mRNA_C-linearis_contig73.14936.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI) HSP 1 Score: 379 bits (972), Expect = 3.080e-126 Identity = 190/242 (78.51%), Postives = 207/242 (85.54%), Query Frame = 3
Query: 210 MGDPTTRTGTSTSNVPAKES-LSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAKAS 932
M + RTGT + V SLTDAYLLLYN ACAVGWNLT+YKIG A+LEGG VRDAV ATH+ V ALQL+STLELVHAFVGLV+SNPMN+FMQV GRDLALFSVVTAFPPVRDSPWVL+MF+AWATSEVIRYPFYAL+IAGMCPP L WLRY+AF+LLYPLGFAGELGTWIVGLPHI+AVGLP VPGLPEGS+IY LYAYIV AF +GAPKLYMHM+RQR KQL GGGK KAS
Sbjct: 1 MSAASARTGTDNTRVATYGGGPSLTDAYLLLYNGACAVGWNLTLYKIGGAILEGGDVRDAVEATHDYVAALQLVSTLELVHAFVGLVKSNPMNVFMQVFGRDLALFSVVTAFPPVRDSPWVLLMFTAWATSEVIRYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGVPGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL-----QGGGKVKAS 237
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA) HSP 1 Score: 169 bits (429), Expect = 5.900e-46 Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 3
Query: 390 NATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAK 926
NAT LVV LQLLSTLELVH +GL R F Q+GGRD+ LF A P VR S ++++ WA SE+IRYP+YA ++ +CP FLHWLRY+AF+LLYPLGFA E+G ++V PH++A + GLPEG L AY++ A +GA L+ +M++ R +QL A G AK
Sbjct: 17 NATP-LVVGLQLLSTLELVHVLLGLTRGGAAQTFAQIGGRDICLFLTAAAEPAVRRSWVAALLYATWAASEIIRYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKAGDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQLRQPAVTGTFTAK 194
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2V0NKZ4_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKZ4_9CHLO) HSP 1 Score: 156 bits (394), Expect = 1.410e-40 Identity = 88/216 (40.74%), Postives = 120/216 (55.56%), Query Frame = 3
Query: 285 AYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKL----YMHMIRQRGKQLGGTAAAGGGK 920
AYL+ YN A A GW + +Y+I AL GGG +A A +Q ++ LE++HA GLV SN +N FMQ GR AL+ + A P + +P +M + W+ EV+RYP+YA + AG CP +L WLRYTAFI +YP G A E+ LP I G+ SV +P + YA + + P L Y ++RQR K+LG AG GK
Sbjct: 7 AYLVAYNAAQAAGWGVCLYQIAGALAAGGGPAEAYRAGAPSAAWMQCIAALEILHAATGLVPSNALNTFMQWLGRSNALYRIAQAIPELHANPAAALMLACWSLGEVVRYPWYAATAAGACPRWLTWLRYTAFIPIYPAGVAAEMVLMWRALPFIRRRGIFSV-AMPNAANFAFDYATFITVVLAAYPYLWWGLYSTLLRQRRKKLGPAEPAGAGK 221
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2R6XKE6_MARPO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XKE6_MARPO) HSP 1 Score: 152 bits (384), Expect = 4.480e-39 Identity = 92/216 (42.59%), Postives = 123/216 (56.94%), Query Frame = 3
Query: 273 SLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLY----MHMIRQRGKQLGGTAAA 908
S+ AYL+ YN A AVGW + + K+G + ++ G A A NLV ALQL + LE +HA GLVRS + MQ GGR L +V+ P + P V ++F+AW+ SEVIRYP YALS G CP +L WLRYTAFILLYP G GE+ + L I L S G+ G + Y VL ++ P L+ +HM +QR +L ++A
Sbjct: 4 SIVKAYLVAYNAAQAVGWLVVLSKLGQSYVDTGDFNHAFVAAGNLVRALQLAAFLEFLHASFGLVRSGALTSLMQWGGRTHVLLAVIAKLPEAQVLPSVFIVFTAWSISEVIRYPQYALSSLGACPRWLLWLRYTAFILLYPAGIYGEMNAMYISLKPIADRQLYS--GI-FGQLLPFTYDKFVLGLLIAYPFLFVILFLHMFKQRRSKLSVRSSA 216
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2P6VMZ8_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMZ8_9CHLO) HSP 1 Score: 144 bits (362), Expect = 5.730e-36 Identity = 90/217 (41.47%), Postives = 114/217 (52.53%), Query Frame = 3
Query: 288 YLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLGGTAAAGGGKAK 926
YLL YN A A GW + + + + G +R A A V QL S LE+VHA +GLV +P+ MQ GR LF VV A P V+ V M +AWA SEV+RYP+YA +AG CP +L WLRYTAFI LYP+G E+ LP I L SV +P Y ++A + P +LY + RQR K+LG A AG K
Sbjct: 11 YLLAYNCAQAAGWAYSGWLLAQHVAATGSLRGAYAAAGEPVRLFQLASALEIVHAALGLVGGSPVTALMQWAGRSNVLFGVVAAVPEVQPGLAVGAMLAAWAASEVVRYPWYAAGVAGACPHWLTWLRYTAFIPLYPIGVVVEMAAVYQALPLIRGRRLRSV-AMPNPFNFAFDYHTFLVALLALYPLLWFRLYSFLFRQRAKKLGPGAEAGSSAKK 226
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: E1Z3Z4_CHLVA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3Z4_CHLVA) HSP 1 Score: 140 bits (354), Expect = 6.710e-35 Identity = 86/209 (41.15%), Postives = 114/209 (54.55%), Query Frame = 3
Query: 276 LTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQL 890
L AYLLLYN A GW +Y + + + + V QL S LE++HA VGLV +P+ MQ GR LF VV A P V+++ V M AWA SEV RYP+YA ++ G CP +L W+RYTAFI LYP+G GE+ + LP I+ GL SVP LP + Y ++A + P +LY + RQR K+L
Sbjct: 6 LPKAYLLLYNVAQFGGWAFCLYHLLNHVDTTRSLEGTYAVAGDAVRLFQLASALEILHAAVGLVGGSPVTALMQWAGRSNVLFGVVGAVPEVQNTAAVGAMLLAWALSEVTRYPWYAANLVGACPRWLTWIRYTAFIPLYPVGVVGEMWSVYQALPFIKQRGLRSVP-LPNAANFAFDYPTFLVALMCVYPLLWFQLYSFLFRQRRKKL 213
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2P6TVL7_CHLSO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVL7_CHLSO) HSP 1 Score: 150 bits (380), Expect = 7.190e-35 Identity = 86/206 (41.75%), Postives = 119/206 (57.77%), Query Frame = 3
Query: 321 GWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLGGTAAAGGGKAK 926
GW + +Y++G ++ + A ++V QL S LE++HA +GLV +P+ MQ GR LF VV A P V++ P V MF AWA SE+IRYP+YA S+AG CP +L WLRYTAFI LYP+G GE+ + LP I+A GL S+ LP + Y ++ + P +LY + RQR K+LG AA G K +
Sbjct: 618 GWAVALYRVGGHVIATRSLEGAYTVAGDVVGCFQLASALEILHAALGLVGGSPLTALMQWAGRSNVLFGVVAAVPEVQNRPAVGAMFLAWALSEIIRYPWYAASLAGACPHWLTWLRYTAFIGLYPVGVLGEMKSVFDALPFIKARGLRSL-ALPNAANWGFDYHTFLVVLLCLYPFLWFRLYAFLFRQRRKKLGAPAAVAGSKKR 822
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: UPI001CFA8DD4 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA8DD4) HSP 1 Score: 140 bits (352), Expect = 1.320e-34 Identity = 82/217 (37.79%), Postives = 121/217 (55.76%), Query Frame = 3
Query: 246 SNVPAKESLSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLG-FAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLG 893
+ VP LS YL YN+ A+GW ++++ + + L + A +T L+ LQ+ S LE++H VG+V S + FMQ GGR L S+V V+ P V + F AW+ SEVIRYPFYAL+ G CP ++ +LRYTAFI+LYP+G F GE+ LP I+ L + + Y +++ + KLY+H+ +QRG +LG
Sbjct: 3 TTVPTMSQLS--GLYLFTYNSLQALGWAVSLFSLLSNFLSTNSIHGAYESTGQLIWLLQICSFLEVIHGVVGIVPSGVLFPFMQWGGRTLFFLSIVRTIDEVQKLPSVFITFIAWSLSEVIRYPFYALNSIGTCPSWITYLRYTAFIVLYPIGLFPGEMWLMYEALPCIKKKNLFADFFGVLPFSYYNFLRVMLVCYPFLWLKLYLHLFKQRGSKLG 217
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A3B5ZYJ9_WHEAT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=8 Tax=Pooideae TaxID=147368 RepID=A0A3B5ZYJ9_WHEAT) HSP 1 Score: 139 bits (351), Expect = 1.550e-34 Identity = 83/215 (38.60%), Postives = 123/215 (57.21%), Query Frame = 3
Query: 288 YLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFA-GELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAKA 929
YLL YN+ A+GW+L + ++ L VR A A +L+ LQ + LE VHA VGLV ++P F+Q GGR + +++ P V+ SP V + F AW+ SEVIRY YAL+ +CP ++ +LRYTAFI LYP+G GE+ T LP ++ GL S + ++ ++L + + KLY+H+ +QR +LG GG K +A
Sbjct: 8 YLLAYNSVQAIGWSLALLRLLPCLAPPVSVRPAYAAAGDLICFLQTCAVLETVHAAVGLVPTSPFLAFLQWGGRTHFILALLRQIPEVQGSPSVFITFMAWSISEVIRYSHYALTTLKVCPAWMTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERGLYSGFFAKFSMSYHSFLVGVLLCYPLLWLKLYLHVFKQRKSKLG----KGGRKKRA 218
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A250XGM8_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGM8_9CHLO) HSP 1 Score: 139 bits (351), Expect = 1.730e-34 Identity = 80/216 (37.04%), Postives = 125/216 (57.87%), Query Frame = 3
Query: 258 AKESLSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLG 893
++ S +LT YL +YN A A GW+L + + A+ +G G + + + V QL S +E++HA + +V S+ + FMQ GR L +++ + P V+ + +M + WA SEVIRYP+YAL+ +CP L WLRYTAFI LYP+G E+ + LP+++ G S+ G+P + I Y+ + A +V P LY ++RQR K+LG
Sbjct: 3 SRASATLT-CYLFVYNIAQATGWSLCLVSLLIAMSQGAGPQVLIQESGKFVRVFQLASAMEILHAAIKIVPSSAVLAFMQWAGRSHVLLAILLSVPEVQKHAFGPLMLAVWAASEVIRYPWYALNSIDICPQALTWLRYTAFIPLYPVGVVCEMALMALALPYLKEDGRWSI-GMPNKANIAFEYSTFIQALLVCYPFLWWGLYSSLLRQRNKKLG 216 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14936.1 >prot_C-linearis_contig73.14936.1 ID=prot_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=242bp MGDPTTRTGTSTSNVPAKESLSLTDAYLLLYNTACAVGWNLTMYKIGTALback to top mRNA from alignment at C-linearis_contig73:130698..134419+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14936.1 ID=mRNA_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3722bp|location=Sequence derived from alignment at C-linearis_contig73:130698..134419+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:130698..134419+ >mRNA_C-linearis_contig73.14936.1 ID=mRNA_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at C-linearis_contig73:130698..134419+ (Chordaria linearis ClinC8C monoicous)back to top |