mRNA_C-linearis_contig73.14934.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE) HSP 1 Score: 221 bits (564), Expect = 9.120e-68 Identity = 100/160 (62.50%), Postives = 131/160 (81.88%), Query Frame = 1
Query: 451 PVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHGRFQHQRTAMLRRQAS 930
PVP GLRW L+LWNIACI SL+VT VW TEDYVRQV+QGVKNFD+QAHGL+ FFMLVDQLLIAD +KL HM+ +Q+YG++Y+ FS++WFY PE++KYLY+D LDWD+NR QAC+ G ++ V+VP+A L+H ++RLREAL+ R + + A L+R+ S
Sbjct: 92 PVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHS 251
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI) HSP 1 Score: 216 bits (550), Expect = 8.600e-67 Identity = 95/146 (65.07%), Postives = 122/146 (83.56%), Query Frame = 1
Query: 451 PVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHGR 888
PVP GLRW L+LWNIACI SL+VT VW +EDYVRQV+QG KNFD+QAHGL+ FFMLVDQLLIAD FKL HM+ +Q+YG++Y+ FS++WFY PE++KYLY+D LDW +NR QAC+ G ++ V+VP+A L+H ++RLREAL+GR
Sbjct: 10 PVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGR 155
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.210e-53 Identity = 118/313 (37.70%), Postives = 162/313 (51.76%), Query Frame = 1
Query: 1 TRYG-TIIMGGTELRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQLTFWTWDVCTGYFIISTVAALVCWRAMRRN--SGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREAL-HGRFQHQRTAMLRRQA 927
TR+G T+ + R GTSRFL QG FV YK LA YF +WA++W V+ + LT WTW T YF++S ++A +CWRA+ SGPV R+G P PS T G PVP LR L LW+ ACI SL+V +++ Y + D QAH + ML+DQ L+ADEFKL++++ Q +GVIY+ F++ W+YLAP++D+ +Y ILDW+ N ACI+A ++ V PL LVHF ++RLRE + H R A QA
Sbjct: 3 TRHGGTVPLDDETPRIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRF--LTHWTWYATTTYFVVSALSAFLCWRAIAVTVASGPV-----------------RDGDPAFDAPTSSRPSDRT-------------------GSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDK---LTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQA 273
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.450e-28 Identity = 86/283 (30.39%), Postives = 142/283 (50.18%), Query Frame = 1
Query: 37 LRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQLTFWTWDVCTGYFIISTVAALVCWRAMRRNSGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHG 885
LRA TSRFL G FVA+K + AYF W WP + + T+W W T YF +S A +R R S A +P +A G G D P + + + TP T P+ + L WN+AC+GSL V +++++ Y + + D+ AH LI F M+ DQ+L+A F+++ M ++V+ + Y+V+S+LW++L E L ILDWD++ +A ++ + V++P +++H+ ++RLRE+++
Sbjct: 13 LRAATSRFLKPGPFVAFKGLFVAYFLIWCFLWPL--DYTSMYLFA-TYWVWYTGTAYFALSFATACAHFR---RWSAATQA----RAPDNGSA-----GGGSDRPGPSWSNLTGDVSTPALRTRI------------HPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTP---ITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFLEQE----LIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIFRLRESIYA 261
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.690e-25 Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query: 439 GGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALH 882
G PVP LR L+LW+ ACIGSL+V +++ +L+DQ L+ADEFKL++++ Q +GVIY+ F++ W+YLAP++D+ +Y ILDW+ N ACI+A ++ V PL LVH L+RLRE+++
Sbjct: 10 GSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGA------------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI001B88D388 (uncharacterized protein LOC121369499 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D388) HSP 1 Score: 78.6 bits (192), Expect = 4.750e-13 Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 1
Query: 436 CGGGSPVPWGLR--WPLLLLWNIACIGSLVVTLVWFTEDYVR-QVQQGVKNFD---IQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAV-------VVPLAALVHFALYRLR 870
C + +PW L W +LWNI + ++VVT ++F Y + Q+++G D + H L F+ D ++ A +L H+V VYG++Y +FSIL++ + +Y+D+LDW+ AGF+ V ++PL +FALYRLR
Sbjct: 140 CFSKNRMPWYLNTSW---ILWNIVSVNAIVVTAIYFGALYNKLQIERGHPGIDYDNVNVHALNTVFVFADVVVCARPVRLLHVVYPIVYGLVYAIFSILFW--SVNHSNVIYKDVLDWNH--------AGFTTGVLAVVAFFIMPLLQCCYFALYRLR 284
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A2T7NUC3_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NUC3_POMCA) HSP 1 Score: 70.9 bits (172), Expect = 3.930e-10 Identity = 41/139 (29.50%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 466 LRWPLLLLW---NIACIGSLVVTLVWFTEDY-VRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLR 870
L W + L W NI + S++VT+++F+ + + V D+ H L FM++D ++ A ++ H++ +YGV YV+FS++++ PE + +Y+ +LDW + G ++ + +PL L+ FA Y+LR
Sbjct: 229 LPWYIQLYWLLGNIVQVFSVIVTVIYFSVLFPAKPDHSSVSLHDVNVHMLNTGFMVLDAMIGARPVRMLHVIYPLLYGVAYVIFSVIYWSRDPEHNV-VYKKVLDWSHPGLTVGVVCGLAV-IAIPLLQLLFFAAYQLR 365
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A8B8B014_CRAVI (protein rolling stone-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B014_CRAVI) HSP 1 Score: 66.2 bits (160), Expect = 1.170e-8 Identity = 38/140 (27.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 457 PWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQA--CIWAGFSLAVVVPLAALVHFALYRLR 870
PW L+ + +L+NIA +GS++VTL +F + + ++Q HG+ + ++ +L A +L H + + +YG+ Y++FS +++ + + +Y +LDW + + A C+ GF V +P + F +Y++R
Sbjct: 178 PWYLK-TVWILFNIASLGSVLVTLTFFIFLWPLFKTSSIGLINLQLHGINSVIIGIELMLTAVPCRLYHFIYALIYGIAYLIFSAIFYAVGNKIP--IYPGVLDWSKPGQTALICVLLGF---VFMPFLQFIFFIMYKVR 311
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI000B45E8A1 (protein rolling stone-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45E8A1) HSP 1 Score: 64.7 bits (156), Expect = 3.760e-8 Identity = 76/290 (26.21%), Postives = 130/290 (44.83%), Query Frame = 1
Query: 76 FVAYKFVLAAYFAFWAVYWPRVE--------GFREQAVHQLTFWTWDVCTGY---------FIISTVAALVCWRAMRRNSGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDY--VRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRK-QACIWAGFSLAVVVPLAALVHFALYRLREALHG 885
++ Y+ V+A Y FW +Y VE G V+ LT WT+ + Y F + T A++ WR + PV+ A E PS G + P P+ +G + +T + +P+ + +LL NI S++VTL++F + + Q + ++Q HG+ + ++ LL A L H V YG++Y+VF+ + FY A +D +Y ++LDW+ ++ Q I V++PL + F +YRL+ L+G
Sbjct: 64 YLLYRLVIAVYADFWLIY-TAVEYGSVAPGNGLYAWPVY-LTNWTYTMLCLYLTLHALTTLFFLCTSPAILWWRRL-----PVSQHC--ALFTELEVHPSLWGDDYE-------------PIPSHDNEDGELTYGETSTRSNLMPFYFKLVWVLL-NIMSSCSVMVTLIFFIFLWPQMNTDNQPIDLGNLQLHGINSVIVFLECLLTAAPVHLLHFVFPLTYGIVYLVFTAI-FYGAGNKDP-IYPEVLDWNSDKVGQTMIMVLVVGFVILPLLQVFFFIIYRLKLWLYG 328
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI001E1D5507 (protein rolling stone-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5507) HSP 1 Score: 60.8 bits (146), Expect = 6.210e-7 Identity = 69/287 (24.04%), Postives = 114/287 (39.72%), Query Frame = 1
Query: 85 YKFVLAAYFAFWAVYWPR---VEGFREQAVHQ---LTFWTWDVCTGYFIISTVAALV---------CWRAMRRNSGPVTAPPPPASPKEKNAQPS----REGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLW---NIACIGSLVVTLVWFTEDYVRQVQQGVK-NFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQ--NRKQACIWAGFSLAVVVPLAALVHFALYRLR 870
Y+F++AAY FW +Y R V + + LT WT+ V T Y ++ ++ L+ C R N + E QPS RE + P + + +T L W L+W NIA +++TL ++ Y G + +IQ HG+ ++++ + A +L H V + YG++Y +FS + Y A + LY +LDW + N + A F + +PL L F +Y+ R
Sbjct: 44 YRFIVAAYCIFWLIYTSRYGAVVVLNDTEIPMFAFLTTWTYFVLTVYLLLHFLSCLLYACRRGGAMCGRLSSENHRHIF--------HELQVQPSLWASREYDTIPGTDPDEV----------------FSDEMRTIK--------LSWLTKLIWILYNIASNACILITLAFWILLYPGMEMSGKELMINIQLHGITSVIIMIEICISAVPIRLLHFVYTLAYGLLYYLFSGI--YYAVDHKHVLYPHVLDWSEPGNTVIVMVLAAF---IALPLVQLFLFGIYKFR 293 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig73.14934.1 >prot_C-linearis_contig73.14934.1 ID=prot_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=303bp MGGTELRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQback to top mRNA from alignment at C-linearis_contig73:109506..112336+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig73.14934.1 ID=mRNA_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2831bp|location=Sequence derived from alignment at C-linearis_contig73:109506..112336+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig73:109506..112336+ >mRNA_C-linearis_contig73.14934.1 ID=mRNA_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at C-linearis_contig73:109506..112336+ (Chordaria linearis ClinC8C monoicous)back to top |