mRNA_C-linearis_contig7.14527.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14527.1
Unique NamemRNA_C-linearis_contig7.14527.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: D7G1U2_ECTSI (Glycine cleavage system H protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U2_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 5.260e-78
Identity = 132/170 (77.65%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 MASVAVSRFGGAVRSSGAAMRAMRTMAGPSP-LARAGWIAGG-GNKRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVPDTLLDSAAYEALCEES 504
            MASVAV+RF GA+RS GAA+R MR   GPSP LAR GW+A G GNKRCMSTVY+ESHEYLT +GDT KVGITAFAAKALGD+VFVDLPEVGD  EAG+SFGSVESVKAASDVY+P SGEVLE+NE LT++PGILNEDPMGKGWF+KIK+T   PDTL+D AAYE  CE+S
Sbjct:    1 MASVAVARFSGALRS-GAAVRTMRAFTGPSPSLARTGWLAAGAGNKRCMSTVYAESHEYLTVEGDTAKVGITAFAAKALGDVVFVDLPEVGDELEAGDSFGSVESVKAASDVYSPASGEVLEVNEALTESPGILNEDPMGKGWFIKIKMTEPAPDTLMDPAAYETHCEDS 169
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A1V9ZWQ1_9STRA (Glycine cleavage system H protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWQ1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.080e-39
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 1 
Query:  130 KRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVPDT-LLDSAAYEALCE 498
            +R  ST Y+  HEYLT  GD G +GIT FA  ALGD+V+VDLP++G+ F  G+SFGSVESVKAASDVY PVSGEV+ INE L D+P ++NE P+  GWF+KIK++     T LLD  AY+  CE
Sbjct:   14 RRAFSTKYTPQHEYLTIKGDEGTIGITDFAQNALGDVVYVDLPKIGEKFSKGDSFGSVESVKAASDVYVPVSGEVIAINENLVDSPNLVNESPLEDGWFIKIKLSDAAEATELLDEEAYKTHCE 137
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A7S2WUU3_9STRA (Glycine cleavage system H protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUU3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.480e-39
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:  121 GGNKRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVP-DTLLDSAAYEALCE 498
            GG  R  ST ++ESHEY+  DGD G +GITA AA+ALGDIV+VDLP+ G  +E  ESFGSVESVKAASDVY PV+GEV+E+NE L+D+P ++NE P+  GWF+KIK++     + L+D  AY+  C+
Sbjct:   44 GGLARPFSTYFAESHEYIKMDGDVGTIGITAHAAEALGDIVYVDLPDEGSDYEQKESFGSVESVKAASDVYVPVAGEVVEVNEELSDSPSLVNESPLEDGWFVKIKVSDKSQLEGLMDEGAYKTFCD 170
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A7S2BEF1_9STRA (Glycine cleavage system H protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BEF1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.690e-39
Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 1 
Query:   55 AMRAMRTMAGPSPLARAGWIAGGGNKRC--MSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVP-DTLLDSAAYEALCEE 501
            A  A R+ A  +P +R   I       C  +ST Y+ESHEY+  +GD G VGITA AA ALGDIVFVDLP+VG  F+  +SFG+VESVKAASDVY+P+ GEV+E+NE L D P  +N+ PM  GWFMKIK++     + L+D AAYE  C E
Sbjct:   14 AANAARSFALSAPASRGATIRSLPRTFCRPLSTYYAESHEYVKVEGDIGTVGITAHAADALGDIVFVDLPDVGSEFKQTDSFGTVESVKAASDVYSPIDGEVVEVNEVLEDEPETVNDSPMEHGWFMKIKMSDSSQLEGLMDDAAYEKFCVE 165
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A6G0XLN1_9STRA (Glycine cleavage system H protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLN1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.130e-38
Identity = 71/127 (55.91%), Postives = 92/127 (72.44%), Query Frame = 1 
Query:  130 KRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKI-TGDVPDTLLDSAAYEALCEESK 507
            +RC ST Y+ SHEYLT +G+ G +GIT FA  ALGD+V+V+LP VGD    GE FGSVESVKAASD+YAP SG+V+EINE L+D P ++NE P   GWF+KI++   D    +LD AAY+  C  ++
Sbjct:   20 RRCFSTKYTPSHEYLTLNGNVGTIGITDFAQNALGDVVYVELPAVGDQVTKGEVFGSVESVKAASDIYAPASGKVVEINEKLSDEPNLVNEGPTTTGWFIKIELDNADETTDMLDEAAYQEHCNNAE 146
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A836CGJ1_9STRA (Glycine cleavage system H protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.280e-38
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 1 
Query:  130 KRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKIT--GDVPDTLLDSAAYEALCEESK 507
            +R  S  ++ESHEY+  DGD G +GIT FAA  LG++VFV+LPEVG  F+  +SFGSVESVKAASDVY PV GE+  +NE L+++  ++N DPMG GWF KIKI   G++  +L+D AAY+A CE+SK
Sbjct:   37 RRWASYHFAESHEYVKVDGDVGTIGITQFAADNLGEVVFVELPEVGATFDKTDSFGSVESVKAASDVYMPVGGEITSVNEELSESQELVNNDPMGDGWFAKIKIADKGELA-SLMDEAAYKAFCEDSK 163
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A833L5E0_9HYPH (Glycine cleavage system H protein n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A833L5E0_9HYPH)

HSP 1 Score: 145 bits (366), Expect = 2.510e-37
Identity = 72/122 (59.02%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:  139 MSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVP-DTLLDSAAYEALCEE 501
            M+T Y++ HEYL  DGDT  VGIT +A   LGD+VFV+LP+VG +F+ G     VESVKAASDVYAPVSGE++ +N  L DTP  +NEDP GKGWFMKIK+        LLD AAY+AL  E
Sbjct:    1 MTTYYTKDHEYLRVDGDTATVGITNYAQAQLGDVVFVELPDVGKSFKQGAEAAVVESVKAASDVYAPVSGEIVAVNTSLPDTPATINEDPEGKGWFMKIKLANKAELAELLDEAAYKALIGE 122
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: UPI001FF679ED (glycine cleavage system protein GcvH n=1 Tax=Amycolatopsis sp. WQ 127309 TaxID=2932773 RepID=UPI001FF679ED)

HSP 1 Score: 145 bits (366), Expect = 2.760e-37
Identity = 67/118 (56.78%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:  151 YSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVPDTLLDSAAYEALCEES 504
            Y++ HE+L  +GD   VGITAFAA++LGDIVFV LP+VG    +GE FG VES K+ S++YAPVSGEV+E+N   +DTP ++N DP  +GW +K++++GDVP+ LLD+AAY AL +ES
Sbjct:    9 YTKEHEWLNVEGDVATVGITAFAAESLGDIVFVQLPDVGATITSGEVFGEVESTKSVSELYAPVSGEVVEVNGTTSDTPEVINSDPYAEGWLLKVRLSGDVPE-LLDAAAYAALTQES 125
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: UPI001E5D7D79 (glycine cleavage system protein GcvH n=1 Tax=Pseudodesulfovibrio sp. SF6 TaxID=2810563 RepID=UPI001E5D7D79)

HSP 1 Score: 145 bits (366), Expect = 2.840e-37
Identity = 67/117 (57.26%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:  148 VYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGDVPDTLLDSAAYEALCE 498
            +YS+SHE++  +GD   VGIT FA + LGD+ F++LPEVGD FEAG   GSVESVKAAS++YAPV+GE++E+NE L D P ++NE+P G GW +K KI G+ P+ LLD+ AY A+ E
Sbjct:    7 LYSKSHEWVMVEGDIATVGITHFAQEQLGDMTFIELPEVGDTFEAGSEMGSVESVKAASEIYAPVTGEIVEVNEALEDAPEMVNEEPYGDGWMLKFKIKGE-PEGLLDAEAYTAVVE 122
[Close]
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Match: A0A1V9YH61_9STRA (Glycine cleavage system H protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH61_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.400e-37
Identity = 73/124 (58.87%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:  130 KRCMSTVYSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGSVESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITG-DVPDTLLDSAAYEALCE 498
            +R  +T ++  HEYL  +G    VGIT FA  ALGDIV+VDLP VG  F  G+SFGSVESVKAASDVYAP SGEV+ INE LT +P ++NE P+  GWFMKIK+T     + LLD AAY   CE
Sbjct:   15 RRAFATKFTPEHEYLNINGGEATVGITDFAQNALGDIVYVDLPSVGQKFAKGDSFGSVESVKAASDVYAPASGEVIAINEALTSSPELVNESPLVDGWFMKIKLTNPSETEELLDEAAYATHCE 138
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U2_ECTSI5.260e-7877.65Glycine cleavage system H protein n=2 Tax=Ectocarp... [more]
A0A1V9ZWQ1_9STRA1.080e-3958.87Glycine cleavage system H protein n=1 Tax=Thrausto... [more]
A0A7S2WUU3_9STRA1.480e-3957.48Glycine cleavage system H protein n=1 Tax=Rhizochr... [more]
A0A7S2BEF1_9STRA4.690e-3953.95Glycine cleavage system H protein n=1 Tax=Dictyoch... [more]
A0A6G0XLN1_9STRA3.130e-3855.91Glycine cleavage system H protein n=1 Tax=Aphanomy... [more]
A0A836CGJ1_9STRA5.280e-3857.03Glycine cleavage system H protein n=1 Tax=Tribonem... [more]
A0A833L5E0_9HYPH2.510e-3759.02Glycine cleavage system H protein n=1 Tax=Beijerin... [more]
UPI001FF679ED2.760e-3756.78glycine cleavage system protein GcvH n=1 Tax=Amyco... [more]
UPI001E5D7D792.840e-3757.26glycine cleavage system protein GcvH n=1 Tax=Pseud... [more]
A0A1V9YH61_9STRA3.400e-3758.87Glycine cleavage system H protein n=1 Tax=Achlya h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2895313..2901292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue8.6e-66
Seed eggNOG ortholog2880.D7G1U2
Preferred nameGCVH
KEGG rclassRC00022,RC02834
KEGG koko:K02437
KEGG ReactionR01221
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.glycine decarboxylation via glycine cleavage system
EggNOG OGsCOG0509@1,KOG3373@2759
Ec32 ortholog descriptionGlycine cleavage system H protein
Ec32 orthologEc-07_004120.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons4
Model size2189
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14527.1prot_C-linearis_contig7.14527.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2896992..2901292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.1924465-UTR-C-linearis_contig7:2895312..28969911622930316.1924465-UTR-C-linearis_contig7:2895312..2896991Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2895313..2896991 -
1690881008.4874105-UTR-C-linearis_contig7:2895312..28969911690881008.4874105-UTR-C-linearis_contig7:2895312..2896991Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2895313..2896991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.2169614-CDS-C-linearis_contig7:2896991..28971321622930316.2169614-CDS-C-linearis_contig7:2896991..2897132Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2896992..2897132 -
1690881008.5018013-CDS-C-linearis_contig7:2896991..28971321690881008.5018013-CDS-C-linearis_contig7:2896991..2897132Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2896992..2897132 -
1622930316.2295294-CDS-C-linearis_contig7:2898094..28981791622930316.2295294-CDS-C-linearis_contig7:2898094..2898179Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2898095..2898179 -
1690881008.5119877-CDS-C-linearis_contig7:2898094..28981791690881008.5119877-CDS-C-linearis_contig7:2898094..2898179Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2898095..2898179 -
1622930316.246406-CDS-C-linearis_contig7:2899174..28992781622930316.246406-CDS-C-linearis_contig7:2899174..2899278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2899175..2899278 -
1690881008.5236237-CDS-C-linearis_contig7:2899174..28992781690881008.5236237-CDS-C-linearis_contig7:2899174..2899278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2899175..2899278 -
1622930316.2634444-CDS-C-linearis_contig7:2901112..29012921622930316.2634444-CDS-C-linearis_contig7:2901112..2901292Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2901113..2901292 -
1690881008.5325086-CDS-C-linearis_contig7:2901112..29012921690881008.5325086-CDS-C-linearis_contig7:2901112..2901292Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2901113..2901292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14527.1

>prot_C-linearis_contig7.14527.1 ID=prot_C-linearis_contig7.14527.1|Name=mRNA_C-linearis_contig7.14527.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=170bp
MASVAVSRFGGAVRSSGAAMRAMRTMAGPSPLARAGWIAGGGNKRCMSTV
YSESHEYLTKDGDTGKVGITAFAAKALGDIVFVDLPEVGDAFEAGESFGS
VESVKAASDVYAPVSGEVLEINEGLTDTPGILNEDPMGKGWFMKIKITGD
VPDTLLDSAAYEALCEESK*
back to top

mRNA from alignment at C-linearis_contig7:2895313..2901292-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14527.1 ID=mRNA_C-linearis_contig7.14527.1|Name=mRNA_C-linearis_contig7.14527.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5980bp|location=Sequence derived from alignment at C-linearis_contig7:2895313..2901292- (Chordaria linearis ClinC8C monoicous)
ATGGCTTCTGTAGCGGTGTCTAGGTTCGGCGGGGCCGTGCGGTCTTCGGG
AGCTGCGATGCGGGCGATGCGCACGATGGCGGGACCTTCCCCTCTCGCAA
GAGCGGGGTGGATTGCGGGCGGGGGTAACAAGCGTTGCATGTCCACCGTG
TACTCGGAGTCGCACGAGTACCTTACCAAGGTATGTGGGGAGGAGGGTTC
GATGGTGTGGGCGTGCGCTCCTGGTCGCGCTGGTTGTGCTTGGTATCCAA
AGCCTGGTGGATCGCAGTCAGGTATTTTCTGTCTCTTTCGCCGAAAAAGC
AAAGTGCAGGTGCTTGCTCTGTGTTACACTACTTCCGCATGAAGTCATGA
AGGCGTGTTGTGCATGATCTTCGATCGCGGGACAACCACGAGAAGGTCGT
GGCAGGCTTACCCCGCCTTGCTCAGTGCCGGTTGATGAAGCAGATCAATC
TCTGGTGTTGAGGCGCACACCCTTTTCCGTGTGCTTTTTATGTCCGCTGT
TGTGTGCGAGAGAAAGCGATGACGTTGTGTGTGTTCAACCTCCCCCGAGT
CTGAGGGCTTTTCAACTTCTCCCTGTGTACAACTAGAGAAGGGTCGGGGA
ACTCACAACGCGTGATTTTGCGTGAGGCTAAACTACTCAGGCAGTGAGTC
GTGCACCTGTGTTCTTTGGCGCTAAGACACACGGATACGGCAGCGTTGCA
GCTTGGTTTTCAGTTCAAGAAGCAAGCACCTTCGCCCCGTGTCTCTCTTG
TTCATGACGAACGCGACTCTCTCGGGGCTAGCTGTGGCAGGACCTTGCTG
CTGCAGCCCCAGTGGCGCGGACGGTTTCTTGTTTCCTCACTACAGCGGTC
TTTTCTGTATCTGCTCTCACGTTTTGTTTCCCCTCCTGCCCCCGGCACCA
AGTACACGCGTGTTTCGTGTTTCGTGTGTTGTGTGCAGGACTGGTTTCGG
AACTTTTAATGTAGAAGTATTTATTTGCTGACCTTCCTCTCTCTGCCCCA
GAAGGGCTGTAAAGAGACAAATGAACGGCGAGCTCTTTCTCTTTCGCGCG
CGCGTTCTGCATGCACAGCAGGAGTACACACCTACATCAACCTTTGTCAA
CCGCGGTCTCCAAACAGATGCTCAAGTGCAGAAACCTCGTTCATACCCAT
GGGGCGGGCCAATGTATATAATAGTATAGTCTATACTCCGGAGTATTTTT
TTACATCACATTCTCTATGTTAACCAGAGCTCACAGCATTTCTGCCTCTG
CCGGATACTTGTAGGAGCTCTATCCCGTGATCACACAGAAGAAGAAGGGT
TCCTCTCCCTAAGGCCCCCAGCCCTCCCCTCCTGCGGTGCTTCGCCTTCG
ATTTTTAACGCGAGAGTGCGGCAATCTCTTCCCTCTGTGTACACAGGACT
AGCGCTCTCCACTTCTCCACAAACCAGGGACGTATTTGAGAGAAAAACTA
CGACTCTGTAGTACTGTTTGTCGTTCAAATAAATACTGCTGCCGGTTCGA
AACCTCATCGTTGGTACCATGGTAGCACGGTTTCCAACCCGCCGCGGCTC
TTATGCGGATCCGGTGGTGCGGCTGCGGGAATCTCCTCTCGCTGCGTTTG
TGCCTTCGAGGAGATGAAAGGTTAGCTGCATGTGTGCATCCGTCGTGTTT
GGTCGGGGGCGGTAAGCTAGTTTCACGCCCTCTTCTCATCAGAGAATATT
GAACATCACGCCCCAAAGCGATGCGATGGGTAACAGATTGTATGGCCCAA
CGATACATGGTTCAGTTTCTGGCAGTCCGTCCTTTCGAAGCGTAGAAAAC
AGGATTGGCACCTGGAATCATTATCCGCTGCCATCCTCGGACATTTTTCG
TGCTCTTTTCCAACCCCATAATTCAACCCCCCCCCTTCGAGGTGTACCCT
GTTGCTGCTTCTCCCCGAGATCATCGATCCCCAGAAACAGAGCACCCCGC
CCCCCCCCGCCGCTTGTCTTCCGAATGCTTGTGCAACGCGGAATCGCATT
CCCCGTATTTGCAGGACGGGGACACGGGCAAGGTGGGCATCACGGCCTTC
GCCGCCAAGGCTCTGGGCGACATCGTTTTCGTAGACCTTCCTGAAGTGGG
CGACGCCTTCGAGGCCGGGTGAGGCAGACATGCACGCAGATGGACAGAAG
GATAACACAACAGTCGAGTGAGGCAGGCGGAAAGGCAGACCTGGTCTGGG
TCTGCCTCCGTTGTGGAAATAGTCGTGGGAGAAACAGAGAAAGTACCTGG
TGGTAAATACTAGAGCCTCGCACGTGTGATGTGAAATACGCTTCAGCAGC
GCGGGTAGGGAAAAAATCTACACCCGCTAGAGCAAGCAAGCAGCCGAGAT
GGGAGGACAAAGTGTCCCGGGACTTCTCAAAAGTCTCTTTATTGGGCGGT
GCCGCAGAAGCGTTTTCTTGCCGCGGGTGTTCGGTGCTACCCATGTCTCG
GTGTTGGCACCGCACAGCAGTTTTGGCCGCGAACGGTTTCACCGAACGAC
AGGGTGATATGTGCCAACGGTCGATTCGCGGGATGGGTGTTCCAAGATAG
AAATGTTTTCGTGAGCGGGGTCCGGGTGTGAGGCGCACGTTCAACTGTTA
GCGCGCACCACACGCGAGAGTGGCTTTACCTTGCCCACGTGTCACTCTCC
TGTCACGCTCTGTTGCGCACCGTACGCTGTTGGCGTGCCCACCTTATCGG
GTTGTCCAGGGTGCGCGCGAAATACGGCAACTCTGCTGTTGCGTCTCGTT
GTATAACACTCTTGTGCCTATCCGTTGTTCTGAGGGTGGGTACCCAGATG
GTTCCCAGCATATTACGGCAGCCTCCGAGGCCCTCCGTCCCTTTGGAGGT
TGGACAACATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCCG
AACAGTGTTGCAGATTCCATTTGTTTTAGTGCCTTGGTCCCGGGATGCTG
CATTGCTTCCCTTTTATCCCTCGGCTCGACCCTTGTTTGGATGGTTTCTG
CTCTACTCTTGTGCCCGGAGTACGTCTGTGCGTTCGCCTGGGATTGCACA
TGTTTGGCCTTTTCGCCTGAACCGCCTGCCTGCGTTTCCTTCGTGCCTCT
TTCGGGCATGCAGTGAATCTTTTGGGTCTGTGGAATCGGTCAAGGCTGCC
AGCGACGTGTACGCCCCGGTCAGCGGGGAGGTGCTGGAGATCAACGAAGT
AAGTCGATACCAACCCTACAGTAGTGACGACGCTGGGGATCACACCTGAC
ACGTCGCCGCCGGTGATACATACCGGTAGAATCGACGGGTGTGGAGTCCA
CCCACTTGATCAGTCGCCATGAAAGATGCCTTCTCGGGCTCTCGCGTTGT
GGCCATGGCGTCGTCGGAAGCGGCGGTAGCCGTAGGAGCGTCGGCGGCCA
TGGTCTCGAGGACGGCCATGAGTGCGCCACCGCTTGTTGTTGCTCGAAGG
TTTTTTGTTTATTGGCGCGCGATCTTCCGATAGAGATAGTTGATTTTTTG
CTGGCTTGGCCTGGTGCCCTGGGTTGGTTTTTGCATGCTCAGTTGTGGTT
TAGGTGGTTTGGCTGTTGTTTGGTGTGCGTGCTTCGTGTTTCTTTTTCAG
GCGTGGCCACCAGCTGAAAACAGCCACGCAACCCAATGGAATGGAGTTAG
CTACAGGCTCGTTTTTAGTTGGGACGCCATAGATGTTCGGCTATCGCCGT
GATGATACCCTTCTTCTCTCTGCTGTTGCCTGTCCAACACCAATGCACCG
CTTCTAGTGTTGGGCAACGAACCAGCAGTTGCGTTGCGGTGGAGGTGGGC
CGTTTTTCGGTGTTACATGGCGTGTCGTGACAGTAGTTGCTGCTGTCATC
TTCGTGCTCCGCGCATATGCTTGCAACGCTCAACGTGTTACATGGCCGCA
TGCACCGATTTGATCGACGAACCGGCCAAATGTCAAACGCGTAGTTACCA
TACAGCCGTGCAACACCATAGCAGCCCGATTTTCCTCACGCCGAGTTTGC
GCACGAGCAATATTACTCCGAGCAACCAGTGTTGGAGGCCCGGTCAGGGC
TTCGGTGGCATTTTTTTACTCTTATGGCCTGTTGAGCACCAACCAGCTGC
TTTGGGGAGAGTATCGTTCACCTTATTGACACCCCATTCCTCCCCCATCC
TGGCGCGCAGGGGTTGACGGACACCCCTGGCATCCTAAACGAGGACCCCA
TGGGCAAGGGCTGGTTCATGAAGATCAAGATCACGGGCGACGTGCCCGAC
ACGCTCTTGGACTCCGCGGCATACGAGGCTCTCTGCGAAGAGTCCAAGTG
AGGCTCTTATGAAGCCTTTCCGCGGAATGGCGGCTTGTATCAAATCGTGG
GGAACGGTAGGATTTTGATGTGAAACGAGACGATCACCCGTTTGGGGGTG
GAGGCACGGTCTGCGCGGGGTGGAACGGAAGCGGAGGAAGGTAGCGGAAT
AGATGCCTAATCTCGTTTCGTGACCTCCGTGTGTAGCGAGCTTGCGCGTC
GTGTTCAGTCCCGCCCCTTGCCGTTGACATGGCACGGTCAAGGGCAAGGG
TTTTGAGACGTTTTGCGCTTGGTCTCGATGGTTTCAGCATAACAGACGAC
GAAAGCGTCAAGTAACGGGCTGAAAATTTGTGACGCGGGAAGTTTTTCTT
ATTGTTTTGCGCTCGACACGTGCGGCGTTCACAAGGCTTTGTTTATCCCG
CCGTGCCCGCACCGTTGGCACGAGCTTCTTCCTTTCTTCCTTGAAAGGGC
GGTCCGAGTGGTTCGCTACCCGTTCAGACCCTGCTCCACAGCAGTAGGCT
GATCGAGTAGAAAGCTGCCACTGCTGTGTTGCATTGTGCGTGCAGAAAAC
ACTGGGAATACACTGGTAAAGGCTGTAGGCTAGCTGCCCACTCAGCTGTG
CCGGTTTGCGTCGGGCTAGCGCTCTGTTTTTTTGGCTTTTTATGGCACGG
GGGCGCCGTATTTCAATTTCAAAACACCTCTCCGTGTGATTGGACTTGCG
TGCATTCGCTGATTATGCTGTTCGTTTCTCTCGTCAGAGGGGAATGCTAT
TGTAATGCTCGGATCTTGTAGCCGTTAGCGATGGGTCGTTGCGTTGTGTT
GGTAAAGTACCAGTAGTTGATAGATCGAACCACGCCATCGTCGAAGTTTG
ATGTACTCGGGGTGCGCGAGGCGAAGCGATGAGAAACTGCCAGCAGGCCG
ATCGCTCGCGCTAGCTCCACAACCGAGATCCGGAATTGCATGGCGGCCAC
GCGTCTGCTGATATTTGTTAATATTCTAAATGAGGGAGGGTGCGTAGGCT
GGGCTGGGTAAAGCGAAGAGGTTTGAGTTTAGTTTTTTTAAGCGCAGCGC
CGAAGAACCTGCTCCTTGTGTTTCGGCTTTGCAACCTTTGGTCGCCTTTA
GTCATCGTGACCACCGGTGTCGCCTGCTCACTGACTCCATGGTATGCGGC
TGTGCAAAAACCGTGTTTTTGGCTCACACGCAACCCGGCTGTGATTGGTG
GATTGGAACCGGTTGCGCTCTCGTGCCAGACGTTGGTCAATAGATCAAAA
CCCTGAACGGGGCAAAATCCTGGTGGCGTGGATACGTGGATATCCTGAGT
AGTCCTCTTTGGAGAGCCAAGTGAGGCGTGCCAAGCCGAGACCGACTCGA
GAAAGTGGCAAACTATCGCGTTGGAGGAAACGTGCCATTACGTGTGAGGT
ACATCCAACTTCCCTGCTTTCCTACAGTAGAGCAAAATGGTTCTTAGAGG
GTGGGAAACGATGCTTCTTCTTCCTCTGTCTGCTAGGATCGAATGTGTTC
CGGCGAATTTAGACTATTTTGGCAACAAAAACAGCAGCATGTAAACGTGT
CTTCGGCACACACTCAGACCGAACTCCTGGCCCGAAACTTTCTTCTTGGC
AGATTTGTGCGCGCGCACCCCTTCACAAAAAAAGTAGAGACAATTTCTTG
AAAGAAAATCAGGCACCAACGCTCGCCCGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig7:2895313..2901292-

>mRNA_C-linearis_contig7.14527.1 ID=mRNA_C-linearis_contig7.14527.1|Name=mRNA_C-linearis_contig7.14527.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at C-linearis_contig7:2895313..2901292- (Chordaria linearis ClinC8C monoicous)
ATGGCTTCTGTAGCGGTGTCTAGGTTCGGCGGGGCCGTGCGGTCTTCGGG
AGCTGCGATGCGGGCGATGCGCACGATGGCGGGACCTTCCCCTCTCGCAA
GAGCGGGGTGGATTGCGGGCGGGGGTAACAAGCGTTGCATGTCCACCGTG
TACTCGGAGTCGCACGAGTACCTTACCAAGATGGCTTCTGTAGCGGTGTC
TAGGTTCGGCGGGGCCGTGCGGTCTTCGGGAGCTGCGATGCGGGCGATGC
GCACGATGGCGGGACCTTCCCCTCTCGCAAGAGCGGGGTGGATTGCGGGC
GGGGGTAACAAGCGTTGCATGTCCACCGTGTACTCGGAGTCGCACGAGTA
CCTTACCAAGGACGGGGACACGGGCAAGGTGGGCATCACGGCCTTCGCCG
CCAAGGCTCTGGGCGACATCGTTTTCGTAGACCTTCCTGAAGTGGGCGAC
GCCTTCGAGGCCGGGACGGGGACACGGGCAAGGTGGGCATCACGGCCTTC
GCCGCCAAGGCTCTGGGCGACATCGTTTTCGTAGACCTTCCTGAAGTGGG
CGACGCCTTCGAGGCCGGTGAATCTTTTGGGTCTGTGGAATCGGTCAAGG
CTGCCAGCGACGTGTACGCCCCGGTCAGCGGGGAGGTGCTGGAGATCAAC
GAATGAATCTTTTGGGTCTGTGGAATCGGTCAAGGCTGCCAGCGACGTGT
ACGCCCCGGTCAGCGGGGAGGTGCTGGAGATCAACGAAGGGTTGACGGAC
ACCCCTGGCATCCTAAACGAGGACCCCATGGGCAAGGGCTGGTTCATGAA
GATCAAGATCACGGGCGACGTGCCCGACACGCTCTTGGACTCCGCGGCAT
ACGAGGCTCTCTGCGAAGAGTCCAAGTGAGGGTTGACGGACACCCCTGGC
ATCCTAAACGAGGACCCCATGGGCAAGGGCTGGTTCATGAAGATCAAGAT
CACGGGCGACGTGCCCGACACGCTCTTGGACTCCGCGGCATACGAGGCTC
TCTGCGAAGAGTCCAAGTGA
back to top