mRNA_C-linearis_contig7.14542.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig7.14542.1
Unique Name	mRNA_C-linearis_contig7.14542.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig7.14542.1 vs. uniprot
Match: D7G1V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V8_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.440e-65
Identity = 121/201 (60.20%), Postives = 147/201 (73.13%), Query Frame = 1

Query:  391 LTDPDVLREYRKNWTVEKDCVRPVRFRTDAVTSSNTGVPARFRVTETRKLPGAPKAAERLRQKVLESGPMGVVRLRQALQQRVQQADVPAGAGDGSCQRLVQASNLMDGLIDAGLTTLSALDAKKVIE-CFGTGENANGSSGGGATVSDVFEGLGLGSPTMDEKQSRAVTDAFRELDEDGSGVLRAGNLRRRYDAAAASLR 990
            +TDPD LREYR+NWTVE DCVRPVRF+TDAVTS+NTGVPARFR++E RKLPG PKA ERLR K LE G MG+VRL QALQ+R+Q         D +  RL+Q ++LM+GL  AGLT L+A DAKKVIE C   G++       GA+++DV E L  G P  D+ + +AV  AFRELDE GSG++ A  L+RRYDAAAAS R
Sbjct:    1 MTDPDKLREYRRNWTVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLHQALQRRLQANHTEPRTSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKVIEFCTKGGDD-------GASITDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGLKRRYDAAAASTR 194

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BLAST of mRNA_C-linearis_contig7.14542.1 vs. uniprot
Match: A0A482S5Q3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Q3_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 7.350e-12
Identity = 55/160 (34.38%), Postives = 76/160 (47.50%), Query Frame = 1

Query:   22 GSNSLRGGKKHYGPKTKCGNWVE-LDKEPGQTLPAGFPHAMYKTDAHQQMLEGVFQRPKRFGAGLPPA-EDTKIDYSRVINYDKQQRDAKWAAITTTEFVAPGDGSEKARQLSKEFAPSFKLTGGLTDPDVLREYRKNWTVEKDCVRPVRFRTDAVTSSN 495
            G N LRGG K + PKT  G W++ L    G     GF  + Y+T+A  Q    + Q    FGAGLP   + T+ D        K   +  WA  T T+ +     S+     SK++     L   +   D L EYR+NWT+E D +R VRF T+   SS+
Sbjct:   12 GQNGLRGGIKTFAPKTITGPWLDALGGTAGYKR--GFTTSEYETEAQHQQKGALLQNEPEFGAGLPDELQLTRPDSPFKYTVSKYNNENVWA--TNTKLM-----SQVLLTQSKDYEVPTALKPRMP-ADKLEEYRRNWTIESDAMRDVRFATETRISSS 161

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig7.14542.1 vs. uniprot

BLAST of mRNA_C-linearis_contig7.14542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G1V8_ECTSI	1.440e-65	60.20	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A482S5Q3_9ARCH	7.350e-12	34.38	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig7	contig	C-linearis_contig7:3025952..3029912 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	93.6
Seed ortholog evalue	2.3e-16
Seed eggNOG ortholog	112098.XP_008619472.1
Hectar predicted targeting category	other localisation
EggNOG OGs	2CNKE@1,2S413@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	9
Model size	1203
Cds size	1203
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig7.14542.1	prot_C-linearis_contig7.14542.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig7 3025952..3029912 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig7:3025952..3029912-
coding sequence from alignment at C-linearis_contig7:3025952..3029912-

protein sequence of mRNA_C-linearis_contig7.14542.1

>prot_C-linearis_contig7.14542.1 ID=prot_C-linearis_contig7.14542.1|Name=mRNA_C-linearis_contig7.14542.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=401bp
MLGLQQGGSNSLRGGKKHYGPKTKCGNWVELDKEPGQTLPAGFPHAMYKT
DAHQQMLEGVFQRPKRFGAGLPPAEDTKIDYSRVINYDKQQRDAKWAAIT
TTEFVAPGDGSEKARQLSKEFAPSFKLTGGLTDPDVLREYRKNWTVEKDC
VRPVRFRTDAVTSSNTGVPARFRVTETRKLPGAPKAAERLRQKVLESGPM
GVVRLRQALQQRVQQADVPAGAGDGSCQRLVQASNLMDGLIDAGLTTLSA
LDAKKVIECFGTGENANGSSGGGATVSDVFEGLGLGSPTMDEKQSRAVTD
AFRELDEDGSGVLRAGNLRRRYDAAAASLRGAMAETDAGTGSSCPAQVAR
KALLNNFSLHQDAGEDGMTSAGFEGFMADASWGAQSDSDFDAVLRALVGK
*

mRNA from alignment at C-linearis_contig7:3025952..3029912-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig7.14542.1 ID=mRNA_C-linearis_contig7.14542.1|Name=mRNA_C-linearis_contig7.14542.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3961bp|location=Sequence derived from alignment at C-linearis_contig7:3025952..3029912- (Chordaria linearis ClinC8C monoicous)
ATGTTGGGTTTGCAGCAGGGAGGGTCGAACTCTCTAAGAGGCGGGAAAAA
GCACTATGGGCCAAAAACGAAGGTGTGTCGGCAGCGCAATTGTTTGGAAC
GTACTGCTGTATGTAGTAGATCACAAGAGTGCAGACGAGGGGACAAAGGG
GGCGTATTTTTCCGAACTTATTATTTGCTGTGCAAAAGGTATCGCCTTTG
GCTCGATTCATCAGCAGAGAGCTGGTGCATGTACCGCAAAATCCATAGCA
AACACGACCCGGGTCAGCCGACACGTACCAAGGACAATGGCAATCTACGT
ACTTCATCCTGGTGCCGACCTCCGCGGGACGATCTACTACCAATCGTCGC
TCGTAAAGAGGACTGTTCCTACATGCAGAAGTTTCCCAGAACAAAGTCTA
AATACTTGTACCGCAAACGAGAAATAGTGACAGCTCAACATTCAGACAAA
AAAAAACAAGAAACGCGTAGAAATGCGGTATACGTAGTAAGTACGTAGGC
GGCTTAGAATAGGCGTGAGCGTTTCCAGAGCATTCAGTATTCACAACGTT
CAGTATGTAGCGACAAGGAATTAAACCGCGAAATGCAGAATTTGCGCCCT
TTTCCTGGAGAAGTTCTGACCCGGAGTCATACACAAATCATCACCGTACA
GTCTGTACGTTGCACGTAGTAGGTGGTGCAAATCTCACACACGGCCACCA
CGCCCTTACTGACCCAAACTTCCAGTGCGGGAACTGGGTGGAGCTAGACA
AGGAGCCGGGACAAACGCTTCCTGCAGGGTTTCCGCATGCTATGTACAAG
ACTGACGCGCACCAGCAAATGCTCGAAGGTGTCTTTCAGCGACCCAAGAG
GTATGATAGGACACGTTGTGGGGGGAAATAACAAGATGGGTTTTGTGTGC
GTGAATCGGTGCGACGATGTGGCATCTACGCGATAAGACTTGGGAATGCG
GTGTCAGTGGGTTTTCTGGTGTGATCGGCTTGATTGTCTCGGTCAAAGTG
GTCAGTCCTTGCCTGAAAGAACAGTTCGGGAACCATTATGTTCCACCCTA
GGATCTGGTACACTTCAGGCCTTGGGATAAAAGTGCAAACACACATTAAA
ACATTCCCTTGGCAATGCCGATGCCGAAATGAATCAGATTTGGCGCCGGG
CTGCCCCCCGCGGAGGACACCAAAATCGACTACAGCCGGGTAATAAACTA
CGATAAGCAACAGAGAGACGCGAAGTGGGCCGCTATCACCACCACCGAGT
TTGTCGCCCCGGGGGATGGCAGCGAAAAGGCACGCCAGCTGGTTTGTGTG
ACTGACATTGCAAGGGCGATTTTGTCTGTTGAAGTCACAATTAGTCAAGC
CAACATGCGTCACTGTGAGGTAGGTTTAGGGTTGGGGTGAACGTTGAATA
GCTGTTCGAAACAGGACAGGAACAGCGCGACCCACCAAGTTGCGGTACGG
CGCCAACTGCTCGAGATTTACCGTATGTATTTGTCCCGGGTGGTATTGCC
GATCGCCCGTCCCCGATCAGAGCAAGGAATTCGCCCCCAGTTTCAAGCTG
ACGGGTGGCCTGACCGATCCCGACGTACTGAGAGAGTACCGCAAAAACTG
GTGAGCACAGCAGAAATCCAAAAGGAAGCTTGAGGACAGTTTCTGCTTTG
CTTGTGTTTTCTTTGTCCACTTGTGAGACCCCCGCTATCTTGAAACGCTG
GCCCCTCCAGTCCATAGACGTTTTGAGACAACAACGGGGTGCGACACCCC
AAGACTTGAGGGAAAGTGTGCGCCAGGTAACAAAAAAAACGCCAGTGTGC
ACTCGAGTGTATTTCTGCGGGCCGTCGCAAACAAAAACCTCGGTCATTGT
ATCATGACTTGGGGGTCTTCTGTGACAAAAAATTGGCGGGAGGAGAGAGC
TTCGATCGGAATTGGAACATTGTCAATTTCCGCGCACTTTGCGTCGTGGT
CAGCACCCCCGCTCTCGGTCGTCGAAATCGTCCAGAAACGGGTGTGATGT
GCATGTGCCAGATTCAGGGTCGGTCCTACAGCGGTAGCATGAACCCTAAA
CCACGGTACAACTCTCGACACCCAACCCGTGCCTCTTCCCCCAAATGAAA
CCAAACGAAACTGCCCGGGAAAACCAGGACCGTGGAGAAAGACTGCGTGC
GCCCCGTCCGCTTCAGAACCGACGCGGTGACCAGCTCCAACACCGGTGTT
CCTGCCCGCTTCCGCGTGACCGAGACGAGAAAGCTTCCCGGAGCACCCAA
GGCTGCGGAGAGACTTCGCCAAAAGGTATAGCCCGTCCATGACGTCCGTG
TCGATTCGACTCGATTCATCCATGACGGTGTGAACCGAAGTGCATGAGCG
CGTGTATGGTTCGTATGGGTTCGCTCACCATCCCCTCGGGTTTTGTTGTG
CAACAAGGACGTATGCTCGTGTATTCTCTCAATTTTTTCGAGACCGGCCG
TCTTCGCAAGGGGGAGATGAAAACGTTCTCCTCGACCAGGCGCCGCTCGA
ATCGACATTTCTTTCGCGAGCTTCTCGCAAGAGGTGCTAGACAGCACACT
CCCTCCGTCTAACTGCAGTGCAGCTGCTGGTCTCGTACCCGGAAGTGGGT
GCCCAATAGGCTAACTTCTTCGAAAGCACCTCCGACCGCTTCCCGTTTTA
CTGTGCATACCTGATCTCGTCCCTGCTGTTAATCCGCTCCGCTGCGGTGC
GTGTAGGTTCTCGAGAGTGGGCCGATGGGAGTGGTTCGACTGCGCCAGGC
GCTGCAGCAGCGGGTACAACAAGCAGATGTACCCGCTGGGGCTGGTGATG
GTTCGTGCCAGAGGCTGGTGCAGGCAAGCAACCTGATGGACGGGCTTATA
GACGCTGGGCTGACGACGCTGTCTGCACTAGACGCGAAAAAGGTAGGATA
TTAGAGCCACATCTACCTGCCGGGAAAATTAGTCGCCTTCCGCATATGCA
CCACCATGGCCTCTTTTCGGCGGGGGTTTAAGTTCTAGAACGCTCAGGCG
GGAAGGCAATCTACATAATAAACTGTTCACCATCCCGTCCCTCCTTTTCC
CGGGAAGCATGGAGTAGATGGTTGGTTGTTGTCACCAATCCGAATCGTGC
CAAGCACATCTGCCTTCGCAGCAGTACCATCGAACAAAGGAAAAAATGCT
GCTTTCGCCGCAGGTGATTGAGTGTTTCGGGACAGGAGAGAATGCCAACG
GCAGCAGCGGCGGCGGCGCGACGGTGAGCGACGTTTTTGAGGGGCTTGGT
CTCGGTAGCCCGACGATGGACGAGAAACAGAGCCGAGCGGTAACGGATGC
CTTCCGGGAGTTGGACGAGGACGGTTCGGGTGTTCTCAGAGCGGGAAATC
TACGGAGGCGCTACGATGCTGCTGCTGCTTCTTTGTCCTGCAACGCCGGG
TAAATATTTGACAATGTTACCGCCAATTGTGTACATTTGTGTTTCTGGTG
AGGTTCGTTGCTTTGTTTTCGGTTGATTGAGCACGAGAGGAAGATTAACT
GCTGTTCGATATCGTGCGCCCTCATTGCTCTCATCTACTCGTGTACGGCC
GCAACCGCGGTGCCATCTGGTGACCCCTCAGGCGCGGTGCTATGGCTGAA
ACTGATGCCGGCACTGGATCTAGCTGCCCGGCGCAAGTGGCACGAAAGGC
TCTGTTGAACAACTTTTCGCTCCACCAGGTGAATGATCCTATCGCTCGCT
AGGCTAAGGAAGACACCAGACTACCCTTCGGCTACTGCTGCGGTTTTTTT
GCTGGTTGGGCGTGCTGGGCGTTGCGCACGAGTCGTTAAAATTTTCCGAT
TCCCTTGCGTCCACTGCCTCCACCTGGGACGTCAACACCAGGATGCCGGA
GAGGATGGAATGACGAGTGCGGGGTTCGAAGGGTTCATGGCAGACGCTTC
GTGGGGTGCGCAAAGCGACTCCGATTTCGACGCTGTGCTGCGTGCCTTAG
TCGGAAAGTGA

Coding sequence (CDS) from alignment at C-linearis_contig7:3025952..3029912-

>mRNA_C-linearis_contig7.14542.1 ID=mRNA_C-linearis_contig7.14542.1|Name=mRNA_C-linearis_contig7.14542.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at C-linearis_contig7:3025952..3029912- (Chordaria linearis ClinC8C monoicous)
ATGTTGGGTTTGCAGCAGGGAGGGTCGAACTCTCTAAGAGGCGGGAAAAA
GCACTATGGGCCAAAAACGAAGATGTTGGGTTTGCAGCAGGGAGGGTCGA
ACTCTCTAAGAGGCGGGAAAAAGCACTATGGGCCAAAAACGAAGTGCGGG
AACTGGGTGGAGCTAGACAAGGAGCCGGGACAAACGCTTCCTGCAGGGTT
TCCGCATGCTATGTACAAGACTGACGCGCACCAGCAAATGCTCGAAGGTG
TCTTTCAGCGACCCAAGAGTGCGGGAACTGGGTGGAGCTAGACAAGGAGC
CGGGACAAACGCTTCCTGCAGGGTTTCCGCATGCTATGTACAAGACTGAC
GCGCACCAGCAAATGCTCGAAGGTGTCTTTCAGCGACCCAAGAGATTTGG
CGCCGGGCTGCCCCCCGCGGAGGACACCAAAATCGACTACAGCCGGGTAA
TAAACTACGATAAGCAACAGAGAGACGCGAAGTGGGCCGCTATCACCACC
ACCGAGTTTGTCGCCCCGGGGGATGGCAGCGAAAAGGCACGCCAGCTGAT
TTGGCGCCGGGCTGCCCCCCGCGGAGGACACCAAAATCGACTACAGCCGG
GTAATAAACTACGATAAGCAACAGAGAGACGCGAAGTGGGCCGCTATCAC
CACCACCGAGTTTGTCGCCCCGGGGGATGGCAGCGAAAAGGCACGCCAGC
TGAGCAAGGAATTCGCCCCCAGTTTCAAGCTGACGGGTGGCCTGACCGAT
CCCGACGTACTGAGAGAGTACCGCAAAAACTGAGCAAGGAATTCGCCCCC
AGTTTCAAGCTGACGGGTGGCCTGACCGATCCCGACGTACTGAGAGAGTA
CCGCAAAAACTGGACCGTGGAGAAAGACTGCGTGCGCCCCGTCCGCTTCA
GAACCGACGCGGTGACCAGCTCCAACACCGGTGTTCCTGCCCGCTTCCGC
GTGACCGAGACGAGAAAGCTTCCCGGAGCACCCAAGGCTGCGGAGAGACT
TCGCCAAAAGGACCGTGGAGAAAGACTGCGTGCGCCCCGTCCGCTTCAGA
ACCGACGCGGTGACCAGCTCCAACACCGGTGTTCCTGCCCGCTTCCGCGT
GACCGAGACGAGAAAGCTTCCCGGAGCACCCAAGGCTGCGGAGAGACTTC
GCCAAAAGGTTCTCGAGAGTGGGCCGATGGGAGTGGTTCGACTGCGCCAG
GCGCTGCAGCAGCGGGTACAACAAGCAGATGTACCCGCTGGGGCTGGTGA
TGGTTCGTGCCAGAGGCTGGTGCAGGCAAGCAACCTGATGGACGGGCTTA
TAGACGCTGGGCTGACGACGCTGTCTGCACTAGACGCGAAAAAGGTTCTC
GAGAGTGGGCCGATGGGAGTGGTTCGACTGCGCCAGGCGCTGCAGCAGCG
GGTACAACAAGCAGATGTACCCGCTGGGGCTGGTGATGGTTCGTGCCAGA
GGCTGGTGCAGGCAAGCAACCTGATGGACGGGCTTATAGACGCTGGGCTG
ACGACGCTGTCTGCACTAGACGCGAAAAAGGTGATTGAGTGTTTCGGGAC
AGGAGAGAATGCCAACGGCAGCAGCGGCGGCGGCGCGACGGTGAGCGACG
TTTTTGAGGGGCTTGGTCTCGGTAGCCCGACGATGGACGAGAAACAGAGC
CGAGCGGTAACGGATGCCTTCCGGGAGTTGGACGAGGACGGTTCGGGTGT
TCTCAGAGCGGGAAATCTACGGAGGCGCTACGATGCTGCTGCTGCTTCTT
TGTGATTGAGTGTTTCGGGACAGGAGAGAATGCCAACGGCAGCAGCGGCG
GCGGCGCGACGGTGAGCGACGTTTTTGAGGGGCTTGGTCTCGGTAGCCCG
ACGATGGACGAGAAACAGAGCCGAGCGGTAACGGATGCCTTCCGGGAGTT
GGACGAGGACGGTTCGGGTGTTCTCAGAGCGGGAAATCTACGGAGGCGCT
ACGATGCTGCTGCTGCTTCTTTGCGCGGTGCTATGGCTGAAACTGATGCC
GGCACTGGATCTAGCTGCCCGGCGCAAGTGGCACGAAAGGCTCTGTTGAA
CAACTTTTCGCTCCACCAGGCGCGGTGCTATGGCTGAAACTGATGCCGGC
ACTGGATCTAGCTGCCCGGCGCAAGTGGCACGAAAGGCTCTGTTGAACAA
CTTTTCGCTCCACCAGGATGCCGGAGAGGATGGAATGACGAGTGCGGGGT
TCGAAGGGTTCATGGCAGACGCTTCGTGGGGTGCGCAAAGCGACTCCGAT
TTCGACGCTGTGCTGCGTGCCTTAGTCGGAAAGTGAGATGCCGGAGAGGA
TGGAATGACGAGTGCGGGGTTCGAAGGGTTCATGGCAGACGCTTCGTGGG
GTGCGCAAAGCGACTCCGATTTCGACGCTGTGCTGCGTGCCTTAGTCGGA
AAGTGA