mRNA_C-linearis_contig7.14610.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14610.1
Unique NamemRNA_C-linearis_contig7.14610.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A7S1G652_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G652_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.480e-30
Identity = 86/301 (28.57%), Postives = 133/301 (44.19%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGK---GGKTKLVFPAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAAGHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETGSGVRDMAWLP 1026
            MKQ KL PSGCQ W +  + AGG   AY STL  YVYD   F+L  +L G+D  +  L W+P+        S + +   W+  + +RV    +   P    W+P     +A         HL   +D+         T +++ +  +    +W+    G +  G  DG +S  +  A S +   +   GGK   V        VVDL                      WD      I  FDR   GL  I W+ WAPGNF  +++++GV +++N+SQ+HP+  V+     SG + + ++P
Sbjct:    1 MKQFKLVPSGCQGWHAGVLGAGGGRYAYCSTLAIYVYDCATFTLQKLLTGHDRTITGLSWNPSEPLLFATCSLDAKAIVWNASTGERVKTRALEVLPHGLDWNPHLATEIAWYDESGG-VHLWHVDDN----KTVRVTEKAAREGHKIKVMRWNVRRPGVIACGHADGSLSLVQPEARSSSDRLQRVPGGKEHTV-------PVVDLXXXXXXXXXXXXX-XXXXXXXXWDMESQVEINVFDRQGAGLRSIGWLEWAPGNFATVNNRTGVIRVWNVSQRHPLELVRAAR--SGFQSVTFMP 286          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A7S1G4J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4J0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.140e-28
Identity = 86/301 (28.57%), Postives = 133/301 (44.19%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGK---GGKTKLVFPAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAAGHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETGSGVRDMAWLP 1026
            MKQ KL PSGCQ W +  + AGG   AY STL  YVYD   F+L  +L G+D  +  L W+P+        S + +   W+  + +RV    +   P    W+P     +A         HL   +D+         T +++ +  +    +W+    G +  G  DG +S  +  A S +   +   GGK   V        VVDL                      WD      I  FDR   GL  I W+ WAPGNF  +++++GV +++N+SQ+HP+  V+     SG + + ++P
Sbjct:    1 MKQFKLVPSGCQGWHAGVLGAGGGRYAYCSTLAIYVYDCATFTLQKLLTGHDRTITGLSWNPSEPLLFATCSLDAKAIVWNASTGERVKTRALEVLPHGLDWNPHLATEIAWYDESGG-VHLWHVDDN----KTVRVTEKAAREGHKIKVMRWNVRRPGVIACGHADGSLSLVQPEARSSSDRLQRVPGGKEHTV-------PVVDLXXXXXXXXXXXXX-XXXXXXXXWDMESQVEINVFDRQGAGLRSIGWLEWAPGNFATVNNRTGVIRVWNVSQRHPLELVRAAR--SGFQSVTFMP 286          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A1R2BH98_9CILI (ANAPC4_WD40 domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BH98_9CILI)

HSP 1 Score: 110 bits (275), Expect = 7.600e-23
Identity = 69/288 (23.96%), Postives = 126/288 (43.75%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVFPAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAAGHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETG 996
            +KQ+KL PSGCQ W+   +A  G  +AY STL  Y  D   F++  I+  +D  +  + W+  N  ++   S +     W++ ++      ++ +P     ++P     L  +    +   L            +  T++++   +R    K+     G    G  +G       +  +          KL  P +   S  D+ + DP    Y+LV +  G++ L+D      +  FD+   G+  + W   +PG F  ++ K    KM+N+S+K+P+ TVKLG +G
Sbjct:    2 LKQIKLCPSGCQYWNKSVIARSGKLLAYCSTLAIYFLDLDTFTIAKIIAAHDQTITCITWNQLNPAQLASVSMDNMFYVWNLATDIPDVHLNIASPVLMMEFNPSKADELLFLHENGDIKILNT--------VTKAITKKANYAGIRPKTLKFHPSFTGRFALGCNEGGALVCAMAHDN--------VKKLDLPKQNTSSE-DI-QWDPLSDKYLLVAFKDGSLALFDVETKEILMAFDKISTGIKSMAWNKSSPGEFFTVTDKIAALKMWNVSKKNPVDTVKLGNSG 271          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A1R2CK69_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CK69_9CILI)

HSP 1 Score: 110 bits (274), Expect = 1.030e-22
Identity = 70/288 (24.31%), Postives = 128/288 (44.44%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVFPAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAAGHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETG 996
            +KQ+KL PSGCQ W+   VA  G  +AY STL  Y  D   F++  I+  +D  +  + W+  N  ++   S +     W++ ++      ++ +P     ++P     L  +    +   L     +         T++++   +R    K+     G    G  +G     + S ++          K +  A++     D+ + DP    Y+LV +  G +VL+D      +  FD+   G+  I W   +PG F  ++ K    K++N+S+K+P+ TVKLG +G
Sbjct:    2 LKQIKLCPSGCQYWNKSVVARNGKLLAYCSTLAIYFLDLDTFTISKIIAAHDQTITCITWNQQNPSQLASVSMDNILYVWNLTTDTPDVHLNITSPVLMMEFNPSKIDELLFLHENGDIKTLNTQTKA--------ITKKANYAGVRPKILKFHPSINGRFALGCNEGGALVCDMSHNN---------VKKLDLAKQNTPSEDI-QWDPLSDKYLLVAFKDGNLVLFDVESTQVLMAFDQISTGIKSIAWNKSSPGEFFTVTDKIAALKVWNVSKKNPVDTVKLGNSG 271          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A1V9YNQ2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNQ2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.720e-21
Identity = 84/315 (26.67%), Postives = 138/315 (43.81%), Query Frame = 1
Query:  109 ATPLPKPYMKQVKLHPSGCQQW---SSQTVAAG---GTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHR--VLVFSNNGRGSEWDVRSEKRVADFDVGAP--PACSAWDPVN-PANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVFPAEE------CGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDA--AGHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETG 996
            A P  +  ++Q+++ PSGC Q     +  +  G   G Y A+ STL  YVYDA DF L  +L   D N+  + W P   H   +   + +GR   WDV +E+   +  + +P  P    W+P+  PA    V+   ++ HL   +             + +D  +  T  +W+    G L  G   G +     +           K  L+   E+         + D+ + D     Y+LV Y  G   LW+   A    + TFD+   G   I W+ WAPG F+  +++SG+ K++N+SQ  PI  +++   G
Sbjct:    4 ADPRAQVALQQLRVVPSGCMQRRGAGNLHIVGGDATGAYFAFCSTLAVYVYDASDFRLYRLLSTKD-NLLGMAWFPQPRHAKYLAAVALDGRLVLWDVGTEEIAFEARLPSPSAPVAFQWNPLETPAIQLAVACTDHQVHLWTIDLETSAQSISKLLSKPTDSPM--TVLRWNPQLRGMLAIGCESGAIGLHVLNR----------KALLLITREKKAGPKKAQGITDM-QWDSLSNLYLLVAYRDGHSALWEVTEASGAQLHTFDKQGAGTNAIAWLPWAPGQFVTTNARSGILKVWNVSQPTPIEHLRVRSAG 304          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A0G4FH37_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH37_VITBC)

HSP 1 Score: 97.4 bits (241), Expect = 1.990e-18
Identity = 83/318 (26.10%), Postives = 139/318 (43.71%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAG--GTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEK-RVA-DFDVGAPPACSA----------------------WDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVF--PAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAAGHCSIAT--FDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETG 996
            M+Q++L PSG Q W+   +A    G + AYASTL  ++Y   DF L  ++ G++  + +L W P +S  +     +GR + W + SEK RV+     G+PP                          +    P+     S G+ ++  + +  +    F + Y   ++  SLR    +W       L+ G+TDG V     S          G+       P       V+  + DP    Y LV Y  G + L D      +++  FDR  VG+  I W+   PGNFL ++ K+G+ +++N SQ+ P+  +++   G
Sbjct:    1 MRQIRLVPSGIQLWNPAVLAVSPDGAHFAYASTLALFIYRRADFCLHKMIAGHEKTITALSWCPQDSDFIASCFTDGRIAVWHLPSEKLRVSRSAPSGSPPLLLEXXXXXXXXXXXXXXXXXXXXXDFSLTTPSGSFDASSGSAQS--LGSPTAKEATFSKLYA--AAGGSLRVM--RWHPTTPERLLLGFTDGSVVCLHPSTGRRMSIPYKGRNSPAVGKPVASDAHSVEEIQWDPLSADYFLVSYRDGHLSLMDLESQTEVSSVPFDRQPVGVHSIAWVKGQPGNFLTVTEKTGLIRLWNASQRAPLEQLRVAPAG 312          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A1V9Y771_9STRA (WD repeat-containing protein 17 isoform X3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y771_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.140e-17
Identity = 78/315 (24.76%), Postives = 134/315 (42.54%), Query Frame = 1
Query:  136 KQVKLHPSGCQQ----WSSQTVAAGG--TYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPT--NSHRVLVFSNNGRGSEWDVRSEKRVAD--FDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVFPAEECGSVVDLS----RHDPNGGPYVLVGYSSGTVVLWDAAGHCS--IATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETGSGVRDMAWLPSQ 1032
            +Q ++ PSGC       +   V A    T  ++ STL  Y+Y A    L  +L   D N+  + W P   +SH +   S  GR + W V +E+ V +       PP    W P   + L +    A++   + + D   G     +    S ++   T  +W+  + G L  G+ +G +    A            K   +   ++    +DL+    + D     Y+LV Y  G   LW+        + TFD+   G   I W+  APG F+  +++SG+ K++N+SQ  P+  +++    SG+  +A L  Q
Sbjct:    7 QQYRIVPSGCMHRRGFGNLHIVGANAKNTLFSFCSTLAVYIYQADTIRLYRLLSTKD-NLMGMAWFPLVCHSHYLAAVSMEGRLTLWHVDNEEIVFEAWLPTKKPPTSLEWSPHETSILKLAIACADKNIYVWSIDLESGSQDVKFLLNKSTEAA-ITVIRWNAQQKGMLAMGFENGSIGIHTAKE----------KNPFIITRDKKSKKMDLAITDMQWDTLSNIYLLVAYKDGHCALWEVTETSGNQLHTFDKQGSGTNAISWLPSAPGQFVTANARSGILKVWNVSQPQPLQHIRV--RSSGIHSIALLNGQ 307          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A5J4VWN5_9EUKA (Putative Vegetative incompatibility protein HET-E-1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VWN5_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 3.150e-16
Identity = 74/292 (25.34%), Postives = 125/292 (42.81%), Query Frame = 1
Query:  133 MKQVKLHPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVHSLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVNPANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQYEYGTLVTGWTDGRV--SFSEASASSGNGGGKGGKTKLVFPAEECGSVVDLSRHDPNGGPYVLVGYSSGTVVLWDAA--GHCSIATFDRCIVGLAGIRWMAWAPGNFLALSSKSGVAKMFNISQKHPIGTVKLGETG 996
            +KQV L PSG Q W+   V       AY S+L+ YVY +  + L  IL G D  + S+ W P + + + V   +     WD+  ++  +   +        W   N AN+    +      ++ N+       C  +               W+  +   L     + R+   F E + +S      G   + V+       + D+ + DP    +++V  ++G + L+D A  G   +  FDR   G+A + W+ W PG F   S KSGV K++N+SQK P  ++ +  TG
Sbjct:    2 IKQVALIPSGTQPWARYVVGNCHNNFAYCSSLSVYVYSSASYELRKILNGPDSYIMSMCWSPFSQNALAVSYKDKSFHLWDLHRQRPYSKISLDRFFVQMEW---NQANVKSQFK-----PIITNQ------LCYFFA--------------WNPAQSFCLACAGQERRIIIRFDETNTNSKLFNFSGILDERVY-------IKDM-KWDPLSSNFLIVVLNNGEMGLFDTAQEGGEEMMRFDRENTGIAAVAWIPWEPGGFATASEKSGVVKLWNVSQKQPTTSIHIHATG 257          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: D7G1Z0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.320e-16
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  883 MAWAPGNFLALSSKSGVAKMFNISQKH-PIGTVKLGETGSGVRDMAWLPSQ 1032
            MAWAPGNFL LSSK+ V K++NISQ H PIGTVKLGETGSGVRDMAWLP+Q
Sbjct:    1 MAWAPGNFLVLSSKTAVGKVYNISQSHTPIGTVKLGETGSGVRDMAWLPAQ 51          
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Match: A0A6H5L4N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.860e-15
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  883 MAWAPGNFLALSSKSGVAKMFNISQKH-PIGTVKLGETGSGVRDMAWLPSQ 1032
            MAWAPGNFL LSSK+ V K++NISQ H PIG+VKLGETGSGVRDMAWLP+Q
Sbjct:    1 MAWAPGNFLVLSSKTAVGKVYNISQSHTPIGSVKLGETGSGVRDMAWLPAQ 51          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S1G652_9STRA5.480e-3028.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1G4J0_9STRA2.140e-2828.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1R2BH98_9CILI7.600e-2323.96ANAPC4_WD40 domain-containing protein n=2 Tax=Sten... [more]
A0A1R2CK69_9CILI1.030e-2224.31Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1V9YNQ2_9STRA3.720e-2126.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0G4FH37_VITBC1.990e-1826.10Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A1V9Y771_9STRA1.140e-1724.76WD repeat-containing protein 17 isoform X3 n=1 Tax... [more]
A0A5J4VWN5_9EUKA3.150e-1625.34Putative Vegetative incompatibility protein HET-E-... [more]
D7G1Z0_ECTSI5.320e-1682.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4N2_9PHAE1.860e-1580.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:3734879..3737959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score94.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog8469.XP_007067131.1
Preferred nameWDR17
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.WD repeat domain 17
EggNOG OGs39SW7@33154,3BF1F@33208,3CR5E@33213,481TX@7711,491MT@7742,4CGUE@8459,COG2319@1,KOG0273@2759
COG Functional cat.B
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Exons6
Model size1041
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14610.1prot_C-linearis_contig7.14610.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 3734879..3737959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.012848-CDS-C-linearis_contig7:3734878..37350021622930331.012848-CDS-C-linearis_contig7:3734878..3735002Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3734879..3735002 -
1690881016.0300174-CDS-C-linearis_contig7:3734878..37350021690881016.0300174-CDS-C-linearis_contig7:3734878..3735002Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3734879..3735002 -
1622930331.0318677-CDS-C-linearis_contig7:3735474..37356451622930331.0318677-CDS-C-linearis_contig7:3735474..3735645Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3735475..3735645 -
1690881016.0419798-CDS-C-linearis_contig7:3735474..37356451690881016.0419798-CDS-C-linearis_contig7:3735474..3735645Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3735475..3735645 -
1622930331.0478325-CDS-C-linearis_contig7:3736165..37363601622930331.0478325-CDS-C-linearis_contig7:3736165..3736360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3736166..3736360 -
1690881016.0536325-CDS-C-linearis_contig7:3736165..37363601690881016.0536325-CDS-C-linearis_contig7:3736165..3736360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3736166..3736360 -
1622930331.0650582-CDS-C-linearis_contig7:3736689..37368931622930331.0650582-CDS-C-linearis_contig7:3736689..3736893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3736690..3736893 -
1690881016.063289-CDS-C-linearis_contig7:3736689..37368931690881016.063289-CDS-C-linearis_contig7:3736689..3736893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3736690..3736893 -
1622930331.0860646-CDS-C-linearis_contig7:3737299..37374631622930331.0860646-CDS-C-linearis_contig7:3737299..3737463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3737300..3737463 -
1690881016.074345-CDS-C-linearis_contig7:3737299..37374631690881016.074345-CDS-C-linearis_contig7:3737299..3737463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3737300..3737463 -
1622930331.1008172-CDS-C-linearis_contig7:3737776..37379591622930331.1008172-CDS-C-linearis_contig7:3737776..3737959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3737777..3737959 -
1690881016.084112-CDS-C-linearis_contig7:3737776..37379591690881016.084112-CDS-C-linearis_contig7:3737776..3737959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 3737777..3737959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14610.1

>prot_C-linearis_contig7.14610.1 ID=prot_C-linearis_contig7.14610.1|Name=mRNA_C-linearis_contig7.14610.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=347bp
MGRSSPRRRGPRRRGLQLERSSSPNGDHAHHQQHQYATPLPKPYMKQVKL
HPSGCQQWSSQTVAAGGTYMAYASTLTTYVYDARDFSLVTILGGNDCNVH
SLLWHPTNSHRVLVFSNNGRGSEWDVRSEKRVADFDVGAPPACSAWDPVN
PANLAVVSRGANETHLMRNEDSGRGGFCRGYTRRSSDQSLRATCTKWSQY
EYGTLVTGWTDGRVSFSEASASSGNGGGKGGKTKLVFPAEECGSVVDLSR
HDPNGGPYVLVGYSSGTVVLWDAAGHCSIATFDRCIVGLAGIRWMAWAPG
NFLALSSKSGVAKMFNISQKHPIGTVKLGETGSGVRDMAWLPSQAR*
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mRNA from alignment at C-linearis_contig7:3734879..3737959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14610.1 ID=mRNA_C-linearis_contig7.14610.1|Name=mRNA_C-linearis_contig7.14610.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3081bp|location=Sequence derived from alignment at C-linearis_contig7:3734879..3737959- (Chordaria linearis ClinC8C monoicous)
ATGGGGAGAAGCAGCCCCAGGCGACGTGGACCCCGGCGACGTGGACTCCA GCTGGAAAGAAGCTCCTCGCCGAACGGGGATCATGCGCATCATCAGCAGC ACCAGTATGCCACTCCGCTGCCGAAGCCTTACATGAAGCAGGTCAAGCTG CACCCGTCGGGGTGTCAACAGTGGTCCTCACAGGTATGTGCTAACAAACG AAGGTAGACGCACGTGCAAATGGCAGATGAACATAGAACCGGATTCTGCG ACTAGCCTAGACTAGACTAGATAGTCTCCACGATGTGTCGAAAGTTTGGT ACGTTGCACCCAAAACAACGGTGGGTTTCTGCCTGTGAGATTCCTGCCGA TCTTCACATTTTTTTGTGCAGCAAACGGGGTGTTGAATATCTAGACTATA GCAGTCGAGCGACGTAAACGTTTGGTACACCTGGTCTCGTTTGAAGTCAC AGAAACAAATATTGCTTCTTCTTTTTTCTTTTTTTGCACCCGGCAGACTG TTGCGGCAGGGGGGACCTACATGGCGTACGCGTCAACTCTGACAACATAT GTGTATGATGCAAGAGATTTTTCGCTAGTGACCATCCTCGGTGGCAACGA TTGCAACGTGCACTCCCTACTTTGGCACCCCACCAACTCCCACCGAGTTC TGGTTTTTAGGTGAGGGTGTTGCAAGAACAGTTTGAGCTTGGCGGACAGC CTGTCCCACATGTTGTCAGTCCGTAGGCTCGCACCTGATCGATCTCAGAT TGTGTATTTACTTTTCAGGCAAAGTCGCGCCCTTGATGTTGTAGTCTAGA CATGAGCTACGAGGCACACAACCACACACATACCTATTGGATGGACCGCA CTCAATTATCTCAAGTATTTTCAGCGCAGGTAGTCGACCGGCCGGTCTTG GCTGGCAAGTACTTTGCCTCCAACCACTATAACGACATTGCCGACCACGA GCAACAATGAAATCACGTTAAAACGGCATTCTACCTCGACGGCTGGGATG CCGAGGTTGCCCCACTGCTACTCATATTTCAACGTTGTATCTTGTTGCTT CCTCGTGGCACCACAGCAACAATGGCAGAGGTTCTGAGTGGGATGTGCGG TCAGAAAAGCGGGTAGCCGATTTCGATGTCGGTGCTCCGCCGGCGTGTTC CGCCTGGGATCCTGTGAACCCCGCCAACCTTGCTGTTGTTTCCAGAGGAG CCAATGAGACGCATTTGATGCGCAATGAGGATTCTGGAAGGGGGGGCTTT TGCAGGGGCTACACTAGAAGGTACTCATGCAGCTGGCGCACCCAAACTTT GGGATCGGGTTGCTTTTGTTACAATTTAATCATGAACACGCGCCACCCTT CCCCCGTTCTAGGGACGAGACCGCCCCATTTTCTGCCACTACGTTTGCCA CGTTTGCCTCTTTCCACGGCCTTCGCGAATTAGTTGACTCTGTTCCTCGT GTAGCTTTCGCTTTCCCGAATCGAAATATTCCACGACAGGACACGTTTTT CGGCTTTCTTGGCTTTGGCGGCAACTATGCATGTCTAATCCAATGCATGC CCCGTGCCGTTCCAATTCACGAATCCAAACAACGACGAAACCATCCAAGG TCATCCGACCAATCCTTGCGAGCCACGTGCACGAAGTGGAGCCAGTACGA ATACGGCACTTTGGTCACGGGGTGGACGGATGGGCGCGTTTCTTTCTCGG AGGCTTCTGCTTCTAGCGGAAACGGCGGCGGTAAAGGAGGGAAGACGAAG CTCGTTTTTCCAGCCGAAGAATGTGGTTCCGTTGTCGACCTCAGGTATAT TGTAGCAAGCCGAGACACCAAACGTGATAGTATGTTGTGCTTCGGGGGGG GGATTCACAGCAGTACGCCCTTGGAAGACACATCGTTACTTTTCGTCGTG GGGGACGCGAGCCGTCGGAGGGTTAGGGAAAAATCAGCCTGTCCGACCCA GAGCAAACTGCCTCACTCAAGCACAACACGCGTGTCTTTGAGACTGGTGC ATGTATTCATGTTTCCCTCCGGAATCTAGGGGAACTGACTATCAGGTGCT CTGACCAGCACTCTCGAGCGAAAGAGGGGTGCTTGGTGTAGGTGGTGGGT AGAGAGCGGGTTTAATCGACCCGACGACAGCGTGCACAACGCCGTCAACA AACGCAAAACCCTGCCATATATTTATAGACACCGCCCCACGTCTCTCGGT CCCCAACCCATGTCCGTTTCGGGTACAGTAGGCCCCGCCCGAATATATCG TCCAGACGCTAACATCATCCGATGCCCTTGTTCCGAATTGGTTCCTCGCT GTCTTCCCTCTGAGCAGGCATGATCCAAACGGAGGCCCGTATGTGCTGGT CGGATACAGCTCCGGGACTGTGGTGCTGTGGGACGCCGCCGGCCACTGTT CCATTGCCACGTTTGACCGCTGCATCGTGGGCTTGGCTGGAATTCGGTGG ATGGCCTGGGCGCCAGGAAATTTTTTAGCGCTAAGGTGGGTTTGCATGCA GAGAAGTGCATCGCTTAGGTGAGAGAGGGACACGCCTTTCACCTTCGCGG GACAGATCAGTGCAGCGGGATTAATATAATAGCACAGGAGGCCATCGACC ATTCCTAACGGCAGTATTTTAGGCTTTTCTTGGCGTCGGCAGCACCACTT GTCGGACCAGTCGCCCTTGAGTACAAGCAGACGCGATAGATGCACCGTAG TGGGACGTTTGGCGTCATCGCCGTACTCGAAGAACATCGCTCTTGGCCCA CCAATTTGCGGCACTTGTGCCGTCTAATAAATTGGACGTTTGTTGCACGA AGCTCTTCTTGGCACCTCGACCAACAAGTTGTTGCAAGAACACGCTACAA CCGGTCGTTTCTTGCCCTTGACCCTAGAGCTGTCATCGTGGTCGCTAAAA AGCGCGCGCCTTCCGTCCGTTGCTATCAAATAATCCAGTTCCCTCCCTTT CATTCAGCTCCAAGTCAGGCGTGGCAAAGATGTTCAACATATCGCAGAAG CATCCCATCGGGACCGTCAAGCTGGGCGAGACAGGGAGCGGCGTGAGAGA CATGGCCTGGCTCCCCTCACAGGCGCGTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig7:3734879..3737959-

>mRNA_C-linearis_contig7.14610.1 ID=mRNA_C-linearis_contig7.14610.1|Name=mRNA_C-linearis_contig7.14610.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at C-linearis_contig7:3734879..3737959- (Chordaria linearis ClinC8C monoicous)
ATGGGGAGAAGCAGCCCCAGGCGACGTGGACCCCGGCGACGTGGACTCCA
GCTGGAAAGAAGCTCCTCGCCGAACGGGGATCATGCGCATCATCAGCAGC
ACCAGTATGCCACTCCGCTGCCGAAGCCTTACATGAAGCAGGTCAAGCTG
CACCCGTCGGGGTGTCAACAGTGGTCCTCACAGATGGGGAGAAGCAGCCC
CAGGCGACGTGGACCCCGGCGACGTGGACTCCAGCTGGAAAGAAGCTCCT
CGCCGAACGGGGATCATGCGCATCATCAGCAGCACCAGTATGCCACTCCG
CTGCCGAAGCCTTACATGAAGCAGGTCAAGCTGCACCCGTCGGGGTGTCA
ACAGTGGTCCTCACAGACTGTTGCGGCAGGGGGGACCTACATGGCGTACG
CGTCAACTCTGACAACATATGTGTATGATGCAAGAGATTTTTCGCTAGTG
ACCATCCTCGGTGGCAACGATTGCAACGTGCACTCCCTACTTTGGCACCC
CACCAACTCCCACCGAGTTCTGGTTTTTAGACTGTTGCGGCAGGGGGGAC
CTACATGGCGTACGCGTCAACTCTGACAACATATGTGTATGATGCAAGAG
ATTTTTCGCTAGTGACCATCCTCGGTGGCAACGATTGCAACGTGCACTCC
CTACTTTGGCACCCCACCAACTCCCACCGAGTTCTGGTTTTTAGCAACAA
TGGCAGAGGTTCTGAGTGGGATGTGCGGTCAGAAAAGCGGGTAGCCGATT
TCGATGTCGGTGCTCCGCCGGCGTGTTCCGCCTGGGATCCTGTGAACCCC
GCCAACCTTGCTGTTGTTTCCAGAGGAGCCAATGAGACGCATTTGATGCG
CAATGAGGATTCTGGAAGGGGGGGCTTTTGCAGGGGCTACACTAGAAGCA
ACAATGGCAGAGGTTCTGAGTGGGATGTGCGGTCAGAAAAGCGGGTAGCC
GATTTCGATGTCGGTGCTCCGCCGGCGTGTTCCGCCTGGGATCCTGTGAA
CCCCGCCAACCTTGCTGTTGTTTCCAGAGGAGCCAATGAGACGCATTTGA
TGCGCAATGAGGATTCTGGAAGGGGGGGCTTTTGCAGGGGCTACACTAGA
AGGTCATCCGACCAATCCTTGCGAGCCACGTGCACGAAGTGGAGCCAGTA
CGAATACGGCACTTTGGTCACGGGGTGGACGGATGGGCGCGTTTCTTTCT
CGGAGGCTTCTGCTTCTAGCGGAAACGGCGGCGGTAAAGGAGGGAAGACG
AAGCTCGTTTTTCCAGCCGAAGAATGTGGTTCCGTTGTCGACCTCAGGTC
ATCCGACCAATCCTTGCGAGCCACGTGCACGAAGTGGAGCCAGTACGAAT
ACGGCACTTTGGTCACGGGGTGGACGGATGGGCGCGTTTCTTTCTCGGAG
GCTTCTGCTTCTAGCGGAAACGGCGGCGGTAAAGGAGGGAAGACGAAGCT
CGTTTTTCCAGCCGAAGAATGTGGTTCCGTTGTCGACCTCAGCAGGCATG
ATCCAAACGGAGGCCCGTATGTGCTGGTCGGATACAGCTCCGGGACTGTG
GTGCTGTGGGACGCCGCCGGCCACTGTTCCATTGCCACGTTTGACCGCTG
CATCGTGGGCTTGGCTGGAATTCGGTGGATGGCCTGGGCGCCAGGAAATT
TTTTAGCGCTAAGCAGGCATGATCCAAACGGAGGCCCGTATGTGCTGGTC
GGATACAGCTCCGGGACTGTGGTGCTGTGGGACGCCGCCGGCCACTGTTC
CATTGCCACGTTTGACCGCTGCATCGTGGGCTTGGCTGGAATTCGGTGGA
TGGCCTGGGCGCCAGGAAATTTTTTAGCGCTAAGCTCCAAGTCAGGCGTG
GCAAAGATGTTCAACATATCGCAGAAGCATCCCATCGGGACCGTCAAGCT
GGGCGAGACAGGGAGCGGCGTGAGAGACATGGCCTGGCTCCCCTCACAGG
CGCGTTGACTCCAAGTCAGGCGTGGCAAAGATGTTCAACATATCGCAGAA
GCATCCCATCGGGACCGTCAAGCTGGGCGAGACAGGGAGCGGCGTGAGAG
ACATGGCCTGGCTCCCCTCACAGGCGCGTTGA
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