mRNA_C-linearis_contig7.14526.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14526.1
Unique NamemRNA_C-linearis_contig7.14526.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 2.330e-148
Identity = 221/229 (96.51%), Postives = 226/229 (98.69%), Query Frame = 2
Query:  356 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGG 1042
            MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASS+FRRVITGQNMFVTDYVNRGD + KVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTG+GDAFVKASGPLIQREL+EGETLRVSSGSVVAFSTSVQYDVQT+PGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGRGG
Sbjct:    1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRGG 229          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA)

HSP 1 Score: 309 bits (791), Expect = 9.970e-101
Identity = 152/259 (58.69%), Postives = 203/259 (78.38%), Query Frame = 2
Query:  308 VADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGM-MPIPLGMGGG 1078
            V   D +     +DF+ AS++EG +SQ+VT  LEPGQV+RAE+G +++M DG+EM+T+TGGG  + F+R +TGQN+F++DY  +GDR   V LGTD PSKI+RL L  + G+++CQ+GA L  SHT+DI+TEFTK  + GFFGGEGFVLQ L G+GD FVKA G +I++EL  GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P  RM+ +IARR+P G G G+ +PIP GMG G
Sbjct:   37 VVSSDGVVATHAIDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGGLGLAIPIP-GMGSG 294          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S4J9C2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9C2_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.600e-97
Identity = 175/340 (51.47%), Postives = 236/340 (69.41%), Query Frame = 2
Query:   89 GATSAARRLTLLRGSSGRLSVSPKHVGHLYPTALSAAR----FAPTATAAFVHRSSSSKPKPSTGSDIATGGSSAP--AVADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGD--RTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLG-MGGG 1078
            G+ + ARR   L GS+     S  H+  L+P  L+A+     F P  T     R       P + + +A GG + P  A A  D + +A P+DFD++SKVEG+ESQ+VT  ++PGQ++RAE+G +++M  G+ M+T TGGG S+ F+R++TGQN+F++DY   G+   T  V LGTD PSKI+RL +  YGG+++ Q+GA L  +HTIDI+ EF K   AGFFGGEGFVLQ LTG GD F+KA G LI+REL+ GE LR+SSG +VAFS  V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RM+ +IARR+P G G G+  +P+G MGGG
Sbjct:   22 GSANLARRS--LAGSAS----STSHLSVLHPPLLTASAQLGCFDPARTKEPFQRRRYFSSTPDSDTPVAVGGENLPEGAKASSDGV-VAVPIDFDVSSKVEGKESQIVTVAIKPGQILRAESGAMMYMTQGVSMNTTTGGGLSAGFKRMLTGQNVFISDYSYEGEPGTTGLVALGTDFPSKIIRLNVDQYGGKIVAQKGALLCATHTIDIEMEFAKKFSAGFFGGEGFVLQALTGDGDVFLKAGGTLIRRELSAGEQLRISSGCLVAFSDGVDFDIQTMPGFKNVMFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGGIGLA-VPIGGMGGG 353          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA)

HSP 1 Score: 300 bits (768), Expect = 1.560e-96
Identity = 153/255 (60.00%), Postives = 197/255 (77.25%), Query Frame = 2
Query:  320 DHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGG 1075
            D +    P++FD+ASK+EG+ESQ+VT  +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R++TGQN+F++DY   G+  ++  V LGTD PSKI+RL    YGG+++CQ+GA L  SHTIDI+ EF K   AGFFGGEGFVLQ LTG GD FVKA G +I++EL  GE LR+SSG +V FS  V +DVQ +PGFKNV+FGGEGLF+T LTGPGTV+LQG P  RM+ +IARR+P G  G  +PIP GMGG
Sbjct:   98 DGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGIGLAVPIP-GMGG 351          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA)

HSP 1 Score: 299 bits (766), Expect = 4.420e-96
Identity = 148/242 (61.16%), Postives = 194/242 (80.17%), Query Frame = 2
Query:  317 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1033
            +D  ALAKP+DFD+AS+VEG E+Q+V  +LEPGQV+RAE G+L++M DG+E++T+ GGG S+  +R +TG+NMF++D+   G   S   V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H   ++ EFT+   +GFFGGEGFVLQRLTG GDAF+KA G LI+REL+EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG+VFLQ +PFDR+V  IA R+P G
Sbjct:   17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRG 258          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA)

HSP 1 Score: 297 bits (760), Expect = 4.690e-96
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 2
Query:  338 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
            KP++FD A +VEG ++Q+V  EL PGQ +RAE+GNL++M +G+EM+T   GG SS F R+++G  MF++++   G  +  V LGTDVPSKI+R+ L  YGGE+ICQ+GAFLAGS  I+I+  FTK    GFFGGEGFVLQ+L+G+GDA+VKA+G L+ ++L EGETLRV++GS+VAF  S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP  RGGGM     GMGGG
Sbjct:   65 KPINFDAAGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNFEYTGSGSGTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIP--RGGGMPIFMGGMGGG 310          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO)

HSP 1 Score: 296 bits (759), Expect = 5.640e-96
Identity = 159/299 (53.18%), Postives = 209/299 (69.90%), Query Frame = 2
Query:  185 ALSAARFAPTATAAFVHRSSSSKPKPSTGSDIATGGSSAPAVADQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
            A SAAR  P + A + HR+ +S+    T  D   G                +P+DFD+A+K+EG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR++TGQN F++DY   G+   +V LGTD PSKI+RL +  YGG+++CQ+GA L  SHTID+Q EFTK   +GFFGGEGF+LQ LTG+GD F+KA G LI+R+L  GE LR+SSG +VAF++ + YDVQ V GF NV  GGEGLFIT L GPGTV+LQG P  RM+ +IARR+P G G G M   +G GGG
Sbjct:   11 ASSAARRGPVSIARYPHRTFASQTPTLTSVDGVVG----------------EPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRRMMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKAGGTLIRRDLRAGEELRISSGCLVAFTSQIDYDVQMVKGFANVFAGGEGLFITTLKGPGTVWLQGQPPQRMISEIARRVPAGGGLGFM---VGSGGG 290          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.700e-95
Identity = 148/242 (61.16%), Postives = 192/242 (79.34%), Query Frame = 2
Query:  317 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSK--VGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1033
            +D  ALAKP+DFD+AS+VEG E+Q+V  +LEPGQV+RAE G+L++M DG+E++T+ GGG S+  +R +TG+NMF++D+   G   S   V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H   ++ EFT+    GFFGGEGFVLQRLTG GDAF+KA G LI+REL+EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG VFLQ +PFDR+V  IA R+P G
Sbjct:   74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPRG 315          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: A0A1W0A5V3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5V3_9STRA)

HSP 1 Score: 300 bits (767), Expect = 2.830e-95
Identity = 147/248 (59.27%), Postives = 189/248 (76.21%), Query Frame = 2
Query:  338 KPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG 1078
            +P+DF  A+++EG E+Q+V  ++ P Q +R+E+G +++M DGIEMDT+T GG S    R++TGQN FVT+Y  +G  T  V +GT VPSKI+ +PL  YGG +ICQ+GAFL GSHTI I+ EFTK   AGFFGGEGFVLQRL G GDAF+ A+G LI+R L EGE  R+SSG +VAF  SV +D+ +V G KNV+F G GLF+T LTGPG V+LQGLPFDRMV +IA RIPGGRGG  + +P+G+GGG
Sbjct:  100 EPIDFKKAARIEGTETQIVHIDIGPNQKLRSESGAMIYMTDGIEMDTHTAGGISQGLTRMMTGQNFFVTEYTYKGTDTGTVAMGTSVPSKILHMPLEKYGGSLICQKGAFLCGSHTISIEMEFTKNFGAGFFGGEGFVLQRLNGPGDAFISANGALIERTLKEGEVFRISSGCLVAFEPSVHFDITSVSGVKNVLFSGTGLFVTTLTGPGRVYLQGLPFDRMVGEIASRIPGGRGGSPIIMPMGLGGG 347          
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Match: B8C800_THAPS (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C800_THAPS)

HSP 1 Score: 295 bits (756), Expect = 4.690e-95
Identity = 154/250 (61.60%), Postives = 192/250 (76.80%), Query Frame = 2
Query:  341 PLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITGQNMFVTDYVNRGDRT--SKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEGETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGRGGGM-MPIPLGMGGG 1078
            P+DFD+AS +EG+ESQ+VT  LEP QV+RAE+G +++M  G+ M+T TGGG S+ F+R +TGQN+F++DY   G       V LG+D PSKIVRL L  YGG+VICQ+GA L  SHT+DIQ EFTK  + GFFGGEGFVLQ LTG GD  VKA G LI+++L EGE+LRVSSG +V F   V+YDV  VPGFKNV+FGGEGLF+T L GPGTV+LQG+P  RM+ +IARR+P G G G+ +PIP GMGGG
Sbjct:   74 PIDFDIASSIEGKESQIVTIRLEPNQVLRAESGAMMYMTSGVSMNTTTGGGMSAGFQRFLTGQNVFISDYTYDGSNGPFGFVALGSDFPSKIVRLSLDEYGGKVICQKGALLCASHTVDIQVEFTKKFSTGFFGGEGFVLQGLTGTGDVLVKAGGTLIRKDLKEGESLRVSSGCLVGFQQGVEYDVAMVPGFKNVLFGGEGLFLTTLKGPGTVWLQGMPPQRMISEIARRVPSGGGIGLAVPIP-GMGGG 322          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U0_ECTSI2.330e-14896.51Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2WLF3_9STRA9.970e-10158.69Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4J9C2_9STRA1.600e-9751.47Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S4QQY9_9STRA1.560e-9660.00Altered inheritance of mitochondria protein 24, mi... [more]
A0A4D9D418_9STRA4.420e-9661.16Altered inheritance of mitochondria protein 24, mi... [more]
A0A7S2GIV3_9STRA4.690e-9661.69Altered inheritance of mitochondria protein 24, mi... [more]
A0A1Z5KFL0_FISSO5.640e-9653.18Altered inheritance of mitochondria protein 24, mi... [more]
W7T4F9_9STRA1.700e-9561.16Altered inheritance of mitochondria protein 24, mi... [more]
A0A1W0A5V3_9STRA2.830e-9559.27Altered inheritance of mitochondria protein 24, mi... [more]
B8C800_THAPS4.690e-9561.60Altered inheritance of mitochondria protein 24, mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2887400..2891684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score438.0
Seed ortholog evalue4.1e-120
Seed eggNOG ortholog2880.D7G1U0
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Mitochondrial biogenesis AIM24
EggNOG OGs2QVFQ@2759,COG2013@1
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_004160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1078
Cds size1002
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14526.1prot_C-linearis_contig7.14526.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2887476..2891684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930315.9873817-UTR-C-linearis_contig7:2887399..28874751622930315.9873817-UTR-C-linearis_contig7:2887399..2887475Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2887400..2887475 +
1690881008.370407-UTR-C-linearis_contig7:2887399..28874751690881008.370407-UTR-C-linearis_contig7:2887399..2887475Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2887400..2887475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930316.0077813-CDS-C-linearis_contig7:2887475..28878261622930316.0077813-CDS-C-linearis_contig7:2887475..2887826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2887476..2887826 +
1690881008.3890545-CDS-C-linearis_contig7:2887475..28878261690881008.3890545-CDS-C-linearis_contig7:2887475..2887826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2887476..2887826 +
1622930316.0260086-CDS-C-linearis_contig7:2888207..28882931622930316.0260086-CDS-C-linearis_contig7:2888207..2888293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2888208..2888293 +
1690881008.3999739-CDS-C-linearis_contig7:2888207..28882931690881008.3999739-CDS-C-linearis_contig7:2888207..2888293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2888208..2888293 +
1622930316.0441098-CDS-C-linearis_contig7:2888839..28889291622930316.0441098-CDS-C-linearis_contig7:2888839..2888929Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2888840..2888929 +
1690881008.4099834-CDS-C-linearis_contig7:2888839..28889291690881008.4099834-CDS-C-linearis_contig7:2888839..2888929Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2888840..2888929 +
1622930316.059666-CDS-C-linearis_contig7:2889573..28896671622930316.059666-CDS-C-linearis_contig7:2889573..2889667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2889574..2889667 +
1690881008.4223468-CDS-C-linearis_contig7:2889573..28896671690881008.4223468-CDS-C-linearis_contig7:2889573..2889667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2889574..2889667 +
1622930316.0813735-CDS-C-linearis_contig7:2890218..28903131622930316.0813735-CDS-C-linearis_contig7:2890218..2890313Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2890219..2890313 +
1690881008.436206-CDS-C-linearis_contig7:2890218..28903131690881008.436206-CDS-C-linearis_contig7:2890218..2890313Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2890219..2890313 +
1622930316.1197402-CDS-C-linearis_contig7:2890872..28910371622930316.1197402-CDS-C-linearis_contig7:2890872..2891037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2890873..2891037 +
1690881008.453056-CDS-C-linearis_contig7:2890872..28910371690881008.453056-CDS-C-linearis_contig7:2890872..2891037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2890873..2891037 +
1622930316.13402-CDS-C-linearis_contig7:2891563..28916841622930316.13402-CDS-C-linearis_contig7:2891563..2891684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2891564..2891684 +
1690881008.4637504-CDS-C-linearis_contig7:2891563..28916841690881008.4637504-CDS-C-linearis_contig7:2891563..2891684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2891564..2891684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14526.1

>prot_C-linearis_contig7.14526.1 ID=prot_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=334bp
MTSRGATSAARRLTLLRGSSGRLSVSPKHVGHLYPTALSAARFAPTATAA
FVHRSSSSKPKPSTGSDIATGGSSAPAVADQDHLALAKPLDFDMASKVEG
QESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSVFRRVITG
QNMFVTDYVNRGDRTSKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAG
SHTIDIQTEFTKMMAGFFGGEGFVLQRLTGQGDAFVKASGPLIQRELTEG
ETLRVSSGSVVAFSTSVQYDVQTVPGFKNVVFGGEGLFITKLTGPGTVFL
QGLPFDRMVDQIARRIPGGRGGGMMPIPLGMGGG
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mRNA from alignment at C-linearis_contig7:2887400..2891684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14526.1 ID=mRNA_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4285bp|location=Sequence derived from alignment at C-linearis_contig7:2887400..2891684+ (Chordaria linearis ClinC8C monoicous)
CCTACATAGAAACTTGCTCGAGACTACGCCACACAAACTCCTGACGCACC GAGAGGAGAGATAACAGAAAATAATCATGACGAGCCGAGGGGCGACCTCG GCAGCTAGGCGGCTGACTCTTTTACGCGGAAGCAGCGGCAGACTCTCGGT GTCGCCCAAGCATGTCGGACATCTCTATCCCACCGCATTATCTGCTGCGC GTTTTGCACCGACTGCAACAGCAGCATTCGTCCACAGAAGCAGCAGCAGT AAGCCCAAGCCCAGCACCGGCTCTGACATTGCGACCGGCGGCTCGAGTGC TCCAGCTGTGGCGGATCAGGACCACCTCGCCCTCGCCAAGCCCCTCGACT TTGACATGGCCTCGAAGGTGGAAGGGCAGGAATCTCAGATGGTCACCTTT GAGCTGGAGCCTGGACAGGTCATCAGGGTGAGTCAAACGAGCGGCACCTG AATCTCCTCAGGTTCACAATGGACCATACCATATTGTTTTGTTTTGGCCA TGACCATGCTTTGCTTATGCCGGACTGAGGCTTGTACTACGAAGTGTTTA TTTCCTGCCATCATCTCCATCTTTTGAACCTCGCACATCTTGGACACGAG AAGATGGCAGCGTAGCCTGAGTACGTACATCGTGGAGTTGTGATGCCCCG CTCTTACAGAAAACAAGCAAGCGCCACATACATGTTAGGGCACTCAGTTT CCAACGATCGGCCGGCGTGGCGAATCACTTACATCACCCCGAAGATGCAA CCATAAAGTAGCCTGTCCCGTGTTTCCAACCCTAGACTATTTCGGTTTAC GCCGCCAGGCGGAAGCCGGCAACCTGGTGTTCATGGAGGACGGCATCGAG ATGGACACGAACACCGGTGGCGGTGCAAGCAGCGTGTTCCGGAGGTGAGT GATGGCAGCGGTGTCAAGTGCCTGTGAGCTTTGGGGCCGCCGGCCTGGAC GCCGGGCGAACCTCTGTTGTGCTTGGCCGCCGCTGAGAAAGGAAGGGTGC GCTCAGAGAAAACGAGACGCATGACGTCTTCGACAGCACCTTCTACGAGG ACTCTGCGCAGTCTAGCTGATTCTTTGTGCATTTTAAAGCAGTGTTGCGC CGTGTTTGCCAGCTCCCCTCCCTGCCCCCACCTCATGAATGAGCAAGGCT TTGGTTCATGTGGAGTTAGTCCCACACACGATGAACAGGGCAAGGATTAA AATCAGTCCTCTCGGCACTCAACCAACACGCCCGCGAACCCCGCCCCAAA GCCGCGCACCCGGCCAGCCTGTCGGCTGATGAGCGCCCAGGCAAGCTTTC CAGAAACCGAACCAATCAGCAGCAAGCCTGGCCGCCGTCACCCTGAACCC ACCCCAACCCCCCACCTTTGTTGTCGTTCCAATGCTACGTACGTATTGCT ATTGTTCTTGGTTGTTGCCCGCCCGCCGCCCTCTCGAAAGAGTCATCACG GGGCAGAACATGTTCGTGACGGACTACGTGAACCGTGGCGACAGAACCAG CAAGGTCGGCCTGGGTACCGACGTTCCCAGGTGTGTGTCCCCCGGTGTTG GTGCCAGGGGCGCATCTGCAATTTTCTTGTACCTATTTATCCGGACTCGC GCCTCTTCGATGATTGCGCTATTAAGGATCCCCCCCGTGTGCGCTAAAGA GCGTCCGTCGCCTTTCCTTCACCTTGGAAAATCCAACAAATCCAACAAGA CTAAGAGTTATTTTTCATCTAGTTTTTCTCTGTCTGTCTCTCTGTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGACTAAGAGTTCTTTTTC ATCTAGTTTTTCTCTGTCTGTCTCTCTCTCTCTCTGTCTCTGTCTCTCTC TCTGTCTGTCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTC TCTCTCTGCCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTC TCTCGGTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTGTCTCTCTGTCTC TCTGTCTCTGTGTGTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTGCCTC TCTCTCTCTCTGCCTCTCTGCCTCTCTGTCTGTCTGTCTGTCTGTCTGTC TCTCTCTCTCTCTCCTCGCTAACGCTCTCTTCCGTCGTTTTGTTCGTCGC GGTCGCACACCACGCCTCTCGCAGCAAGATCGTCCGCCTACCTCTGGCGG CGTACGGGGGAGAGGTGATATGCCAGAGGGGAGCCTTCCTCGCCGGGAGC CACACCATCGACATACAGGTACCCAACTCGGCAGTGTCGTAGCCTGGAGC AAGCGCAGGGGTGGGGCTATGCAGCTGCGCCCCAGGTGCGTCGCTTTTGA GTCCGAGAAAATTCGATGAAAGGCTAGAGGCATTGTCGGTTGATGCCTTT CGGCTGGGGGGTTGAGGTCTTATTTCTTTTGATGAGTTGACTCTGTGGCG CTGAGTGAGACATAACCAGCTCGACCTCGGTGGTATTGGGCCTCTTGATG ATTAGTTTGCGGGCGTCGCTGACTCTTGTTTGCTTAGCCTCTTCACTTGC TCCGTAATTCTCCGCGCCCTTGGCTGGGGTTTTCTGCGTGATTTTTTTCT CCTTGTTGGCCCTCAACAATTGGTTCTGTCTGTCCTTGTGTCGCGTTCGC GTGTCCTGGCTATCTAGAAAAAGACAACCATAATCCTTGGTATGACATGT GCTTAAATTTAGCCATCGATGTGCTTCTCCTACAAATTCGGTTCTCTTCG CTGGTTGGCCTCGTCTCCCCTTGTGCACTCTTTTTTGCTTGTGGCTTAAA ATACTAAACACGGCTTCAGACGGAGTTCACGAAGATGATGGCGGGATTCT TCGGCGGGGAAGGGTTCGTGCTTCAGCGCCTCACCGGGCAGGGCGACGCG TTCGTTAAGGCTAGGTGCGGCTGATACGTTGGCTGTAGTTTTGATCTACT TTTGTGTCTTATCTCTAGATTTGAGTTGCGCTCTTTCGATGTGTGCAGTG CAGGTGGTGATAGATGTAGGGGAGGCAGGAGTCGACGAGCGCCTTTTGAC GCGCCACGTGTAGGAAGACAGCTGGCATGGTGTTTGGGGAGATGCGGCTA GGACCCCAGCGATCGGTCGGTGTGAGTAAGCTCCAAGCTCTCTTGCTGTG ATGATTGCCCGACAGCCAAGAGGAGTGTGCAGCAGTGCTCCAGGATTCCC AAAACCATTAGACTGCATGAGTGCTCTGCAGATACCTTACAGCACGCCAG GCTCTTTCACTCCACCCTAAATAGTCATCGCCGTCCCAGACACCCCCCGT CCCAGCTCCGTTCGAAAGTTTGACCCCCCTTTCCTCCCTCCCTCTCCTCC CCATCGGAAACCAACCCCCCCGCCGCGCCTCCTCTCCGAATCCCGTTTGC GTTCGGGGCTGGCTCGCCATCTACCTACCACAACCTAACCCCACACATAT ATGTACAAAATGAACACAACCAGTGGTCCCCTTATCCAGCGAGAGCTGAC GGAGGGGGAGACTCTTCGCGTGAGCTCGGGGAGCGTGGTGGCGTTCTCGA CATCGGTGCAGTACGACGTGCAGACGGTGCCGGGCTTCAAGAACGTCGTG TTCGGCGGGGAGGGGCTGTTCATCACGAAGCTGACGGGGTAATTGGAGTG ATGGGAAGGAGTTTGGAGGAGTTAGGGGGGTTGCCGGGGTAAAGCACGCC CCCCTGTGATGTTTGTACATGTGCTTCGAAGTATGTAGCGCCCGCTTCGC GCGTCGTGCATGTGCGTAGAAGTAATTTACTTCTATCTTTTATCTATGTA CGCTCTTCTTGTACAAGTAAGCGTCCCGGATGAAAGGTGGTGGTTTGGTT TGGTTTGGTTTGTGTCGTCGGGGTCTTTGGCGGGGAAGAGGGTTCAGGTG CTTCGTCGGCTACGGTTACGGCCGTGAACGAGGGAGGCGGCAAAGGTGTC CACACCGTCCTTCTTCCACCCTATCATGCACAACGATGACAGCTTTACAA ACCGCCGCGTTCTTCTCGCCAGACGCCTTCCCTCCGGGCCCACCCGTCCC CACATTCAACCACAGCAGTCCCTACTCCCGCCCGGTACCACACTTCACCC ACACGACCGTTGATCTCAACCCCCCCCCTCCCGTCCCGCCACACGCCGGC ACACTCTTCGACAGTCCCGGCACGGTGTTCCTGCAAGGGTTGCCGTTCGA CCGCATGGTGGATCAGATCGCGAGACGTATTCCGGGCGGCCGGGGCGGCG GCATGATGCCGATACCCTTGGGGATGGGCGGCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig7:2887400..2891684+

>mRNA_C-linearis_contig7.14526.1 ID=mRNA_C-linearis_contig7.14526.1|Name=mRNA_C-linearis_contig7.14526.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at C-linearis_contig7:2887400..2891684+ (Chordaria linearis ClinC8C monoicous)
ATGACGAGCCGAGGGGCGACCTCGGCAGCTAGGCGGCTGACTCTTTTACG
CGGAAGCAGCGGCAGACTCTCGGTGTCGCCCAAGCATGTCGGACATCTCT
ATCCCACCGCATTATCTGCTGCGCGTTTTGCACCGACTGCAACAGCAGCA
TTCGTCCACAGAAGCAGCAGCAGTAAGCCCAAGCCCAGCACCGGCTCTGA
CATTGCGACCGGCGGCTCGAGTGCTCCAGCTGTGGCGGATCAGGACCACC
TCGCCCTCGCCAAGCCCCTCGACTTTGACATGGCCTCGAAGGTGGAAGGG
CAGGAATCTCAGATGGTCACCTTTGAGCTGGAGCCTGGACAGGTCATCAG
GATGACGAGCCGAGGGGCGACCTCGGCAGCTAGGCGGCTGACTCTTTTAC
GCGGAAGCAGCGGCAGACTCTCGGTGTCGCCCAAGCATGTCGGACATCTC
TATCCCACCGCATTATCTGCTGCGCGTTTTGCACCGACTGCAACAGCAGC
ATTCGTCCACAGAAGCAGCAGCAGTAAGCCCAAGCCCAGCACCGGCTCTG
ACATTGCGACCGGCGGCTCGAGTGCTCCAGCTGTGGCGGATCAGGACCAC
CTCGCCCTCGCCAAGCCCCTCGACTTTGACATGGCCTCGAAGGTGGAAGG
GCAGGAATCTCAGATGGTCACCTTTGAGCTGGAGCCTGGACAGGTCATCA
GGGCGGAAGCCGGCAACCTGGTGTTCATGGAGGACGGCATCGAGATGGAC
ACGAACACCGGTGGCGGTGCAAGCAGCGTGTTCCGGAGGCGGAAGCCGGC
AACCTGGTGTTCATGGAGGACGGCATCGAGATGGACACGAACACCGGTGG
CGGTGCAAGCAGCGTGTTCCGGAGAGTCATCACGGGGCAGAACATGTTCG
TGACGGACTACGTGAACCGTGGCGACAGAACCAGCAAGGTCGGCCTGGGT
ACCGACGTTCCCAGAGTCATCACGGGGCAGAACATGTTCGTGACGGACTA
CGTGAACCGTGGCGACAGAACCAGCAAGGTCGGCCTGGGTACCGACGTTC
CCAGCAAGATCGTCCGCCTACCTCTGGCGGCGTACGGGGGAGAGGTGATA
TGCCAGAGGGGAGCCTTCCTCGCCGGGAGCCACACCATCGACATACAGCA
AGATCGTCCGCCTACCTCTGGCGGCGTACGGGGGAGAGGTGATATGCCAG
AGGGGAGCCTTCCTCGCCGGGAGCCACACCATCGACATACAGACGGAGTT
CACGAAGATGATGGCGGGATTCTTCGGCGGGGAAGGGTTCGTGCTTCAGC
GCCTCACCGGGCAGGGCGACGCGTTCGTTAAGGCTAGACGGAGTTCACGA
AGATGATGGCGGGATTCTTCGGCGGGGAAGGGTTCGTGCTTCAGCGCCTC
ACCGGGCAGGGCGACGCGTTCGTTAAGGCTAGTGGTCCCCTTATCCAGCG
AGAGCTGACGGAGGGGGAGACTCTTCGCGTGAGCTCGGGGAGCGTGGTGG
CGTTCTCGACATCGGTGCAGTACGACGTGCAGACGGTGCCGGGCTTCAAG
AACGTCGTGTTCGGCGGGGAGGGGCTGTTCATCACGAAGCTGACGGGTGG
TCCCCTTATCCAGCGAGAGCTGACGGAGGGGGAGACTCTTCGCGTGAGCT
CGGGGAGCGTGGTGGCGTTCTCGACATCGGTGCAGTACGACGTGCAGACG
GTGCCGGGCTTCAAGAACGTCGTGTTCGGCGGGGAGGGGCTGTTCATCAC
GAAGCTGACGGGTCCCGGCACGGTGTTCCTGCAAGGGTTGCCGTTCGACC
GCATGGTGGATCAGATCGCGAGACGTATTCCGGGCGGCCGGGGCGGCGGC
ATGATGCCGATACCCTTGGGGATGGGCGGCGGGTCCCGGCACGGTGTTCC
TGCAAGGGTTGCCGTTCGACCGCATGGTGGATCAGATCGCGAGACGTATT
CCGGGCGGCCGGGGCGGCGGCATGATGCCGATACCCTTGGGGATGGGCGG
CGGG
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