mRNA_C-linearis_contig73.14934.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14934.1
Unique NamemRNA_C-linearis_contig73.14934.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 9.120e-68
Identity = 100/160 (62.50%), Postives = 131/160 (81.88%), Query Frame = 1
Query:  451 PVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHGRFQHQRTAMLRRQAS 930
            PVP GLRW  L+LWNIACI SL+VT VW TEDYVRQV+QGVKNFD+QAHGL+ FFMLVDQLLIAD +KL HM+ +Q+YG++Y+ FS++WFY  PE++KYLY+D LDWD+NR QAC+  G ++ V+VP+A L+H  ++RLREAL+ R + +  A L+R+ S
Sbjct:   92 PVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHS 251          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 8.600e-67
Identity = 95/146 (65.07%), Postives = 122/146 (83.56%), Query Frame = 1
Query:  451 PVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHGR 888
            PVP GLRW  L+LWNIACI SL+VT VW +EDYVRQV+QG KNFD+QAHGL+ FFMLVDQLLIAD FKL HM+ +Q+YG++Y+ FS++WFY  PE++KYLY+D LDW +NR QAC+  G ++ V+VP+A L+H  ++RLREAL+GR
Sbjct:   10 PVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGR 155          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 9.210e-53
Identity = 118/313 (37.70%), Postives = 162/313 (51.76%), Query Frame = 1
Query:    1 TRYG-TIIMGGTELRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQLTFWTWDVCTGYFIISTVAALVCWRAMRRN--SGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREAL-HGRFQHQRTAMLRRQA 927
            TR+G T+ +     R GTSRFL QG FV YK  LA YF +WA++W  V+ +       LT WTW   T YF++S ++A +CWRA+     SGPV                 R+G      P    PS  T                   G   PVP  LR   L LW+ ACI SL+V  +++   Y       +   D QAH  +   ML+DQ L+ADEFKL++++  Q +GVIY+ F++ W+YLAP++D+ +Y  ILDW+ N   ACI+A  ++ V  PL  LVHF ++RLRE + H R      A    QA
Sbjct:    3 TRHGGTVPLDDETPRIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRF--LTHWTWYATTTYFVVSALSAFLCWRAIAVTVASGPV-----------------RDGDPAFDAPTSSRPSDRT-------------------GSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDK---LTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQA 273          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.450e-28
Identity = 86/283 (30.39%), Postives = 142/283 (50.18%), Query Frame = 1
Query:   37 LRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQLTFWTWDVCTGYFIISTVAALVCWRAMRRNSGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHG 885
            LRA TSRFL  G FVA+K +  AYF  W   WP    +    +   T+W W   T YF +S   A   +R   R S    A     +P   +A     G G D   P  +  +  + TP   T               P+   +    L  WN+AC+GSL V +++++  Y       + + D+ AH LI F M+ DQ+L+A  F+++ M  ++V+ + Y+V+S+LW++L  E    L   ILDWD++  +A  ++   + V++P  +++H+ ++RLRE+++ 
Sbjct:   13 LRAATSRFLKPGPFVAFKGLFVAYFLIWCFLWPL--DYTSMYLFA-TYWVWYTGTAYFALSFATACAHFR---RWSAATQA----RAPDNGSA-----GGGSDRPGPSWSNLTGDVSTPALRTRI------------HPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTP---ITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFLEQE----LIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIFRLRESIYA 261          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.690e-25
Identity = 59/148 (39.86%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  439 GGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALH 882
            G   PVP  LR   L+LW+ ACIGSL+V  +++                          +L+DQ L+ADEFKL++++  Q +GVIY+ F++ W+YLAP++D+ +Y  ILDW+ N   ACI+A  ++ V  PL  LVH  L+RLRE+++
Sbjct:   10 GSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGA------------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI001B88D388 (uncharacterized protein LOC121369499 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D388)

HSP 1 Score: 78.6 bits (192), Expect = 4.750e-13
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  436 CGGGSPVPWGLR--WPLLLLWNIACIGSLVVTLVWFTEDYVR-QVQQGVKNFD---IQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAV-------VVPLAALVHFALYRLR 870
            C   + +PW L   W   +LWNI  + ++VVT ++F   Y + Q+++G    D   +  H L   F+  D ++ A   +L H+V   VYG++Y +FSIL++  +      +Y+D+LDW+         AGF+  V       ++PL    +FALYRLR
Sbjct:  140 CFSKNRMPWYLNTSW---ILWNIVSVNAIVVTAIYFGALYNKLQIERGHPGIDYDNVNVHALNTVFVFADVVVCARPVRLLHVVYPIVYGLVYAIFSILFW--SVNHSNVIYKDVLDWNH--------AGFTTGVLAVVAFFIMPLLQCCYFALYRLR 284          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A2T7NUC3_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NUC3_POMCA)

HSP 1 Score: 70.9 bits (172), Expect = 3.930e-10
Identity = 41/139 (29.50%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  466 LRWPLLLLW---NIACIGSLVVTLVWFTEDY-VRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQACIWAGFSLAVVVPLAALVHFALYRLR 870
            L W + L W   NI  + S++VT+++F+  +  +     V   D+  H L   FM++D ++ A   ++ H++   +YGV YV+FS++++   PE +  +Y+ +LDW        +  G ++ + +PL  L+ FA Y+LR
Sbjct:  229 LPWYIQLYWLLGNIVQVFSVIVTVIYFSVLFPAKPDHSSVSLHDVNVHMLNTGFMVLDAMIGARPVRMLHVIYPLLYGVAYVIFSVIYWSRDPEHNV-VYKKVLDWSHPGLTVGVVCGLAV-IAIPLLQLLFFAAYQLR 365          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: A0A8B8B014_CRAVI (protein rolling stone-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B014_CRAVI)

HSP 1 Score: 66.2 bits (160), Expect = 1.170e-8
Identity = 38/140 (27.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  457 PWGLRWPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRKQA--CIWAGFSLAVVVPLAALVHFALYRLR 870
            PW L+  + +L+NIA +GS++VTL +F   +       +   ++Q HG+    + ++ +L A   +L H + + +YG+ Y++FS +++ +  +    +Y  +LDW +  + A  C+  GF   V +P    + F +Y++R
Sbjct:  178 PWYLK-TVWILFNIASLGSVLVTLTFFIFLWPLFKTSSIGLINLQLHGINSVIIGIELMLTAVPCRLYHFIYALIYGIAYLIFSAIFYAVGNKIP--IYPGVLDWSKPGQTALICVLLGF---VFMPFLQFIFFIMYKVR 311          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI000B45E8A1 (protein rolling stone-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45E8A1)

HSP 1 Score: 64.7 bits (156), Expect = 3.760e-8
Identity = 76/290 (26.21%), Postives = 130/290 (44.83%), Query Frame = 1
Query:   76 FVAYKFVLAAYFAFWAVYWPRVE--------GFREQAVHQLTFWTWDVCTGY---------FIISTVAALVCWRAMRRNSGPVTAPPPPASPKEKNAQPSREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLWNIACIGSLVVTLVWFTEDY--VRQVQQGVKNFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQNRK-QACIWAGFSLAVVVPLAALVHFALYRLREALHG 885
            ++ Y+ V+A Y  FW +Y   VE        G     V+ LT WT+ +   Y         F + T  A++ WR +     PV+     A   E    PS  G   +             P P+    +G  +  +T    + +P+  +   +LL NI    S++VTL++F   +  +    Q +   ++Q HG+    + ++ LL A    L H V    YG++Y+VF+ + FY A  +D  +Y ++LDW+ ++  Q  I       V++PL  +  F +YRL+  L+G
Sbjct:   64 YLLYRLVIAVYADFWLIY-TAVEYGSVAPGNGLYAWPVY-LTNWTYTMLCLYLTLHALTTLFFLCTSPAILWWRRL-----PVSQHC--ALFTELEVHPSLWGDDYE-------------PIPSHDNEDGELTYGETSTRSNLMPFYFKLVWVLL-NIMSSCSVMVTLIFFIFLWPQMNTDNQPIDLGNLQLHGINSVIVFLECLLTAAPVHLLHFVFPLTYGIVYLVFTAI-FYGAGNKDP-IYPEVLDWNSDKVGQTMIMVLVVGFVILPLLQVFFFIIYRLKLWLYG 328          
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Match: UPI001E1D5507 (protein rolling stone-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5507)

HSP 1 Score: 60.8 bits (146), Expect = 6.210e-7
Identity = 69/287 (24.04%), Postives = 114/287 (39.72%), Query Frame = 1
Query:   85 YKFVLAAYFAFWAVYWPR---VEGFREQAVHQ---LTFWTWDVCTGYFIISTVAALV---------CWRAMRRNSGPVTAPPPPASPKEKNAQPS----REGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLRWPLLLLW---NIACIGSLVVTLVWFTEDYVRQVQQGVK-NFDIQAHGLIDFFMLVDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDWDQ--NRKQACIWAGFSLAVVVPLAALVHFALYRLR 870
            Y+F++AAY  FW +Y  R   V    +  +     LT WT+ V T Y ++  ++ L+         C R    N   +          E   QPS    RE   +    P +                    + +T          L W   L+W   NIA    +++TL ++   Y      G +   +IQ HG+    ++++  + A   +L H V +  YG++Y +FS +  Y A +    LY  +LDW +  N     + A F   + +PL  L  F +Y+ R
Sbjct:   44 YRFIVAAYCIFWLIYTSRYGAVVVLNDTEIPMFAFLTTWTYFVLTVYLLLHFLSCLLYACRRGGAMCGRLSSENHRHIF--------HELQVQPSLWASREYDTIPGTDPDEV----------------FSDEMRTIK--------LSWLTKLIWILYNIASNACILITLAFWILLYPGMEMSGKELMINIQLHGITSVIIMIEICISAVPIRLLHFVYTLAYGLLYYLFSGI--YYAVDHKHVLYPHVLDWSEPGNTVIVMVLAAF---IALPLVQLFLFGIYKFR 293          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JVA0_9PHAE9.120e-6862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX10_ECTSI8.600e-6765.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSI9_9PHAE9.210e-5337.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G736_ECTSI1.450e-2830.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G734_ECTSI1.690e-2539.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001B88D3884.750e-1332.28uncharacterized protein LOC121369499 n=1 Tax=Gigan... [more]
A0A2T7NUC3_POMCA3.930e-1029.50Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
A0A8B8B014_CRAVI1.170e-827.14protein rolling stone-like n=1 Tax=Crassostrea vir... [more]
UPI000B45E8A13.760e-826.21protein rolling stone-like n=1 Tax=Mizuhopecten ye... [more]
UPI001E1D55076.210e-724.04protein rolling stone-like n=1 Tax=Mercenaria merc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:109506..112336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.4
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog6500.XP_005110223.1
Hectar predicted targeting categorysignal peptide
GOsGO:0000768,GO:0005575,GO:0006949,GO:0007520,GO:0008150,GO:0009653,GO:0009987,GO:0014902,GO:0016020,GO:0030154,GO:0032502,GO:0042692,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0061061
EggNOG free text desc.Protein rolling stone-like
EggNOG OGs2BZ8C@1,2S8CX@2759,3A92Y@33154,3BTZA@33208,3DATV@33213
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003880.1
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons6
Model size930
Cds size909
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.390157-UTR-C-linearis_contig73:109505..1095261622930398.390157-UTR-C-linearis_contig73:109505..109526Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 109506..109526 +
1690881049.3514953-UTR-C-linearis_contig73:109505..1095261690881049.3514953-UTR-C-linearis_contig73:109505..109526Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 109506..109526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930398.4045563-CDS-C-linearis_contig73:109526..1097101622930398.4045563-CDS-C-linearis_contig73:109526..109710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 109527..109710 +
1690881049.3662603-CDS-C-linearis_contig73:109526..1097101690881049.3662603-CDS-C-linearis_contig73:109526..109710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 109527..109710 +
1622930398.421596-CDS-C-linearis_contig73:110546..1108871622930398.421596-CDS-C-linearis_contig73:110546..110887Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 110547..110887 +
1690881049.3765259-CDS-C-linearis_contig73:110546..1108871690881049.3765259-CDS-C-linearis_contig73:110546..110887Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 110547..110887 +
1622930398.4380074-CDS-C-linearis_contig73:111102..1111741622930398.4380074-CDS-C-linearis_contig73:111102..111174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111103..111174 +
1690881049.390879-CDS-C-linearis_contig73:111102..1111741690881049.390879-CDS-C-linearis_contig73:111102..111174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111103..111174 +
1622930398.4583786-CDS-C-linearis_contig73:111439..1114991622930398.4583786-CDS-C-linearis_contig73:111439..111499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111440..111499 +
1690881049.4013052-CDS-C-linearis_contig73:111439..1114991690881049.4013052-CDS-C-linearis_contig73:111439..111499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111440..111499 +
1622930398.475283-CDS-C-linearis_contig73:111906..1120911622930398.475283-CDS-C-linearis_contig73:111906..112091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111907..112091 +
1690881049.4112566-CDS-C-linearis_contig73:111906..1120911690881049.4112566-CDS-C-linearis_contig73:111906..112091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 111907..112091 +
1622930398.4880786-CDS-C-linearis_contig73:112269..1123361622930398.4880786-CDS-C-linearis_contig73:112269..112336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 112270..112336 +
1690881049.4224348-CDS-C-linearis_contig73:112269..1123361690881049.4224348-CDS-C-linearis_contig73:112269..112336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 112270..112336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14934.1prot_C-linearis_contig73.14934.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 109527..112336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14934.1

>prot_C-linearis_contig73.14934.1 ID=prot_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=303bp
MGGTELRAGTSRFLVQGAFVAYKFVLAAYFAFWAVYWPRVEGFREQAVHQ
LTFWTWDVCTGYFIISTVAALVCWRAMRRNSGPVTAPPPPASPKEKNAQP
SREGQGVDSNPPVQAPSSTTLPTPTATTSEGIGSQAQTCGGGSPVPWGLR
WPLLLLWNIACIGSLVVTLVWFTEDYVRQVQQGVKNFDIQAHGLIDFFML
VDQLLIADEFKLKHMVISQVYGVIYVVFSILWFYLAPEEDKYLYQDILDW
DQNRKQACIWAGFSLAVVVPLAALVHFALYRLREALHGRFQHQRTAMLRR
QAS
back to top

mRNA from alignment at C-linearis_contig73:109506..112336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14934.1 ID=mRNA_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2831bp|location=Sequence derived from alignment at C-linearis_contig73:109506..112336+ (Chordaria linearis ClinC8C monoicous)
ACGAGGTACGGCACCATCATTATGGGAGGAACCGAGCTTCGTGCCGGCAC GTCGAGGTTTCTAGTGCAAGGAGCTTTTGTTGCCTACAAGTTTGTGCTGG CTGCATACTTCGCGTTCTGGGCGGTTTACTGGCCTAGGGTCGAGGGCTTC CGGGAGCAGGCGGTACACCAACTGACGTTCTGGACCTGGGATGTTTGCAC AGGATGTGAGTGACGAATAAGTGCATTTATTTGCTTTGTGGGTGGAGACG TGCAGGATAAGACTTTGGATTTTAATATGTAAACTACTACCGGTAAAAAA AGTTGTCAAGCTGCTTGAGTCGGCTTTCAACGCCATCCGAGGGGTTTCCA ACCTTATCCGTAGCTTTTTTCTTTGGCGGAGTGCTGTTGTACACCCACGT TCTAGGCCGGTGGTCGTGCTTTTGTAGACCAACTGGCCTCCGCCTTTATT TGCTGTCGACGGAGGTCGGCGGATGCCCACAGCTTTGTATAGATCGACTA CCTTAACGCTTAAAGGTGCGAGAGTATTGCTCGTGGACCGGGAACAACTT GACCGCGCTGCCCAGCATCACCCACGTATCCGTGAAGAAGAATTTACTGT TCCCGTGAGAACACGTATCAATTTTCACGAAAGGGGTCGGCCCCGGTTGA CGCACTGAGTGAGCACAGCACCCAGCTTGTACTCATGAATGCCTTTTTCC GGGTATGGTGTGCTTTGTCCGGGTATGGTTGTCGGTTTGGGCCGCATTGT TCCGCGCGGACACCATAGTTTGTGCTATCAGAAACGTACAGGGCAACACG CGCAGGAAGCAGAAACGCCAGAAAATATATTAAAACTCACCCGCACATGC ATTACAAACGCGAGGGAGCACGCAGCCGATGTCTCACACCCATACATGTT ACTCGCCGGACTTTGTCCCCGGTGCTTTCTGAGCCTGGCCCGGCGAAACC CGATGTGCTCCGTCCTGGCTGTGTTTCAATGTGAGGAACATGGTCTCTCA CGACGGCAACATGCAAAATCAACGCCCCCCCCCCTCCCCAGATTTCATCA TCTCCACGGTCGCGGCGCTCGTCTGCTGGAGGGCGATGAGAAGGAACAGC GGACCTGTAACAGCACCACCGCCACCGGCATCACCGAAAGAGAAGAACGC CCAACCCAGTCGTGAAGGTCAAGGTGTCGACAGCAATCCTCCAGTACAAG CACCATCCTCCACGACGCTGCCCACACCAACAGCAACGACATCTGAAGGA ATTGGTTCTCAGGCGCAAACGTGTGGCGGGGGGTCGCCTGTGCCGTGGGG GTTGCGGTGGCCGCTGCTCCTTCTGTGGAACATAGCGTGCATCGGGTCTT TGGTCGTCACCTTGGTTTGGTTTACGGAAGACGTGAGTGAGCGCGAAGAC GTTTTTGCGATATTGTAGAACAGGGTATTGCTGTTCGAAAAGCGCTAAAA CACGCAAAACGAGAATAGCGGGGTAGAGTCTCCGTATATCTCCGATGACA AACACCCCTAACAGGCTGGTTATTGCGGGTCGTGCTGGTATAGGGCTTAG CTGCTAAACCATCCCCCACAACGTCGCGCATCGCTTGTTCTCGACAGTAT GTGCGACAGGTTCAACAAGGCGTGAAGAACTTCGACATCCAGGCCCACGG TCTCATTGACTTCTTTATGGTAAGTTACATGCTGGAACGAATAGCATGCA CTTGCTCTGAACCTAAAAAAAACACCCTCTGAAGCGTTGGCGACACGCGA AACACACTTCTGGCCGTGGCATGCGTTCTCGTTAGTACGGATTTTGTCGC GTGGTGTGAATGCTAATGCTTCTCTACTTGCTCCTGCACCCGAACGACAA CAAATTGAATCCCTCCTCCAATACGTGTGGTTGTATGTCGATGCCTCCGT CCTGCGCCGGTAACGTCTACCTATCTATGTCCAGCTGGTGGACCAGCTGC TCATAGCGGACGAGTTCAAGCTGAAGCACATGGTAATTTCCCAGGTGAGA ACTCGACGGATTATCTGCACATCAAATTCCCCACCAGACTATAAGCTGAC ATGCGAAATACTTGCTCTTGTGCGGAGGAAAGCACGCAATACTGGTAGCC CCTGATCCATGGGAGCTTGTTGCAATGCTGAAAAATCTCCAGCCCCGGTG TGCCAACAACGCCGAACCCGCCGAGTTTACGACGTTAATTACCGTTAGGT TGTCGTTGCCGTTTTGGTTTACAGTAGTTCGTGTTCCGAGAGGCTCTGCG CGTAGGCAGAATAACGCAAGCATTTTCCGTGGCTTGGGATATCGTACTTG TCCTTCCTCCCTGCGGTCGCGAGAGACAACGGGTTTCCTGACATCAACAA TGTCTCAACAAATATGTCGAATCTCGTCAATGCCGCCGCTTCCTTCGTCA GGTCTACGGGGTAATCTACGTGGTGTTTTCCATCCTCTGGTTCTATCTGG CACCGGAAGAAGACAAGTACCTGTACCAGGACATTCTTGACTGGGACCAG AACAGGAAGCAGGCATGCATCTGGGCCGGGTTTTCCCTCGCAGTGGTGGT GCCACTGGCTGCATTAGTTCACTTCGCGCTTTACAGGTACTTTTTGTGCA GAGTAGACTCTCGTGAAATTCCTTCAATTTTGGCCACAACGCATTCGGTG GCGATATGGCACAATACTTCAGTCCTGAACTGTGCTGCGTAGGCGATTAC ATTTCGAAGTGCTCCCGCCGGTATTGCCATCACGCGCACCGATCCGCACT GTTTGCCATCACAGGTTAAGAGAGGCGCTCCACGGTCGGTTTCAACACCA AAGAACAGCAATGCTCAGGAGACAGGCTTCA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig73:109506..112336+

>mRNA_C-linearis_contig73.14934.1 ID=mRNA_C-linearis_contig73.14934.1|Name=mRNA_C-linearis_contig73.14934.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at C-linearis_contig73:109506..112336+ (Chordaria linearis ClinC8C monoicous)
ATGGGAGGAACCGAGCTTCGTGCCGGCACGTCGAGGTTTCTAGTGCAAGG
AGCTTTTGTTGCCTACAAGTTTGTGCTGGCTGCATACTTCGCGTTCTGGG
CGGTTTACTGGCCTAGGGTCGAGGGCTTCCGGGAGCAGGCGGTACACCAA
CTGACGTTCTGGACCTGGGATGTTTGCACAGGATATGGGAGGAACCGAGC
TTCGTGCCGGCACGTCGAGGTTTCTAGTGCAAGGAGCTTTTGTTGCCTAC
AAGTTTGTGCTGGCTGCATACTTCGCGTTCTGGGCGGTTTACTGGCCTAG
GGTCGAGGGCTTCCGGGAGCAGGCGGTACACCAACTGACGTTCTGGACCT
GGGATGTTTGCACAGGATATTTCATCATCTCCACGGTCGCGGCGCTCGTC
TGCTGGAGGGCGATGAGAAGGAACAGCGGACCTGTAACAGCACCACCGCC
ACCGGCATCACCGAAAGAGAAGAACGCCCAACCCAGTCGTGAAGGTCAAG
GTGTCGACAGCAATCCTCCAGTACAAGCACCATCCTCCACGACGCTGCCC
ACACCAACAGCAACGACATCTGAAGGAATTGGTTCTCAGGCGCAAACGTG
TGGCGGGGGGTCGCCTGTGCCGTGGGGGTTGCGGTGGCCGCTGCTCCTTC
TGTGGAACATAGCGTGCATCGGGTCTTTGGTCGTCACCTTGGTTTGGTTT
ACGGAAGACATTTCATCATCTCCACGGTCGCGGCGCTCGTCTGCTGGAGG
GCGATGAGAAGGAACAGCGGACCTGTAACAGCACCACCGCCACCGGCATC
ACCGAAAGAGAAGAACGCCCAACCCAGTCGTGAAGGTCAAGGTGTCGACA
GCAATCCTCCAGTACAAGCACCATCCTCCACGACGCTGCCCACACCAACA
GCAACGACATCTGAAGGAATTGGTTCTCAGGCGCAAACGTGTGGCGGGGG
GTCGCCTGTGCCGTGGGGGTTGCGGTGGCCGCTGCTCCTTCTGTGGAACA
TAGCGTGCATCGGGTCTTTGGTCGTCACCTTGGTTTGGTTTACGGAAGAC
TATGTGCGACAGGTTCAACAAGGCGTGAAGAACTTCGACATCCAGGCCCA
CGGTCTCATTGACTTCTTTATGTATGTGCGACAGGTTCAACAAGGCGTGA
AGAACTTCGACATCCAGGCCCACGGTCTCATTGACTTCTTTATGCTGGTG
GACCAGCTGCTCATAGCGGACGAGTTCAAGCTGAAGCACATGGTAATTTC
CCAGCTGGTGGACCAGCTGCTCATAGCGGACGAGTTCAAGCTGAAGCACA
TGGTAATTTCCCAGGTCTACGGGGTAATCTACGTGGTGTTTTCCATCCTC
TGGTTCTATCTGGCACCGGAAGAAGACAAGTACCTGTACCAGGACATTCT
TGACTGGGACCAGAACAGGAAGCAGGCATGCATCTGGGCCGGGTTTTCCC
TCGCAGTGGTGGTGCCACTGGCTGCATTAGTTCACTTCGCGCTTTACAGG
TCTACGGGGTAATCTACGTGGTGTTTTCCATCCTCTGGTTCTATCTGGCA
CCGGAAGAAGACAAGTACCTGTACCAGGACATTCTTGACTGGGACCAGAA
CAGGAAGCAGGCATGCATCTGGGCCGGGTTTTCCCTCGCAGTGGTGGTGC
CACTGGCTGCATTAGTTCACTTCGCGCTTTACAGGTTAAGAGAGGCGCTC
CACGGTCGGTTTCAACACCAAAGAACAGCAATGCTCAGGAGACAGGCTTC
AGTTAAGAGAGGCGCTCCACGGTCGGTTTCAACACCAAAGAACAGCAATG
CTCAGGAGACAGGCTTCA
back to top