mRNA_C-linearis_contig73.14938.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig73.14938.1
Unique Name	mRNA_C-linearis_contig73.14938.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 2.420e-138
Identity = 284/510 (55.69%), Postives = 312/510 (61.18%), Query Frame = 1

Query:   31 GGFIRGADRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLARHGSSFAFKEEVLGTREDGDDKNGGVARPHPTNPVFPPPCAIHMPPASYRRDGTR--HKEGG--------PHHANGAC---------GHAPPPG--------PPPHAYPSCAIHGGGNRGA--PAGACARWMAG--PTGPGSPLPLGGG-------DDRPRLRRRRGXXXXXXXXXXXXXXXXXXNMS---------------GGVPSEYEERLRGGPGGAQEQH--------------GGCGGVFRLPD--LDHGYDMGGSGLAN---------GNLYRPVPKPAPGFGGSDRSTGSGSSWGKGCGSPSVTAETLSSTPPLELSQMEGFSPTSTSNSFFGGGSVGNGTAPPP-REVWNQGQY 1323
            G FIRGADRR LQN+RV+RR LVYAIGLSPNF+QVNTLK PEYFGQYGEI KLVINHH GV  DDPR+GSASAYITF R EDAWAA+CSVDGFR+MGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGD++DRFTKDEVQ+GLARHGSSFAFKEEVLG R       G  A P PTNPVFPPPCA  M PA YRR+G     ++GG         H     C         G+ PPP         P P     C   GGG  G   P    ARW     P  PGSPLPL GG       D+RPR R    XXXXXXXXXXXXXXX   N                  GVP+EY E++   P G Q  H                 G VFRLPD   D  ++ GG              GN Y P P+PA GFGG   S GS + WGKG  SP  T ETLS+TPPLELS ++G SPTS S SF G G  G G + P  +E+WN+ QY
Sbjct:   58 GVFIRGADRRALQNLRVVRRNLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLGLARHGSSFAFKEEVLGDR-------GNTAAPRPTNPVFPPPCA--MLPAPYRREGAGKPQRDGGNMGVGGRQQHQXXXDCEIYRHGNTGGNGPPPPKALPMSLPPSPQVCHPCRTRGGGCCGGAFPGAEAARWAGSGAPLTPGSPLPLDGGGLSLSGSDERPRRRXXXXXXXXXXXXXXXXXXXGHGNDGCGGPTAPAQQQYGHHAGVPNEYGEQMT--PAGQQASHFELTAAAAARAGLGSPTGDVFRLPDHVFDRPFEFGGXXXXXXXXXXXXXXGNPYYPAPQPAQGFGGG--SYGSSAGWGKGRNSPLATPETLSNTPPLELSPLDGSSPTSASASFQGFGCAGGGASDPSAQELWNRTQY 554

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 3.240e-132
Identity = 347/746 (46.51%), Postives = 386/746 (51.74%), Query Frame = 1

Query:   31 GGFIRGADRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTK---DEVQVGLARHGSSFAFKEEVLGTREDGDDKNGGVARPHPTNPVFPPPCAIHMPPASYRRDG---------------TRHKEGGPHHANGACGHAPPPG--------PPPHAYPSCAIHGGGNR----------GA-PAGACARWMAG--PTGPGSPLPLGGG-------DDRPRLRRRRGXXXXXXXXXXXXXXXXXXN--MSGGVPSEYEERLR---GGPGGAQEQHGG---CGG-----------------------VFRLPD--LDHGYDMGGSG----------LANGNLYRPVPKPAPGFGGSDRSTGSGSSWGKGCGSPSVTAETLSSTPPLELSQMEGFSPTSTSNSFFGGGSVGNGTAPPP--REVWNQGQYHRHPRPSPTSFSGVVEAETQRGFVEQHKRLQQXXXXXXXXXXXXXXXXXXXXXXXQASFGGQQLHQLQRYFE---KNEGXGAGRTPAALPP---PPGSGFTDSSVAPAPA--LGGASSFSD-DLSFAEERLAALSWGD------GPTGDGDAHLCS--------QQSGGGGGAEVADLISRRGVRDERERDSHSSSSLWTAESSPIVGFGSLAQASAASQAEVS 1926
            G FIRGADRR LQN+RV+RRTLVYAIGLSPNF+QVNTLK PEYFGQYGEI KLVINHH GV  DDPR+GSASAYITF R EDAWAA+CSVDGFR+MGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGD++DRFTK   DEVQ+GLARHGSSFAFKEEVLG R       G  A   PTNPVFPPPC   MPPA YRR G                  +EG     N A G+APPP         P PH    C   G              GA P    ARW  G  P  PGSPLPL GG       D+RPR R    XXXXXX            +    GG             G P G   ++GG     G                       VFRLPD   D  ++ GG G            +GN Y P P+PA  F G   + GS + WGKG GS   T ET S+T PL LS ++G SPTS S SF G G      AP P  +E+WN  QY    RP+P  F     AE  +           XXXXXXXXXXXXXXXX         +   QQ+ QL+R  E   K+ G   G      P     PG    D S  P P    G   S S  +LSF E++LAALSW D      G TG G  +           QQ   G G  +     R    D          + W    SP+ GFGSLA  SAASQAE S
Sbjct:   57 GVFIRGADRRALQNLRVVRRTLVYAIGLSPNFAQVNTLKQPEYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLGLARHGSSFAFKEEVLGDR-------GDTAARRPTNPVFPPPCP--MPPAPYRRAGGGKPQRDGGNMGGRYQHRREGELCRHNTAGGNAPPPPKAQPTLLPPSPHDCHPCRTRGXXXXXXXDCVDCFGGAFPGAEAARWAGGGAPLTPGSPLPLDGGSLSLSGSDERPRRRXXXXXXXXXXGATGTPGLVCHGHDACGGGXXXXXXXXXXXXYGHPAGVSNEYGGQRTAAGQQASHFELTAAAARAVPGSPPQDVFRLPDHAFDCSFEFGGGGRGGGRADDLATVDGNPYYPTPQPAQDFDGG--AYGSSAGWGKGRGSSLATPETQSNTSPLNLSPLDGSSPTSASASFQGFGXXXX-XAPDPSAQELWNPTQYRHPARPAPPFFGMRDAAEAPQQLQRDAXXXXXXXXXXXXXXXXXXXXXRQRYELESIAALKQQIKQLRRAAEEGNKSGGVALGHFGGGDPTRSRAPGVNVPDMSGPPPPPRDCGNRGSHSAAELSFVEDQLAALSWNDREDIAGGATGGGTNNTAGTLVSSGARQQGSYGAGESIQGFEERSWDEDV--------GTAWPGVPSPLAGFGSLALPSAASQAEAS 782

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.740e-53
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 1

Query:   73 VRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEV 456
            +RVI+R LVY IGL P  +       P YFGQYG I K+V+NHHHGV  DDPRHGSASAY+TF   EDAW+AI +VDGF + GR +RASFGTTKYCNSFLR L CNN DCLYLHELGD+ DRFTK+E+
Sbjct:    1 LRVIQRNLVYVIGLGPGITAGEAAS-PPYFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 200 bits (508), Expect = 9.550e-53
Identity = 99/179 (55.31%), Postives = 126/179 (70.39%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLARHGSSFAFKEEVLGTREDGDDKNGGVARPHPTNPVFPPP 588
            D+R+L NVRVI+R LVY IGL  + +    L+  E+FGQYG I K+V+NH+HG  P DPRHGSASAYITF   +DA +AI +VDG++  GR IRASFGTTKYCN+FLRNLPC NP+CLYLHELGD +DR+T++E+Q G ++  +     + V+G  E G    G        N VFPPP
Sbjct:  107 DKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTGASKTDAGPFGTQTVVG--EGGPSGTGKKV----ANSVFPPP 279

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.830e-48
Identity = 100/187 (53.48%), Postives = 125/187 (66.84%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSAS----AYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLARHGSSFAFKEEVLGT----REDGDDKNGGVARPHPTNPVFPPP 588
            DR+ LQN+RV++R LVY IG+SP+ +   TL+  EYFGQ+G+I K+V+N +H     DPR+ SAS    AYITF   EDA A I +VDGF + GR +RASFGTTKYCNSFLRNL C NPDCLYLHELG+++D FTK+++Q G     S F    EV  T    R  G+    G  R   TNP+ PPP
Sbjct:  147 DRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSG---QNSQFKNSTEVGTTDVVVRVTGNGGPSGTGR-RVTNPIMPPP 329

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS)

HSP 1 Score: 166 bits (421), Expect = 4.450e-44
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDE 453
            DR TL  +RVIRR LVYA+G+ P+ +    L+ PEYFGQYG+I K+VIN +H   P DPR  SASAY+TF   ED  A I ++DGF   GR IRAS+GT+KYC++F++++ CNNPDC YLH +GDQ+D FTK E
Sbjct:   83 DRSTLATMRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNHN--PGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: H3G5S5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S5_PHYRM)

HSP 1 Score: 166 bits (421), Expect = 7.160e-44
Identity = 81/141 (57.45%), Postives = 102/141 (72.34%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLAR 474
            +R++LQNVRV++R LVY IGL   F++ + L+  E FGQYG+I K V+N  H  A  D  + +ASAYITF   EDA   I ++DG+ + G  +RASFGTTKYCN FLRN+ CNNPDCLYLHELGD DD FTK+E+Q G  R
Sbjct:   92 NRKSLQNVRVMQRNLVYVIGLPVRFAEEDILRSNECFGQYGKIVKAVVNKSHLSA--DRANATASAYITFANKEDALCCIVAIDGYYLDGSMLRASFGTTKYCNFFLRNMQCNNPDCLYLHELGDDDDSFTKEEMQSGTRR 230

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH)

HSP 1 Score: 163 bits (413), Expect = 3.310e-43
Identity = 73/141 (51.77%), Postives = 106/141 (75.18%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLAR 474
            DR+ L N RV++R LVY  GL  +    +TL+ PEYFGQYG+++K+++  H   AP    H + SAY+TF   EDA A I +++GF + G  +RASFGTTKYCN+++R+LPC+NPDC+YLHELG+++DRFTK+E+Q+G ++
Sbjct:   37 DRKHLHNYRVVQRNLVYVTGLPASCGAEDTLRRPEYFGQYGKVSKVIV--HRNAAPP---HHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLGSSK 172

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: K0T133_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T133_THAOC)

HSP 1 Score: 176 bits (446), Expect = 6.530e-43
Identity = 79/153 (51.63%), Postives = 109/153 (71.24%), Query Frame = 1

Query:   52 DRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLARHGSSFAFKEEVL 510
            DR TL ++RVIRR LVYA+GL PN +    L+ PEYFGQYG+I K+V+N +H   P DPR  SASAY+TF   EDA A I ++DGF   GR +RAS+GT+KYC++F++++ CNNPDC YLH +G+++D FTK E+Q G    G     +++ +
Sbjct:  195 DRSTLASMRVIRRNLVYAVGLPPNVATEENLRRPEYFGQYGKIAKVVVNRNHN--PGDPRRSSASAYVTFSHKEDALACILALDGFYHDGRNVRASYGTSKYCSAFIKSVRCNNPDCTYLHHMGEKEDTFTKQEIQAGYVTSGRDVLARQKQI 345

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BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Match: A0A3M6VTA5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTA5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.000e-41
Identity = 93/193 (48.19%), Postives = 122/193 (63.21%), Query Frame = 1

Query:   55 RRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKLPEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSVDGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKDEVQVGLARHGSSFAFKEEVLGTREDGDDKNGGVARPHPTNPVFPPPCAIHMPPASYRRDGT 633
            R++LQNVRV++R LVY IGL   F+  + L+  E FGQYG+I K V+N  H  A  D  + +ASAYITF   EDA   I ++DG+ + G  +RASFGTTKYCN FLRN+ CNNPDCLYLH+LG+++D FTK+E+Q  L  H    AF++  +   E  +D+ G           FPPP   H P A+  R GT
Sbjct:  100 RKSLQNVRVMQRNLVYVIGLPVQFAHEDILRSNECFGQYGKIIKAVVNKSHLSA--DRSNATASAYITFANKEDALCCILAIDGYYLDGSVLRASFGTTKYCNFFLRNMQCNNPDCLYLHKLGEEEDSFTKEEMQAAL--HSGKAAFRDTAMANGE-AEDRAGSQ---------FPPP---HRPSAASSRTGT 275

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot

BLAST of mRNA_C-linearis_contig73.14938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FX15_ECTSI	2.420e-138	55.69	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JE06_9PHAE	3.240e-132	46.51	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CMF8_9STRA	2.740e-53	67.97	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A7S4D5P1_HETAK	9.550e-53	55.31	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]
A0A7S2GN38_9STRA	5.830e-48	53.48	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
B8BXU6_THAPS	4.450e-44	57.46	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
H3G5S5_PHYRM	7.160e-44	57.45	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A482RNX1_9ARCH	3.310e-43	51.77	RRM domain-containing protein (Fragment) n=1 Tax=a...	[more]
K0T133_THAOC	6.530e-43	51.63	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A3M6VTA5_9STRA	3.000e-41	48.19	Uncharacterized protein n=2 Tax=Peronospora effusa...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig73	contig	C-linearis_contig73:144469..147235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	433.7
Seed ortholog evalue	1.5e-118
Seed eggNOG ortholog	2880.D7FX15
KEGG ko	ko:K10643
KEGG Pathway	ko03018,map03018
Hectar predicted targeting category	other localisation
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
EggNOG free text desc.	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGs	COG5175@1,KOG2068@2759
EC	2.3.2.27
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03019,ko04121
Exons	4
Model size	1944
Cds size	1944
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig73.14938.1	prot_C-linearis_contig73.14938.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig73 144469..147235 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930399.005541-CDS-C-linearis_contig73:144468..144618	1622930399.005541-CDS-C-linearis_contig73:144468..144618	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 144469..144618 +
1690881049.637363-CDS-C-linearis_contig73:144468..144618	1690881049.637363-CDS-C-linearis_contig73:144468..144618	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 144469..144618 +
1622930399.0314794-CDS-C-linearis_contig73:145028..145325	1622930399.0314794-CDS-C-linearis_contig73:145028..145325	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 145029..145325 +
1690881049.6510556-CDS-C-linearis_contig73:145028..145325	1690881049.6510556-CDS-C-linearis_contig73:145028..145325	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 145029..145325 +
1622930399.056192-CDS-C-linearis_contig73:145642..146701	1622930399.056192-CDS-C-linearis_contig73:145642..146701	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 145643..146701 +
1690881049.6623812-CDS-C-linearis_contig73:145642..146701	1690881049.6623812-CDS-C-linearis_contig73:145642..146701	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 145643..146701 +
1622930399.073901-CDS-C-linearis_contig73:146797..147235	1622930399.073901-CDS-C-linearis_contig73:146797..147235	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 146798..147235 +
1690881049.679052-CDS-C-linearis_contig73:146797..147235	1690881049.679052-CDS-C-linearis_contig73:146797..147235	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig73 146798..147235 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig73:144469..147235+
coding sequence from alignment at C-linearis_contig73:144469..147235+

protein sequence of mRNA_C-linearis_contig73.14938.1

>prot_C-linearis_contig73.14938.1 ID=prot_C-linearis_contig73.14938.1|Name=mRNA_C-linearis_contig73.14938.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=648bp
QQQQQQQQQPGGFIRGADRRTLQNVRVIRRTLVYAIGLSPNFSQVNTLKL
PEYFGQYGEITKLVINHHHGVAPDDPRHGSASAYITFGRSEDAWAAICSV
DGFRIMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDQDDRFTKD
EVQVGLARHGSSFAFKEEVLGTREDGDDKNGGVARPHPTNPVFPPPCAIH
MPPASYRRDGTRHKEGGPHHANGACGHAPPPGPPPHAYPSCAIHGGGNRG
APAGACARWMAGPTGPGSPLPLGGGDDRPRLRRRRGQRGRRGSGTGDPSG
DGNGNMSGGVPSEYEERLRGGPGGAQEQHGGCGGVFRLPDLDHGYDMGGS
GLANGNLYRPVPKPAPGFGGSDRSTGSGSSWGKGCGSPSVTAETLSSTPP
LELSQMEGFSPTSTSNSFFGGGSVGNGTAPPPREVWNQGQYHRHPRPSPT
SFSGVVEAETQRGFVEQHKRLQQQHLLEQQQLLHLLQQQRQQQQLFQASF
GGQQLHQLQRYFEKNEGGGAGRTPAALPPPPGSGFTDSSVAPAPALGGAS
SFSDDLSFAEERLAALSWGDGPTGDGDAHLCSQQSGGGGGAEVADLISRR
GVRDERERDSHSSSSLWTAESSPIVGFGSLAQASAASQAEVSTGLHT*

mRNA from alignment at C-linearis_contig73:144469..147235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig73.14938.1 ID=mRNA_C-linearis_contig73.14938.1|Name=mRNA_C-linearis_contig73.14938.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2767bp|location=Sequence derived from alignment at C-linearis_contig73:144469..147235+ (Chordaria linearis ClinC8C monoicous)
CAGCAGCAGCAGCAGCAGCAGCAGCAACCGGGTGGGTTCATTCGGGGAGC
CGACCGGCGCACGCTGCAGAATGTGCGGGTCATCCGCCGCACCCTCGTCT
ACGCCATCGGACTGTCGCCCAACTTCTCCCAGGTTAACACGCTCAAGCTG
GTGAGTGCATACCCGCGTGCTACCCGCCGTGATTGTTTATTGTCGCTGCG
TGTGGTTTTTCTTTTTCGGCATGCCTGCACTTAAAAGCCAAAAGTTATCC
CCGTGGATGAACATCCACCCACAGGTACCGAGCCGATATTGTACGGGAAA
TATCTTTGGTCCCCACCAACCGGGCTTCTTTCTGGATGTCGCAAGGATTC
TTCGGCAATATTTCATGTGGCTTGGGTGGCGTGCCACGTTTCCGTACCCA
TTAGAAGTCGCAAACAAGCGCTCTACGTGTTACTGCAATGTTCTGTCCAC
TCTGCTGTACTTTCACGCACCCATGCCTTTCAAGGCTGCACCGCCATTCA
TTTTCACCTCCACCCTTGACCCCTTCGCCGCCACACCACGCACGTACATG
ATCGAACCAGCCGGAGTACTTCGGGCAGTACGGCGAGATCACCAAGCTCG
TGATCAACCATCACCACGGCGTCGCCCCCGACGACCCCCGGCACGGCAGC
GCCAGCGCCTACATAACGTTCGGCCGGTCGGAGGACGCATGGGCGGCCAT
CTGCTCGGTCGACGGCTTCCGCATCATGGGTCGCACCATCCGCGCGAGCT
TCGGGACGACCAAGTACTGCAACAGCTTCCTGCGCAACCTCCCGTGCAAC
AACCCGGACTGCCTGTACCTCCACGAGCTCGGAGACCAGGACGACCGTTT
CACTAAGGTGCGAGGGGGTGGTGTTGTATGTGATTGTTGTTGGTTGCGTG
TCCTGAGGTGACTTGGACGTTAAAGAAACATCAATTTTGGCGTATTGTCC
GTGTCTTTGTTTTTCATTGTCGGAAGTCGAAAGCTCGATAGTTTAAAGGT
GCAGAACGATCGACGTGAAAAACGAAACGTAAACATCGACCACTGGCAGT
CTACTCTTGCTGTCTACCATCCCAGTGTACAACGTCTCGTACAACGTAGT
ACGAAGTTGAGCTGCTGCACTCTTTAACCCCGCCCCCCCTAATTTCACGG
CCGTCTCTTGTTTGTCGGCGACAGGACGAGGTTCAGGTCGGCCTCGCGCG
GCACGGCTCGAGCTTCGCCTTCAAGGAAGAGGTCCTGGGGACCCGCGAAG
ACGGCGACGACAAGAACGGCGGCGTTGCCCGGCCGCATCCGACGAACCCC
GTGTTCCCTCCACCATGCGCCATACATATGCCCCCGGCGTCGTACCGACG
CGACGGCACCAGGCACAAGGAGGGCGGGCCTCACCACGCCAACGGTGCGT
GCGGCCACGCGCCGCCACCCGGGCCGCCCCCCCACGCCTATCCCTCGTGC
GCTATCCACGGCGGTGGCAACAGAGGCGCGCCTGCCGGGGCGTGCGCGAG
ATGGATGGCCGGCCCGACCGGACCGGGCTCGCCCTTGCCGCTAGGCGGCG
GCGATGACCGGCCTCGCCTGAGGAGGCGCCGCGGACAGCGCGGGCGGAGG
GGGTCCGGCACGGGAGACCCGAGCGGCGACGGCAACGGCAATATGAGCGG
CGGCGTGCCGAGCGAGTACGAGGAGAGGCTGCGCGGCGGCCCCGGGGGGG
CCCAGGAGCAGCACGGTGGCTGCGGTGGCGTGTTCCGCCTGCCGGACCTC
GACCACGGCTACGACATGGGCGGCAGCGGCCTCGCGAACGGCAACCTGTA
CCGCCCCGTGCCGAAGCCGGCCCCGGGCTTTGGCGGCAGCGACCGCAGCA
CCGGCAGCGGGAGCAGCTGGGGGAAGGGGTGCGGCTCCCCGTCGGTGACT
GCTGAGACCCTCAGCAGCACCCCTCCCCTGGAGCTCTCGCAGATGGAGGG
ATTTTCTCCGACGTCTACCTCCAACTCGTTCTTCGGCGGCGGGAGCGTGG
GCAACGGGACGGCGCCGCCGCCGCGAGAAGTGTGGAACCAGGGCCAGTAC
CACCGCCACCCGCGGCCTTCGCCCACCTCTTTTTCGGGGGTGGTCGAAGC
CGAGACGCAGAGGGGCTTCGTTGAGCAGCACAAGCGGCTGCAGCAGCAGC
ACCTGCTGGAGCAGCAGCAGCTGCTGCACCTGCTGCAGCAACAGCGACAG
CAACAGCAGCTGTTCCAGGCCTCGTTCGGTGGTGTGAGACCGCAAGACTT
GCTGGAGGCCTCGGCGCCGCGGCAGCAGCAGCAGTACGAAGAGGGCGTCG
ACGAGCGCGCGACCATCGCGGTGTTGCAGCAGCAGCTCCACCAGCTTCAG
CGTTACTTCGAGAAGAACGAGGGCGGCGGCGCCGGCAGGACCCCGGCCGC
GCTGCCCCCCCCGCCGGGCTCGGGCTTCACGGACAGCAGCGTCGCTCCAG
CTCCGGCTCTCGGCGGCGCAAGCTCCTTCTCCGACGACCTGTCCTTCGCT
GAAGAACGCCTCGCGGCTCTGTCTTGGGGCGACGGCCCCACCGGCGACGG
TGACGCCCATTTGTGCTCGCAGCAAAGCGGCGGCGGTGGAGGAGCGGAGG
TCGCGGATTTGATTTCTCGCCGTGGAGTTCGAGACGAAAGGGAAAGGGAT
AGTCATTCTAGTTCGAGTTTGTGGACGGCGGAATCTTCTCCTATCGTCGG
GTTCGGCTCCTTGGCGCAGGCGTCAGCGGCGTCCCAAGCAGAGGTGAGCA
CAGGTCTACATACATAG

Coding sequence (CDS) from alignment at C-linearis_contig73:144469..147235+

>mRNA_C-linearis_contig73.14938.1 ID=mRNA_C-linearis_contig73.14938.1|Name=mRNA_C-linearis_contig73.14938.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3888bp|location=Sequence derived from alignment at C-linearis_contig73:144469..147235+ (Chordaria linearis ClinC8C monoicous)
CAGCAGCAGCAGCAGCAGCAGCAGCAACCGGGTGGGTTCATTCGGGGAGC
CGACCGGCGCACGCTGCAGAATGTGCGGGTCATCCGCCGCACCCTCGTCT
ACGCCATCGGACTGTCGCCCAACTTCTCCCAGGTTAACACGCTCAAGCTG
CAGCAGCAGCAGCAGCAGCAGCAGCAACCGGGTGGGTTCATTCGGGGAGC
CGACCGGCGCACGCTGCAGAATGTGCGGGTCATCCGCCGCACCCTCGTCT
ACGCCATCGGACTGTCGCCCAACTTCTCCCAGGTTAACACGCTCAAGCTG
CCGGAGTACTTCGGGCAGTACGGCGAGATCACCAAGCTCGTGATCAACCA
TCACCACGGCGTCGCCCCCGACGACCCCCGGCACGGCAGCGCCAGCGCCT
ACATAACGTTCGGCCGGTCGGAGGACGCATGGGCGGCCATCTGCTCGGTC
GACGGCTTCCGCATCATGGGTCGCACCATCCGCGCGAGCTTCGGGACGAC
CAAGTACTGCAACAGCTTCCTGCGCAACCTCCCGTGCAACAACCCGGACT
GCCTGTACCTCCACGAGCTCGGAGACCAGGACGACCGTTTCACTAAGCCG
GAGTACTTCGGGCAGTACGGCGAGATCACCAAGCTCGTGATCAACCATCA
CCACGGCGTCGCCCCCGACGACCCCCGGCACGGCAGCGCCAGCGCCTACA
TAACGTTCGGCCGGTCGGAGGACGCATGGGCGGCCATCTGCTCGGTCGAC
GGCTTCCGCATCATGGGTCGCACCATCCGCGCGAGCTTCGGGACGACCAA
GTACTGCAACAGCTTCCTGCGCAACCTCCCGTGCAACAACCCGGACTGCC
TGTACCTCCACGAGCTCGGAGACCAGGACGACCGTTTCACTAAGGACGAG
GTTCAGGTCGGCCTCGCGCGGCACGGCTCGAGCTTCGCCTTCAAGGAAGA
GGTCCTGGGGACCCGCGAAGACGGCGACGACAAGAACGGCGGCGTTGCCC
GGCCGCATCCGACGAACCCCGTGTTCCCTCCACCATGCGCCATACATATG
CCCCCGGCGTCGTACCGACGCGACGGCACCAGGCACAAGGAGGGCGGGCC
TCACCACGCCAACGGTGCGTGCGGCCACGCGCCGCCACCCGGGCCGCCCC
CCCACGCCTATCCCTCGTGCGCTATCCACGGCGGTGGCAACAGAGGCGCG
CCTGCCGGGGCGTGCGCGAGATGGATGGCCGGCCCGACCGGACCGGGCTC
GCCCTTGCCGCTAGGCGGCGGCGATGACCGGCCTCGCCTGAGGAGGCGCC
GCGGACAGCGCGGGCGGAGGGGGTCCGGCACGGGAGACCCGAGCGGCGAC
GGCAACGGCAATATGAGCGGCGGCGTGCCGAGCGAGTACGAGGAGAGGCT
GCGCGGCGGCCCCGGGGGGGCCCAGGAGCAGCACGGTGGCTGCGGTGGCG
TGTTCCGCCTGCCGGACCTCGACCACGGCTACGACATGGGCGGCAGCGGC
CTCGCGAACGGCAACCTGTACCGCCCCGTGCCGAAGCCGGCCCCGGGCTT
TGGCGGCAGCGACCGCAGCACCGGCAGCGGGAGCAGCTGGGGGAAGGGGT
GCGGCTCCCCGTCGGTGACTGCTGAGACCCTCAGCAGCACCCCTCCCCTG
GAGCTCTCGCAGATGGAGGGATTTTCTCCGACGTCTACCTCCAACTCGTT
CTTCGGCGGCGGGAGCGTGGGCAACGGGACGGCGCCGCCGCCGCGAGAAG
TGTGGAACCAGGGCCAGTACCACCGCCACCCGCGGCCTTCGCCCACCTCT
TTTTCGGGGGTGGTCGAAGCCGAGACGCAGAGGGGCTTCGTTGAGCAGCA
CAAGCGGCTGCAGCAGCAGCACCTGCTGGAGCAGCAGCAGCTGCTGCACC
TGCTGCAGCAACAGCGACAGCAACAGCAGCTGTTCCAGGCCTCGTTCGGT
GGTGACGAGGTTCAGGTCGGCCTCGCGCGGCACGGCTCGAGCTTCGCCTT
CAAGGAAGAGGTCCTGGGGACCCGCGAAGACGGCGACGACAAGAACGGCG
GCGTTGCCCGGCCGCATCCGACGAACCCCGTGTTCCCTCCACCATGCGCC
ATACATATGCCCCCGGCGTCGTACCGACGCGACGGCACCAGGCACAAGGA
GGGCGGGCCTCACCACGCCAACGGTGCGTGCGGCCACGCGCCGCCACCCG
GGCCGCCCCCCCACGCCTATCCCTCGTGCGCTATCCACGGCGGTGGCAAC
AGAGGCGCGCCTGCCGGGGCGTGCGCGAGATGGATGGCCGGCCCGACCGG
ACCGGGCTCGCCCTTGCCGCTAGGCGGCGGCGATGACCGGCCTCGCCTGA
GGAGGCGCCGCGGACAGCGCGGGCGGAGGGGGTCCGGCACGGGAGACCCG
AGCGGCGACGGCAACGGCAATATGAGCGGCGGCGTGCCGAGCGAGTACGA
GGAGAGGCTGCGCGGCGGCCCCGGGGGGGCCCAGGAGCAGCACGGTGGCT
GCGGTGGCGTGTTCCGCCTGCCGGACCTCGACCACGGCTACGACATGGGC
GGCAGCGGCCTCGCGAACGGCAACCTGTACCGCCCCGTGCCGAAGCCGGC
CCCGGGCTTTGGCGGCAGCGACCGCAGCACCGGCAGCGGGAGCAGCTGGG
GGAAGGGGTGCGGCTCCCCGTCGGTGACTGCTGAGACCCTCAGCAGCACC
CCTCCCCTGGAGCTCTCGCAGATGGAGGGATTTTCTCCGACGTCTACCTC
CAACTCGTTCTTCGGCGGCGGGAGCGTGGGCAACGGGACGGCGCCGCCGC
CGCGAGAAGTGTGGAACCAGGGCCAGTACCACCGCCACCCGCGGCCTTCG
CCCACCTCTTTTTCGGGGGTGGTCGAAGCCGAGACGCAGAGGGGCTTCGT
TGAGCAGCACAAGCGGCTGCAGCAGCAGCACCTGCTGGAGCAGCAGCAGC
TGCTGCACCTGCTGCAGCAACAGCGACAGCAACAGCAGCTGTTCCAGGCC
TCGTTCGGTGGTCAGCAGCTCCACCAGCTTCAGCGTTACTTCGAGAAGAA
CGAGGGCGGCGGCGCCGGCAGGACCCCGGCCGCGCTGCCCCCCCCGCCGG
GCTCGGGCTTCACGGACAGCAGCGTCGCTCCAGCTCCGGCTCTCGGCGGC
GCAAGCTCCTTCTCCGACGACCTGTCCTTCGCTGAAGAACGCCTCGCGGC
TCTGTCTTGGGGCGACGGCCCCACCGGCGACGGTGACGCCCATTTGTGCT
CGCAGCAAAGCGGCGGCGGTGGAGGAGCGGAGGTCGCGGATTTGATTTCT
CGCCGTGGAGTTCGAGACGAAAGGGAAAGGGATAGTCATTCTAGTTCGAG
TTTGTGGACGGCGGAATCTTCTCCTATCGTCGGGTTCGGCTCCTTGGCGC
AGGCGTCAGCGGCGTCCCAAGCAGAGGTGAGCACAGGTCTACATACATAG
CAGCAGCTCCACCAGCTTCAGCGTTACTTCGAGAAGAACGAGGGCGGCGG
CGCCGGCAGGACCCCGGCCGCGCTGCCCCCCCCGCCGGGCTCGGGCTTCA
CGGACAGCAGCGTCGCTCCAGCTCCGGCTCTCGGCGGCGCAAGCTCCTTC
TCCGACGACCTGTCCTTCGCTGAAGAACGCCTCGCGGCTCTGTCTTGGGG
CGACGGCCCCACCGGCGACGGTGACGCCCATTTGTGCTCGCAGCAAAGCG
GCGGCGGTGGAGGAGCGGAGGTCGCGGATTTGATTTCTCGCCGTGGAGTT
CGAGACGAAAGGGAAAGGGATAGTCATTCTAGTTCGAGTTTGTGGACGGC
GGAATCTTCTCCTATCGTCGGGTTCGGCTCCTTGGCGCAGGCGTCAGCGG
CGTCCCAAGCAGAGGTGAGCACAGGTCTACATACATAG