mRNA_C-linearis_contig7.14526.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI) HSP 1 Score: 433 bits (1114), Expect = 2.330e-148 Identity = 221/229 (96.51%), Postives = 226/229 (98.69%), Query Frame = 2
Query: 356 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGG 1042
MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASS+FRRVITGQNMFVTDYVNRGD + KVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTG+GDAFVKASGPLIQREL+EGETLRVSSGSVVAFSTSVQYDVQT+PGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGRGG
Sbjct: 1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRGG 229
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA) HSP 1 Score: 309 bits (791), Expect = 9.970e-101 Identity = 152/259 (58.69%), Postives = 203/259 (78.38%), Query Frame = 2
Query: 308 VADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGM-MPIPLGMGGG 1078
V D + +DF+ AS++EG +SQ+VT LEPGQV+RAE+G +++M DG+EM+T+TGGG + F+R +TGQN+F++DY +GDR V LGTD PSKI+RL L + G+++CQ+GA L SHT+DI+TEFTK + GFFGGEGFVLQ L G+GD FVKA G +I++EL GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P RM+ +IARR+P G G G+ +PIP GMG G
Sbjct: 37 VVSSDGVVATHAIDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGGLGLAIPIP-GMGSG 294
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S4J9C2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9C2_9STRA) HSP 1 Score: 303 bits (775), Expect = 1.600e-97 Identity = 175/340 (51.47%), Postives = 236/340 (69.41%), Query Frame = 2
Query: 89 GATSAARRLTLLRGSSGRLSVSPKHVGHLYPTALSAAR----FAPTATAAFVHRSSSSKPKPSTGSDIATGGSSAP--AVADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGD--RTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLG-MGGG 1078
G+ + ARR L GS+ S H+ L+P L+A+ F P T R P + + +A GG + P A A D + +A P+DFD++SKVEG+ESQ+VT ++PGQ++RAE+G +++M G+ M+T TGGG S+ F+R++TGQN+F++DY G+ T V LGTD PSKI+RL + YGG+++ Q+GA L +HTIDI+ EF K AGFFGGEGFVLQ LTG GD F+KA G LI+REL+ GE LR+SSG +VAFS V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P G G G+ +P+G MGGG
Sbjct: 22 GSANLARRS--LAGSAS----STSHLSVLHPPLLTASAQLGCFDPARTKEPFQRRRYFSSTPDSDTPVAVGGENLPEGAKASSDGV-VAVPIDFDVSSKVEGKESQIVTVAIKPGQILRAESGAMMYMTQGVSMNTTTGGGLSAGFKRMLTGQNVFISDYSYEGEPGTTGLVALGTDFPSKIIRLNVDQYGGKIVAQKGALLCATHTIDIEMEFAKKFSAGFFGGEGFVLQALTGDGDVFLKAGGTLIRRELSAGEQLRISSGCLVAFSDGVDFDIQTMPGFKNVMFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGGIGLA-VPIGGMGGG 353
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA) HSP 1 Score: 300 bits (768), Expect = 1.560e-96 Identity = 153/255 (60.00%), Postives = 197/255 (77.25%), Query Frame = 2
Query: 320 DHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGG 1075
D + P++FD+ASK+EG+ESQ+VT +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R++TGQN+F++DY G+ ++ V LGTD PSKI+RL YGG+++CQ+GA L SHTIDI+ EF K AGFFGGEGFVLQ LTG GD FVKA G +I++EL GE LR+SSG +V FS V +DVQ +PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P G G +PIP GMGG
Sbjct: 98 DGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGIGLAVPIP-GMGG 351
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA) HSP 1 Score: 299 bits (766), Expect = 4.420e-96 Identity = 148/242 (61.16%), Postives = 194/242 (80.17%), Query Frame = 2
Query: 317 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1033
+D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G S V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ +GFFGGEGFVLQRLTG GDAF+KA G LI+REL+EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG+VFLQ +PFDR+V IA R+P G
Sbjct: 17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRG 258
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA) HSP 1 Score: 297 bits (760), Expect = 4.690e-96 Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 2
Query: 338 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
KP++FD A +VEG ++Q+V EL PGQ +RAE+GNL++M +G+EM+T GG SS F R+++G MF++++ G + V LGTDVPSKI+R+ L YGGE+ICQ+GAFLAGS I+I+ FTK GFFGGEGFVLQ+L+G+GDA+VKA+G L+ ++L EGETLRV++GS+VAF S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP RGGGM GMGGG
Sbjct: 65 KPINFDAAGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNFEYTGSGSGTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIP--RGGGMPIFMGGMGGG 310
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO) HSP 1 Score: 296 bits (759), Expect = 5.640e-96 Identity = 159/299 (53.18%), Postives = 209/299 (69.90%), Query Frame = 2
Query: 185 ALSAARFAPTATAAFVHRSSSSKPKPSTGSDIATGGSSAPAVADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
A SAAR P + A + HR+ +S+ T D G +P+DFD+A+K+EG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR++TGQN F++DY G+ +V LGTD PSKI+RL + YGG+++CQ+GA L SHTID+Q EFTK +GFFGGEGF+LQ LTG+GD F+KA G LI+R+L GE LR+SSG +VAF++ + YDVQ V GF NV GGEGLFIT L GPGTV+LQG P RM+ +IARR+P G G G M +G GGG
Sbjct: 11 ASSAARRGPVSIARYPHRTFASQTPTLTSVDGVVG----------------EPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRRMMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKAGGTLIRRDLRAGEELRISSGCLVAFTSQIDYDVQMVKGFANVFAGGEGLFITTLKGPGTVWLQGQPPQRMISEIARRVPAGGGLGFM---VGSGGG 290
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA) HSP 1 Score: 298 bits (764), Expect = 1.700e-95 Identity = 148/242 (61.16%), Postives = 192/242 (79.34%), Query Frame = 2
Query: 317 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1033
+D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G S V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ GFFGGEGFVLQRLTG GDAF+KA G LI+REL+EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG VFLQ +PFDR+V IA R+P G
Sbjct: 74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPRG 315
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A1W0A5V3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5V3_9STRA) HSP 1 Score: 300 bits (767), Expect = 2.830e-95 Identity = 147/248 (59.27%), Postives = 189/248 (76.21%), Query Frame = 2
Query: 338 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
+P+DF A+++EG E+Q+V ++ P Q +R+E+G +++M DGIEMDT+T GG S R++TGQN FVT+Y +G T V +GT VPSKI+ +PL YGG +ICQ+GAFL GSHTI I+ EFTK AGFFGGEGFVLQRL G GDAF+ A+G LI+R L EGE R+SSG +VAF SV +D+ +V G KNV+F G GLF+T LTGPG V+LQGLPFDRMV +IA RIPGGRGG + +P+G+GGG
Sbjct: 100 EPIDFKKAARIEGTETQIVHIDIGPNQKLRSESGAMIYMTDGIEMDTHTAGGISQGLTRMMTGQNFFVTEYTYKGTDTGTVAMGTSVPSKILHMPLEKYGGSLICQKGAFLCGSHTISIEMEFTKNFGAGFFGGEGFVLQRLNGPGDAFISANGALIERTLKEGEVFRISSGCLVAFEPSVHFDITSVSGVKNVLFSGTGLFVTTLTGPGRVYLQGLPFDRMVGEIASRIPGGRGGSPIIMPMGLGGG 347
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: B8C800_THAPS (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C800_THAPS) HSP 1 Score: 295 bits (756), Expect = 4.690e-95 Identity = 154/250 (61.60%), Postives = 192/250 (76.80%), Query Frame = 2
Query: 341 PLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRT--SKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGM-MPIPLGMGGG 1078
P+DFD+AS +EG+ESQ+VT LEP QV+RAE+G +++M G+ M+T TGGG S+ F+R +TGQN+F++DY G V LG+D PSKIVRL L YGG+VICQ+GA L SHT+DIQ EFTK + GFFGGEGFVLQ LTG GD VKA G LI+++L EGE+LRVSSG +V F V+YDV VPGFKNV+FGGEGLF+T L GPGTV+LQG+P RM+ +IARR+P G G G+ +PIP GMGGG
Sbjct: 74 PIDFDIASSIEGKESQIVTIRLEPNQVLRAESGAMMYMTSGVSMNTTTGGGMSAGFQRFLTGQNVFISDYTYDGSNGPFGFVALGSDFPSKIVRLSLDEYGGKVICQKGALLCASHTVDIQVEFTKKFSTGFFGGEGFVLQGLTGTGDVLVKAGGTLIRKDLKEGESLRVSSGCLVGFQQGVEYDVAMVPGFKNVLFGGEGLFLTTLKGPGTVWLQGMPPQRMISEIARRVPSGGGIGLAVPIP-GMGGG 322 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14526.1 >prot_C-linearis_contig7.14526.1 ID=prot_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=334bp MTSRGATSAARRLTLLRGSSGRLSVSPKHVGHLYPTALSAARFAPTATAAback to top mRNA from alignment at C-linearis_contig7:2887400..2891684+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig7.14526.1 ID=mRNA_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4285bp|location=Sequence derived from alignment at C-linearis_contig7:2887400..2891684+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig7:2887400..2891684+ >mRNA_C-linearis_contig7.14526.1 ID=mRNA_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at C-linearis_contig7:2887400..2891684+ (Chordaria linearis ClinC8C monoicous)back to top |