052.7558239-CDS-C-linearis_contig73:693935..6939921690881052.7558239-CDS-C-linearis_contig73:693935..693992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 693936..693992 -
1622930404.6990047-CDS-C-linearis_contig73:694853..6949911622930404.6990047-CDS-C-linearis_contig73:694853..694991Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 694854..694991 -
1690881052.7664924-CDS-C-linearis_contig73:694853..6949911690881052.7664924-CDS-C-linearis_contig73:694853..694991Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 694854..694991 -
1622930404.717663-CDS-C-linearis_contig73:695388..6955771622930404.717663-CDS-C-linearis_contig73:695388..695577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 695389..695577 -
1690881052.781996-CDS-C-linearis_contig73:695388..6955771690881052.781996-CDS-C-linearis_contig73:695388..695577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 695389..695577 -
1622930404.734422-CDS-C-linearis_contig73:696132..6962021622930404.734422-CDS-C-linearis_contig73:696132..696202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 696133..696202 -
1690881052.79581-CDS-C-linearis_contig73:696132..6962021690881052.79581-CDS-C-linearis_contig73:696132..696202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 696133..696202 -
1622930404.7525473-CDS-C-linearis_contig73:696573..6966411622930404.7525473-CDS-C-linearis_contig73:696573..696641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 696574..696641 -
1690881052.8063653-CDS-C-linearis_contig73:696573..6966411690881052.8063653-CDS-C-linearis_contig73:696573..696641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 696574..696641 -
1622930404.7730384-CDS-C-linearis_contig73:697363..6973751622930404.7730384-CDS-C-linearis_contig73:697363..697375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 697364..697375 -
1690881052.8154492-CDS-C-linearis_contig73:697363..6973751690881052.8154492-CDS-C-linearis_contig73:697363..697375Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 697364..697375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14970.1

>prot_C-linearis_contig73.14970.1 ID=prot_C-linearis_contig73.14970.1|Name=mRNA_C-linearis_contig73.14970.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp
MFYLKELKRPMLIPPSDFGPKFKDTVRRKLIEEVEGTSVGSLGFVITVMS
VTDDQIHMGTIEFDTGFANVVVVYRAICFRPFVNEVLDAAVSHVTELGFF
AEVGPLEVFVSRLGMPDDIAGGYDPVGDMWVSSEDSDTEIKSGCGVRLRI
IGVTVGAELKAVGSIKDDFLGLISGPV*
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mRNA from alignment at C-linearis_contig73:693245..697629-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14970.1 ID=mRNA_C-linearis_contig73.14970.1|Name=mRNA_C-linearis_contig73.14970.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4385bp|location=Sequence derived from alignment at C-linearis_contig73:693245..697629- (Chordaria linearis ClinC8C monoicous)
GGTTTGTTGTGCGAGCTCGGTGACTCCTCTACGCAAGCACAGCCCTCTCT
GGAACAGTGCTTCGCATATTTTCCTGGATTTCAAGGTGGACGGATCTGTG
TGAGACCAGAGGCCGCCAAACCAGGGCGCCAAACGGAGACGGAGTACAGC
AACCGCTCGTCGGAGACAAGAGAGCAGCCAGGATAGAGGACACCATACGC
AGTACGCAGTGCGGGTAGATCGCCAGGAAAGCAGGCTTCGGCTCGATCAG
CAGCATGTTCTATCTTGTGAGTCGAACCGATGTTGTGTGTCTGTCGCGCT
GGGTGTTGTGGGTGTTGGTAGCCAGCGAAAGAGTGTGGAAAGTACAAGAA
GAATACCCTGGCCTCGATTTGAAAATTTGTATGCCATGAATCCTCCGAGC
CGCGAGTAGAGACGATGTGGAGCAGAAGAAAAAACCCTTTGCCGCCTTCC
TCGCGTTGTGCTCGCTGGTGGCATAGCTAGTCCCACGCAAGGTTCACAGA
TCGCTCCAAGGTATGGTGCGAGTAACTAAGCTACAAGAACAGATCCCCCG
CAAACAGAAGAACGCCTCCGTGAACTTCTTGGATCACCCAGCACCGCACA
CAGCAGCGGTCAGTTTAGGAGGTCATGTCTAGAGGGCTACATTCAATGTC
GGGGGGGCGTTGTTTTCGTAGGTTGTGAGTTGTCAGCTCCTCGTACCTGC
TGTTACCGTACTTTCCGTGGCGCCGTTCACACAGGGTTAAGGTTGCTTGC
GGCGTCGTCTCTCTACACAGAAAAAAAAACGGCTGTACATTGTCATCGAT
TGCTGGCAACGCGGATGCCTATGTAGAACCACACCCCTTTATCGTCTTAT
TTCTATCCTATCCACCATCATCACACCGATATTAAAAACAATTGGTTCGT
TTTATTTTATTTTGTCCTACCCGATCTGATCCGCCCCCCTTCATCACTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCAGAAAGAGCTGAAG
CGGCCGATGCTCATTCCGCCGTCAGACTTCGGCCCAAAGTTCAAGGACAC
AGTGCGGTGAGAACGGAGGGAAAGGACCAAAAGTTTTGCGCTTCAGATCT
TCGGTTTCGAAACACGCGATGCAGCCGGAGCCTGTGGTCGCCAAAGACCT
TCTTGAACTGCTGGGCCGCTTCCTGAAAATGATGTTGCAACTGTGTTGTG
GTTCTGGGGGTTGGAGTTCCTATCCGGCCGCAGTACATAGAACAGTGATT
TTGTGAGGGTTTGTTTCCAATCAATCAATGAACACGTGCGCCGGAAAAAG
GAAACACGCCGCTACAGAGTAGTTCCGCCACGTGCTGCTACTGTACTCGC
TGTTTGTTGCTTCTTGCTCGTCCCTGACCGTGACGTTGCTGTGTGCTATG
TTATGTTTCTTGCGGGATCATCGTCAGACGAAAGCTCATCGAAGAGGTGG
AGGGGACGTCGGTAGGGTCTCTCGGGTTTGTCATCACCGTCATGTCTGTG
AGTGGAGATGCATGCATACATACAACATCAGTTTCGAACAGCAAAAAATG
AGTAATTCAGCCCGAGCGCTGGAAGATGTCGACAGATTGCTATCAGGAGT
TTGGTCCGTTCTGCAAAACGCATTGCTCCTCTTACAAATAGAGGATGCAA
CCCCTTCCTCACGAGCCTGCATGGTTGACTTGTTGTAGCACGACCGGTCA
GCCACGTACAGAGCTACGGCCATACGCAGAGCCAAGCTGCTGCGTTCGAT
CAGTGTTTTCGGCATGCTCACTATTTATTTCCACCAGACCCACCTTGTCC
TGGGCTATTATTCGAGCCGTCGCGTCCAAATACAGCTGCTAAAAAACGCC
GCGTCCAAAGCGCAGGACACATACACTGACCCTACGTTCGGGTCCAGCGT
AGACGAGTAGGTATATTCTGTGCGGAAAACTCTCCTATTGCAGATCCGCA
CCCATCCCCGCTAGCCTTTGGGCCCTGGGCTGGACAGACAACCCACAGCG
CGTTTTGCTTTCTCACGCATTTCGGCCCCGTTGCATTCACACGCACGCAC
AGGTAACCGACGATCAGATCCACATGGGTACCATAGAGTTCGACACCGGC
TTCGCGAACGTGGTGGTGGTGTACCGCGCCATCTGCTTCCGTCCCTTCGT
TAATGAGGTCCTGGATGCCGCCGTCAGCCACGTCACCGAGCTCGGATTCT
TCGCGGAAGTTGGCCCGCTCGAGGTGTTCGTTTCTCGCTTGGTGAGTCGA
GTCGAGTCCACTCGGAGGAGAGAAGCGAGCGCGGTGGAAGTATGGCTCAG
TGAACCCCGCGTGTGTGGCATGAGGAGTCGCGCGGCCTTTTTTTGTTCCG
CGCTTTGCAGAGTTGGCGCTTTGGTGGTTGGTATCTTGTAACCTCCGGCC
GTCGGCAGGTGTTGTAGGCCGATAAATTCGGCTCATTTTGGCTCTCACGG
CTGGCTGGCCGTGAGGTTCGTGGGGTGATTATTCACCTGCCTTGAGCTCT
TGTACTAAAAAACAAAATCGTCCTTTTGTTTTTGTTCCGGTTTATTTGTT
TTTGACCGATGCCTTCGCGTTGTGCTTGCTTTTGCCGCGCCTCGGCCCCA
CCCACGCAAAATCTTTGCGCTGCATTTGGTTTTCGCAGGGCATGCCGGAC
GACATCGCCGGAGGCTACGACCCGGTGGGAGACATGTGGGTCTCTTCGGA
GGACTCGGACACGGAGATCAAATCGGGCTGCGGAGTGCGGTTGCGAATCA
TCGGGGTCACTGTGGGAGCGGAGTTGGTGAGAGAGGAGAGGAGCGAAGAG
CTTTTGGCTTTTGGGGTCTCGCACAGCACATTTCTGGACGTGTTTTTTTT
TTCTTCTTTTTTTTGGCTCGACAGGGCGGCCGGATCTCCCATCATTTTGT
GCGTTTATTTTTCATTTGGCATCCCAACGCTTGCCCCCAAAGCCACCGTT
TCGGCCGAACACGGCATATGCGGGTGGCGCTACGCGTGTTTCGAAATGAA
CGGCAAAAAATGGTGATGCTGTTGTGGTCGTTGCCTGGTGGTATGTGTAT
GTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTTCCGATCAAG
GTGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTC
GGTGTATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGG
TATGGTGGGAACGCTTTTTTCTTTTTCTTTTCCAATGACAAAGTTTGACA
TCGAACAGAGTGGAAACACGCCGATATTCATCGACGTGTCTGTGAGTCCC
AAGATCCAGGTGCCTACATATGAAGTTGCCCAACATTCGGCGATTGTTCG
TTTGTCGGTATAGGATGGGACACCCTTCCAGCATCGGTCCTGATCCCCCA
CGGTTGTGCCTCGGAGTACTTTGCTGATCGTAGAACGCTTGTGGTGATTA
ATGTTTGCTGTCCTATAGCCGAGGGCGTGCGGTGTGGCAACCTCTTCATT
TCCCCCAATCACCCGTCAAGTAGGCTTTCTTGCTATCTCAATAGGGCGGC
GCCACCCGGCCTGTCTCGTCGACCGACGCTGTTTTTGTCTCCTCGACGTT
TGCTGCTTCGTCCGCACCTTATCGCTCGGCCTCCCAGAAAGCGGTAGGCA
GCATAAAGGACGACTTTCTGGGGCTTATTTCTGGACCCGTATAGCAGAAC
CGCCGGTTCCGAGGCGGTACATGCCATGGGTGTGTGACTGCTGTAGCAAG
TGGGTATATATCATACGTTCGTTGCCAGGGATTCCAGAGCGGAAAGGCAT
GCGCACGGTGCCCTTTCACGGGGCGATGAGGGCCGACAGAATTGCGGTGT
ATGGTACTTTTGTGTCTGGTGCAGTTATTTAATTCGGCGGCGCATGGCAT
TCCCGACCATTCCGTTAACATGCGGAAAATTGGTGGTGATGATGGTTGAC
GTCTTTCGGTCTCCCAATGAAGAGCGCACGTACATGAAGATTTTTTTGTT
GCGACGAAAAGTGGCTGCGGTGAGGGAGTCGCCAACATGTTCAAGTTTCC
TGGCGCGCGGTTGGACTCTTATCGGCTACAAATGGGCGATCTTCGCGCAA
GTTGGACCTTTTTTTGTTTTTGTTCATTGCTCTTGGCGAGTTTTGCGTTG
CCACCCGACTGGACTGTTCCGGGTTGAACCCAACGGCGGTGGCGAGGCGA
AAGAGGCATCACTAAAATAAACCTTACTCGTCAGCCGTGGTACGGATCAG
TGTCCAACGATGTTGAATCCCCAGATGCAAGCCTCTGTTTCGCCTTTTGT
ATCGAGCACGAGACATAGCAATCGTTGTCAAATCGATTTACAGCAGCAGC
AGCAGCAGCAGCAGATGGTAGCGCTTGGCATCCAC
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Coding sequence (CDS) from alignment at C-linearis_contig73:693245..697629-

>mRNA_C-linearis_contig73.14970.1 ID=mRNA_C-linearis_contig73.14970.1|Name=mRNA_C-linearis_contig73.14970.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig73:693245..697629- (Chordaria linearis ClinC8C monoicous)
ATGTTCTATCTTATGTTCTATCTTAAAGAGCTGAAGCGGCCGATGCTCAT
TCCGCCGTCAGACTTCGGCCCAAAGTTCAAGGACACAGTGCGAAAGAGCT
GAAGCGGCCGATGCTCATTCCGCCGTCAGACTTCGGCCCAAAGTTCAAGG
ACACAGTGCGACGAAAGCTCATCGAAGAGGTGGAGGGGACGTCGGTAGGG
TCTCTCGGGTTTGTCATCACCGTCATGTCTACGAAAGCTCATCGAAGAGG
TGGAGGGGACGTCGGTAGGGTCTCTCGGGTTTGTCATCACCGTCATGTCT
GTAACCGACGATCAGATCCACATGGGTACCATAGAGTTCGACACCGGCTT
CGCGAACGTGGTGGTGGTGTACCGCGCCATCTGCTTCCGTCCCTTCGTTA
ATGAGGTCCTGGATGCCGCCGTCAGCCACGTCACCGAGCTCGGATTCTTC
GCGGAAGTTGGCCCGCTCGAGGTGTTCGTTTCTCGCTTGGTAACCGACGA
TCAGATCCACATGGGTACCATAGAGTTCGACACCGGCTTCGCGAACGTGG
TGGTGGTGTACCGCGCCATCTGCTTCCGTCCCTTCGTTAATGAGGTCCTG
GATGCCGCCGTCAGCCACGTCACCGAGCTCGGATTCTTCGCGGAAGTTGG
CCCGCTCGAGGTGTTCGTTTCTCGCTTGGGCATGCCGGACGACATCGCCG
GAGGCTACGACCCGGTGGGAGACATGTGGGTCTCTTCGGAGGACTCGGAC
ACGGAGATCAAATCGGGCTGCGGAGTGCGGTTGCGAATCATCGGGGTCAC
TGTGGGAGCGGAGTTGGGCATGCCGGACGACATCGCCGGAGGCTACGACC
CGGTGGGAGACATGTGGGTCTCTTCGGAGGACTCGGACACGGAGATCAAA
TCGGGCTGCGGAGTGCGGTTGCGAATCATCGGGGTCACTGTGGGAGCGGA
GTTGAAAGCGGTAGGCAGCATAAAGGACGACTTTCTGGGGCTTATTTCTG
GACCCGTATAGAAAGCGGTAGGCAGCATAAAGGACGACTTTCTGGGGCTT
ATTTCTGGACCCGTATAG
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