mRNA_C-linearis_contig73.14936.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14936.1
Unique NamemRNA_C-linearis_contig73.14936.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: D7FX13_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX13_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 3.080e-126
Identity = 190/242 (78.51%), Postives = 207/242 (85.54%), Query Frame = 3
Query:  210 MGDPTTRTGTSTSNVPAKES-LSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAKAS 932
            M   + RTGT  + V       SLTDAYLLLYN ACAVGWNLT+YKIG A+LEGG VRDAV ATH+ V ALQL+STLELVHAFVGLV+SNPMN+FMQV GRDLALFSVVTAFPPVRDSPWVL+MF+AWATSEVIRYPFYAL+IAGMCPP L WLRY+AF+LLYPLGFAGELGTWIVGLPHI+AVGLP VPGLPEGS+IY LYAYIV AF +GAPKLYMHM+RQR KQL      GGGK KAS
Sbjct:    1 MSAASARTGTDNTRVATYGGGPSLTDAYLLLYNGACAVGWNLTLYKIGGAILEGGDVRDAVEATHDYVAALQLVSTLELVHAFVGLVKSNPMNVFMQVFGRDLALFSVVTAFPPVRDSPWVLLMFTAWATSEVIRYPFYALNIAGMCPPVLQWLRYSAFVLLYPLGFAGELGTWIVGLPHIKAVGLPGVPGLPEGSSIYVLYAYIVFAFAIGAPKLYMHMLRQRKKQL-----QGGGKVKAS 237          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A835Z8Y0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.900e-46
Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 3
Query:  390 NATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAK 926
            NAT  LVV LQLLSTLELVH  +GL R      F Q+GGRD+ LF    A P VR S    ++++ WA SE+IRYP+YA ++  +CP FLHWLRY+AF+LLYPLGFA E+G ++V  PH++A     + GLPEG     L AY++ A  +GA  L+ +M++ R +QL   A  G   AK
Sbjct:   17 NATP-LVVGLQLLSTLELVHVLLGLTRGGAAQTFAQIGGRDICLFLTAAAEPAVRRSWVAALLYATWAASEIIRYPYYATNLLEICPDFLHWLRYSAFMLLYPLGFAAEVGCFVVAYPHMKAGDKYRIEGLPEGGQFAVLGAYMLFAHAIGALTLFKYMLKARKRQLRQPAVTGTFTAK 194          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2V0NKZ4_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKZ4_9CHLO)

HSP 1 Score: 156 bits (394), Expect = 1.410e-40
Identity = 88/216 (40.74%), Postives = 120/216 (55.56%), Query Frame = 3
Query:  285 AYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKL----YMHMIRQRGKQLGGTAAAGGGK 920
            AYL+ YN A A GW + +Y+I  AL  GGG  +A  A       +Q ++ LE++HA  GLV SN +N FMQ  GR  AL+ +  A P +  +P   +M + W+  EV+RYP+YA + AG CP +L WLRYTAFI +YP G A E+      LP I   G+ SV  +P  +     YA  +   +   P L    Y  ++RQR K+LG    AG GK
Sbjct:    7 AYLVAYNAAQAAGWGVCLYQIAGALAAGGGPAEAYRAGAPSAAWMQCIAALEILHAATGLVPSNALNTFMQWLGRSNALYRIAQAIPELHANPAAALMLACWSLGEVVRYPWYAATAAGACPRWLTWLRYTAFIPIYPAGVAAEMVLMWRALPFIRRRGIFSV-AMPNAANFAFDYATFITVVLAAYPYLWWGLYSTLLRQRRKKLGPAEPAGAGK 221          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2R6XKE6_MARPO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XKE6_MARPO)

HSP 1 Score: 152 bits (384), Expect = 4.480e-39
Identity = 92/216 (42.59%), Postives = 123/216 (56.94%), Query Frame = 3
Query:  273 SLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLY----MHMIRQRGKQLGGTAAA 908
            S+  AYL+ YN A AVGW + + K+G + ++ G    A  A  NLV ALQL + LE +HA  GLVRS  +   MQ GGR   L +V+   P  +  P V ++F+AW+ SEVIRYP YALS  G CP +L WLRYTAFILLYP G  GE+    + L  I    L S  G+  G  +   Y   VL  ++  P L+    +HM +QR  +L   ++A
Sbjct:    4 SIVKAYLVAYNAAQAVGWLVVLSKLGQSYVDTGDFNHAFVAAGNLVRALQLAAFLEFLHASFGLVRSGALTSLMQWGGRTHVLLAVIAKLPEAQVLPSVFIVFTAWSISEVIRYPQYALSSLGACPRWLLWLRYTAFILLYPAGIYGEMNAMYISLKPIADRQLYS--GI-FGQLLPFTYDKFVLGLLIAYPFLFVILFLHMFKQRRSKLSVRSSA 216          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2P6VMZ8_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMZ8_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 5.730e-36
Identity = 90/217 (41.47%), Postives = 114/217 (52.53%), Query Frame = 3
Query:  288 YLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLGGTAAAGGGKAK 926
            YLL YN A A GW  + + +   +   G +R A  A    V   QL S LE+VHA +GLV  +P+   MQ  GR   LF VV A P V+    V  M +AWA SEV+RYP+YA  +AG CP +L WLRYTAFI LYP+G   E+      LP I    L SV  +P        Y   ++A +   P    +LY  + RQR K+LG  A AG    K
Sbjct:   11 YLLAYNCAQAAGWAYSGWLLAQHVAATGSLRGAYAAAGEPVRLFQLASALEIVHAALGLVGGSPVTALMQWAGRSNVLFGVVAAVPEVQPGLAVGAMLAAWAASEVVRYPWYAAGVAGACPHWLTWLRYTAFIPLYPIGVVVEMAAVYQALPLIRGRRLRSV-AMPNPFNFAFDYHTFLVALLALYPLLWFRLYSFLFRQRAKKLGPGAEAGSSAKK 226          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: E1Z3Z4_CHLVA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z3Z4_CHLVA)

HSP 1 Score: 140 bits (354), Expect = 6.710e-35
Identity = 86/209 (41.15%), Postives = 114/209 (54.55%), Query Frame = 3
Query:  276 LTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQL 890
            L  AYLLLYN A   GW   +Y +   +     +        + V   QL S LE++HA VGLV  +P+   MQ  GR   LF VV A P V+++  V  M  AWA SEV RYP+YA ++ G CP +L W+RYTAFI LYP+G  GE+ +    LP I+  GL SVP LP  +     Y   ++A +   P    +LY  + RQR K+L
Sbjct:    6 LPKAYLLLYNVAQFGGWAFCLYHLLNHVDTTRSLEGTYAVAGDAVRLFQLASALEILHAAVGLVGGSPVTALMQWAGRSNVLFGVVGAVPEVQNTAAVGAMLLAWALSEVTRYPWYAANLVGACPRWLTWIRYTAFIPLYPVGVVGEMWSVYQALPFIKQRGLRSVP-LPNAANFAFDYPTFLVALMCVYPLLWFQLYSFLFRQRRKKL 213          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A2P6TVL7_CHLSO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVL7_CHLSO)

HSP 1 Score: 150 bits (380), Expect = 7.190e-35
Identity = 86/206 (41.75%), Postives = 119/206 (57.77%), Query Frame = 3
Query:  321 GWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLGGTAAAGGGKAK 926
            GW + +Y++G  ++    +  A     ++V   QL S LE++HA +GLV  +P+   MQ  GR   LF VV A P V++ P V  MF AWA SE+IRYP+YA S+AG CP +L WLRYTAFI LYP+G  GE+ +    LP I+A GL S+  LP  +     Y   ++  +   P    +LY  + RQR K+LG  AA  G K +
Sbjct:  618 GWAVALYRVGGHVIATRSLEGAYTVAGDVVGCFQLASALEILHAALGLVGGSPLTALMQWAGRSNVLFGVVAAVPEVQNRPAVGAMFLAWALSEIIRYPWYAASLAGACPHWLTWLRYTAFIGLYPVGVLGEMKSVFDALPFIKARGLRSL-ALPNAANWGFDYHTFLVVLLCLYPFLWFRLYAFLFRQRRKKLGAPAAVAGSKKR 822          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: UPI001CFA8DD4 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA8DD4)

HSP 1 Score: 140 bits (352), Expect = 1.320e-34
Identity = 82/217 (37.79%), Postives = 121/217 (55.76%), Query Frame = 3
Query:  246 SNVPAKESLSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLG-FAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLG 893
            + VP    LS    YL  YN+  A+GW ++++ + +  L    +  A  +T  L+  LQ+ S LE++H  VG+V S  +  FMQ GGR L   S+V     V+  P V + F AW+ SEVIRYPFYAL+  G CP ++ +LRYTAFI+LYP+G F GE+      LP I+   L +        + Y     +++ +     KLY+H+ +QRG +LG
Sbjct:    3 TTVPTMSQLS--GLYLFTYNSLQALGWAVSLFSLLSNFLSTNSIHGAYESTGQLIWLLQICSFLEVIHGVVGIVPSGVLFPFMQWGGRTLFFLSIVRTIDEVQKLPSVFITFIAWSLSEVIRYPFYALNSIGTCPSWITYLRYTAFIVLYPIGLFPGEMWLMYEALPCIKKKNLFADFFGVLPFSYYNFLRVMLVCYPFLWLKLYLHLFKQRGSKLG 217          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A3B5ZYJ9_WHEAT (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=8 Tax=Pooideae TaxID=147368 RepID=A0A3B5ZYJ9_WHEAT)

HSP 1 Score: 139 bits (351), Expect = 1.550e-34
Identity = 83/215 (38.60%), Postives = 123/215 (57.21%), Query Frame = 3
Query:  288 YLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFA-GELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAKA 929
            YLL YN+  A+GW+L + ++   L     VR A  A  +L+  LQ  + LE VHA VGLV ++P   F+Q GGR   + +++   P V+ SP V + F AW+ SEVIRY  YAL+   +CP ++ +LRYTAFI LYP+G   GE+ T    LP ++  GL S        + ++    ++L + +   KLY+H+ +QR  +LG     GG K +A
Sbjct:    8 YLLAYNSVQAIGWSLALLRLLPCLAPPVSVRPAYAAAGDLICFLQTCAVLETVHAAVGLVPTSPFLAFLQWGGRTHFILALLRQIPEVQGSPSVFITFMAWSISEVIRYSHYALTTLKVCPAWMTYLRYTAFIPLYPIGVGPGEMWTMYQALPFVKERGLYSGFFAKFSMSYHSFLVGVLLCYPLLWLKLYLHVFKQRKSKLG----KGGRKKRA 218          
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Match: A0A250XGM8_9CHLO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGM8_9CHLO)

HSP 1 Score: 139 bits (351), Expect = 1.730e-34
Identity = 80/216 (37.04%), Postives = 125/216 (57.87%), Query Frame = 3
Query:  258 AKESLSLTDAYLLLYNTACAVGWNLTMYKIGTALLEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGRDLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFLHWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYALYAYIVLAFVVGAP----KLYMHMIRQRGKQLG 893
            ++ S +LT  YL +YN A A GW+L +  +  A+ +G G +  +  +   V   QL S +E++HA + +V S+ +  FMQ  GR   L +++ + P V+   +  +M + WA SEVIRYP+YAL+   +CP  L WLRYTAFI LYP+G   E+    + LP+++  G  S+ G+P  + I   Y+  + A +V  P     LY  ++RQR K+LG
Sbjct:    3 SRASATLT-CYLFVYNIAQATGWSLCLVSLLIAMSQGAGPQVLIQESGKFVRVFQLASAMEILHAAIKIVPSSAVLAFMQWAGRSHVLLAILLSVPEVQKHAFGPLMLAVWAASEVIRYPWYALNSIDICPQALTWLRYTAFIPLYPVGVVCEMALMALALPYLKEDGRWSI-GMPNKANIAFEYSTFIQALLVCYPFLWWGLYSSLLRQRNKKLG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX13_ECTSI3.080e-12678.51Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835Z8Y0_9STRA5.900e-4649.16Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2V0NKZ4_9CHLO1.410e-4040.74Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2R6XKE6_MARPO4.480e-3942.59Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2P6VMZ8_9CHLO5.730e-3641.47Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
E1Z3Z4_CHLVA6.710e-3541.15Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2P6TVL7_CHLSO7.190e-3541.75Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
UPI001CFA8DD41.320e-3437.79very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A3B5ZYJ9_WHEAT1.550e-3438.60Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A250XGM8_9CHLO1.730e-3437.04Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:130698..134419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue8.1e-102
Seed eggNOG ortholog2880.D7FX13
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
Ec32 ortholog descriptionPutative tyrosine phosphatase
Ec32 orthologEc-10_003910.1
EC4.2.1.134
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons5
Model size1702
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.6705043-UTR-C-linearis_contig73:130697..1309061622930398.6705043-UTR-C-linearis_contig73:130697..130906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 130698..130906 +
1690881049.4660006-UTR-C-linearis_contig73:130697..1309061690881049.4660006-UTR-C-linearis_contig73:130697..130906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 130698..130906 +
1622930398.7754111-UTR-C-linearis_contig73:133652..1344191622930398.7754111-UTR-C-linearis_contig73:133652..134419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 133653..134419 +
1690881049.5370812-UTR-C-linearis_contig73:133652..1344191690881049.5370812-UTR-C-linearis_contig73:133652..134419Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 133653..134419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.6936686-CDS-C-linearis_contig73:130906..1311611622930398.6936686-CDS-C-linearis_contig73:130906..131161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 130907..131161 +
1690881049.4787948-CDS-C-linearis_contig73:130906..1311611690881049.4787948-CDS-C-linearis_contig73:130906..131161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 130907..131161 +
1622930398.7153459-CDS-C-linearis_contig73:131815..1318481622930398.7153459-CDS-C-linearis_contig73:131815..131848Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 131816..131848 +
1690881049.4919121-CDS-C-linearis_contig73:131815..1318481690881049.4919121-CDS-C-linearis_contig73:131815..131848Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 131816..131848 +
1622930398.7299511-CDS-C-linearis_contig73:132205..1323181622930398.7299511-CDS-C-linearis_contig73:132205..132318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 132206..132318 +
1690881049.503671-CDS-C-linearis_contig73:132205..1323181690881049.503671-CDS-C-linearis_contig73:132205..132318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 132206..132318 +
1622930398.7432806-CDS-C-linearis_contig73:132645..1327871622930398.7432806-CDS-C-linearis_contig73:132645..132787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 132646..132787 +
1690881049.5125277-CDS-C-linearis_contig73:132645..1327871690881049.5125277-CDS-C-linearis_contig73:132645..132787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 132646..132787 +
1622930398.7630517-CDS-C-linearis_contig73:133469..1336521622930398.7630517-CDS-C-linearis_contig73:133469..133652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 133470..133652 +
1690881049.527468-CDS-C-linearis_contig73:133469..1336521690881049.527468-CDS-C-linearis_contig73:133469..133652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 133470..133652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14936.1prot_C-linearis_contig73.14936.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 130907..133652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14936.1

>prot_C-linearis_contig73.14936.1 ID=prot_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=242bp
MGDPTTRTGTSTSNVPAKESLSLTDAYLLLYNTACAVGWNLTMYKIGTAL
LEGGGVRDAVNATHNLVVALQLLSTLELVHAFVGLVRSNPMNIFMQVGGR
DLALFSVVTAFPPVRDSPWVLVMFSAWATSEVIRYPFYALSIAGMCPPFL
HWLRYTAFILLYPLGFAGELGTWIVGLPHIEAVGLPSVPGLPEGSTIYAL
YAYIVLAFVVGAPKLYMHMIRQRGKQLGGTAAAGGGKAKAS*
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mRNA from alignment at C-linearis_contig73:130698..134419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14936.1 ID=mRNA_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3722bp|location=Sequence derived from alignment at C-linearis_contig73:130698..134419+ (Chordaria linearis ClinC8C monoicous)
GGTAATCGAGAGGGCCACCGAGAGGGTACTATAGCAGTAGTCAAGCAAGG TACGGACATCTGCACCCCTCTTGAAAAAATTACGGTGTGCCCTGGTCGTC TGGTTTTCCTCTCTGTTCGTGAAAGATTGGTATTTTGAAGGCTTAGGAAC ACCTCGGACGGAGTCAACACAGAAAGAGGCAGCGGCAGAGATAGCAACAG CGCGGAGAGATGGGCGACCCAACTACCAGGACTGGCACGAGCACCAGCAA TGTTCCTGCGAAGGAAAGCCTCTCTCTTACGGATGCCTACCTACTGCTCT ACAACACGGCTTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGC ACCGCGCTGCTGGAGGGCGGCGGCGTGAGGGACGCTGTCAACGCGACGCA CAACCTTGTGGTGGCGCTGCAGCTGCTGTCCACGCTTGAGCTCGTTCACG CCTTCGTCGGTCTGGTGAGAGGAATGAGGAAGGCGTCAAATGGGCAAGAT TTAGGAGGGTATCTGCTTTTCGGCCTGCAGAGTTGCAAATTCGCAGTGCT GTCCTCTTCAACTTGTATGAACGGGCATGTAGCACATTGGACCCCGCAAC AAAGATGACACTGCTGTGCGCAGGCCTCTCTCCTTTTCTCTCCAACAAGC AAGGCGAAATGCTGTGTGTACGCCAAATGTGCTGTATGCTTCCTGATCTT GTCGTCGCTGAACCTCTCTGCTGTCTAGATGTGTAGACTAGATGCGTTCA TGCGGAACACGTCGCCCGGTGCCTTTGCCCGCTGGATGGTTGCAGAAAGA TAGGGTTGCCGAAGCTTTCGCATGCGGTAGTCTACACTTCCCGCCAGCAC TTAAGCTTCTCCCATCAGCCAAGACACACTGACCGTAGAGCGGGGCTGGG CATTCAGGGGATCAATCGGTGTCCGTTCACGTGGAGAGGCATGTGGGTTG CAATCGAGGTTGGAACGGCAGCCAAGGGGTTGTAGTGAGCGGTCGAAAGT TGTGCCGCCGATGGTTGACGAGATCTCGAGGATCGAGAAATGGCCGCTGA CTTTCCGCGATGCTTCCCCGCCCGCCGCCGCTGCCCCTGCCACCGTTGGC ACAAATATGTAAACGAAGGTCAGGAGCAACCCGATGAATATTTTCATGCA GGTGAGGAGTGGTACGTGGGGTATGCCTGCGTTGGCGGCTTTGGCTGACG GCTTGCAGAGCATGCCTTCTCTTCAAGTGCCCGATCACAGCCAATTGTTT GTCAGGGTCGAGAGATGAAGATATCCCAACCAGACCCCAAGCATTAATCT ACCGGCGCTTTTCTCTGCGCAATCTCTTCGTGGAATTATTGATGTGACGC ATATATTCCCGCTGCACGCGCTCTCCACACCCATGCAACCCCCGGCGGGA TCGACTGACCAAAAAACCCTTGCTGGTGTTAATTTCCCCCGCGCGTCGAT CCCTGCCTCGCCTCCCCCCGTTTTTCCCGCTTGCACGCTCCTTGCAACTT TGCAAAAGGTTGGGGGACGTGATCTGGCGCTGTTCTCGGTAGTGACGGCC TTTCCGCCGGTGCGGGATAGCCCCTGGGTGCTCGTCATGTTCTCGGCGTG GGCGACATCGGAGGTTATCAGGTACGGTGGCTAGATCACGAAAGGCAGGG CAAGTTGGGGAGTACATGCACGCCGTCAGCGCCACTTTTTCCGTTTTTTG CGCGGCACTGCCGGCGCTTCGTCCACAACCAGAAGCTCGGGCTATGAATA TCACCGCTTTGGCTACGCTGCCCTCCTCAAGCGGCACGCCGAGGACAGCA GCAGGACACATGATCCATCGTGCAGCATTGCTCGCGCTGCGAGATCTGGA GTGGTACCTCCTAGGTTTGCTCACGTGCAAGTGCTTCCTCCGACCGTGCT TGATCTTTTGGTTCGTTTTCGTTCCAACCCCCCTTTCCCCTGCTCCAGAT ACCCGTTCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCGTTCCTGCAC TGGCTCCGGTACACGGCGTTCATACTTCTTTACCCCTTGGGCTTCGCTGG AGAGCTTGGAACGTGGATTGTAGGACTGCCGCACATAGAGGTGGGTCGGA GGTCGAGTGGGGTAGGTAGGTTCCAGCCAGCCCATGCCGTTGCCGCCAAA CCTGCTCCAAAAGCTCTAGAGCTCCAGCTGTCCCGCGAGGGATTTGGCGC TGTCGTGTGCTCGTTCCTGCCGCACGGTGTGTGTGTGGCTTTGTGTGATG CAATGTTTCGAAGTTGTAGCGCTGCGTGATGTTACATTTGTAGGAATGTT TTTTGGGCGTTAGCTGTAGGGTTAGGTGCAGACGACGCCGTCAGGGTATG TGTTTTTGCTAGGGCTGTGTATCGGAGCCGATACGTTTGATATTATCGGT CGATATATATCTATCACCAGCCGGGGAGCGTAAAGGGGCTCGTACAGGCG AGCTTCGAGCGCGTTCGCGCCTCGTGCTCGCCGATATTTGTTCGATAGAT CGGTGTAGCCGATCTATCGAACAAATATCGTTATATCGGCTGCGCCGATC TTCGATATATATCATATCGTTTAAACCTGCCGATACATAGCCCTAGTTTT TGCCCTTGGCAGAGGTCGGAGGCCCTCAACTGCGGTTGCCGCTTGATCGA AATCGCTGTTCCTCTTGGTTTATTTTTTGCCGCTGCCTGAAGAAAGCATT CCCTGTGGCTGCTCCTTCGTGCTTGTCATTTGACGCCGCGGGCGAACACC CCCCCTCCCACAACGAAAGCAGGCAGTCGGCCTGCCTAGTGTACCTGGCC TTCCGGAGGGCTCCACGATCTACGCCCTGTACGCTTACATCGTTTTAGCG TTCGTGGTGGGCGCGCCCAAGCTCTACATGCACATGATCCGCCAGCGCGG CAAGCAATTGGGGGGAACAGCGGCGGCGGGGGGCGGGAAGGCCAAGGCTT CATAACAGCCTTGGCGTCCTAGATTTTTATAGAGTAATGTAGATGGTACT GTAGCGAGGAAGGGACTCTGCTGAAGGCGTCAGCGCTGCGTCCTTTCCGT CTAGACATACATAGTAGTGGTGTGATTTTTTGGAGCAGTTTCAAACTTAG TCCGTGGCGAATCCGCGTCCGTACTCGTCTACGCTCTTGTGCTTGAGTCC CTCCCTCAAAAGCTTCTGGCACGAGAGGTTCGACGAGCACGGGCGTGAGC CCCCACGGACGAAGCTTGAAACTGATCCCATTTGGCTTTCAAGCATGTGC CTTCTAGGTTGGTGCACGTGAGGTTGTGGGCACCAGTGCGGCAGGGACAC CGTGTATATTTGTGGCTACTAGAGACGGCGCGTCGACAGGGCGTATGTGG CCCAACCAAGCCATCGCTTTTTCTCGGCGAGGTGGCTACTGAGTGCTTCT TGCACTGAAACGTTGCAGTGAAACAAAGCACGCAGTTCGTATCCACCCAA CCAAGATCAGCCGTGGCTTGATTTTGGCCACAATGCCGATTGTTCGTGAC GGCTATGTGGTGGTCTCTTGCATCAATGAGGGCCACCACACGCTCGTTTT GGCCTCGATGTTTTATGCACGTGTCTTACTCGGGTGTGGTCCATGAAAAG CTGAAACATGTGGTTATCCGGTACAGCAGTATCTACTCTGCGCATCCTCT GGAAGTAGTCTTACCCCCCCCCCCAAGAACACCTTCGGTCGTGTGTCGCG GCGATTCGCATCAGCCAGAAGC
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Coding sequence (CDS) from alignment at C-linearis_contig73:130698..134419+

>mRNA_C-linearis_contig73.14936.1 ID=mRNA_C-linearis_contig73.14936.1|Name=mRNA_C-linearis_contig73.14936.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at C-linearis_contig73:130698..134419+ (Chordaria linearis ClinC8C monoicous)
ATGGGCGACCCAACTACCAGGACTGGCACGAGCACCAGCAATGTTCCTGC
GAAGGAAAGCCTCTCTCTTACGGATGCCTACCTACTGCTCTACAACACGG
CTTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGCACCGCGCTG
CTGGAGGGCGGCGGCGTGAGGGACGCTGTCAACGCGACGCACAACCTTGT
GGTGGCGCTGCAGCTGCTGTCCACGCTTGAGCTCGTTCACGCCTTCGTCG
GTCTGATGGGCGACCCAACTACCAGGACTGGCACGAGCACCAGCAATGTT
CCTGCGAAGGAAAGCCTCTCTCTTACGGATGCCTACCTACTGCTCTACAA
CACGGCTTGCGCGGTGGGGTGGAACTTGACCATGTACAAGATCGGCACCG
CGCTGCTGGAGGGCGGCGGCGTGAGGGACGCTGTCAACGCGACGCACAAC
CTTGTGGTGGCGCTGCAGCTGCTGTCCACGCTTGAGCTCGTTCACGCCTT
CGTCGGTCTGGTCAGGAGCAACCCGATGAATATTTTCATGCAGGTCAGGA
GCAACCCGATGAATATTTTCATGCAGGTTGGGGGACGTGATCTGGCGCTG
TTCTCGGTAGTGACGGCCTTTCCGCCGGTGCGGGATAGCCCCTGGGTGCT
CGTCATGTTCTCGGCGTGGGCGACATCGGAGGTTATCAGGTTGGGGGACG
TGATCTGGCGCTGTTCTCGGTAGTGACGGCCTTTCCGCCGGTGCGGGATA
GCCCCTGGGTGCTCGTCATGTTCTCGGCGTGGGCGACATCGGAGGTTATC
AGATACCCGTTCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCGTTCCT
GCACTGGCTCCGGTACACGGCGTTCATACTTCTTTACCCCTTGGGCTTCG
CTGGAGAGCTTGGAACGTGGATTGTAGGACTGCCGCACATAGAGATACCC
GTTCTACGCCCTCAGCATCGCGGGGATGTGCCCCCCGTTCCTGCACTGGC
TCCGGTACACGGCGTTCATACTTCTTTACCCCTTGGGCTTCGCTGGAGAG
CTTGGAACGTGGATTGTAGGACTGCCGCACATAGAGGCAGTCGGCCTGCC
TAGTGTACCTGGCCTTCCGGAGGGCTCCACGATCTACGCCCTGTACGCTT
ACATCGTTTTAGCGTTCGTGGTGGGCGCGCCCAAGCTCTACATGCACATG
ATCCGCCAGCGCGGCAAGCAATTGGGGGGAACAGCGGCGGCGGGGGGCGG
GAAGGCCAAGGCTTCATAAGCAGTCGGCCTGCCTAGTGTACCTGGCCTTC
CGGAGGGCTCCACGATCTACGCCCTGTACGCTTACATCGTTTTAGCGTTC
GTGGTGGGCGCGCCCAAGCTCTACATGCACATGATCCGCCAGCGCGGCAA
GCAATTGGGGGGAACAGCGGCGGCGGGGGGCGGGAAGGCCAAGGCTTCAT
AA
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