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Homology
BLAST of mRNA_C-linearis_contig7.14495.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI) HSP 1 Score: 241 bits (615), Expect = 2.720e-69 Identity = 162/279 (58.06%), Postives = 185/279 (66.31%), Query Frame = 1
Query: 4 GNPTTADSPRERDGAGAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKASSTAPPMTEQFSFVARTSVEMLVLRRKHFNIIEIPMLEILKANHAARLQWRARRKQEAHRGRAVLRAAKRALGRAAVRARSFGEDPTLQPHHAQQPHQAN---ASSATGSLPQEGRLHPSGDSSDAVALLAQRERGRQAPSAVNIAGRPPLSRGGPIADNNKYLHRGGREPATAYTGVAAVSHEPRAGGDWEGGXXXXXXXXXXXDVSLAGLSLASGDSMQYSVDSG 831
G P D PRE DGA AEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSK+S+ APP+TEQF VARTSVEMLVLRR+HFNII +PMLEI+KANHAARLQWRA+RKQ+AHRGRAVLRAAKRALG+AA R EDP Q Q + + A+SA G+ Q R D +LLAQR+ R + + + +G L RG P + + H G A G VS AG + GG D SLAGLS+ASGDSMQYSVDSG
Sbjct: 103 GKPEKPDIPREGDGA-AEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAAPPVTEQFCLVARTSVEMLVLRRQHFNIIAMPMLEIIKANHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARV-GGEEDPIFQSCQKQLVNSQSRTAATSAAGNSSQGARPSAPADEGRNTSLLAQRQE-RGSVTKSHSSGWSTLPRGEPSFAKHHH-HPPGDLGANDLAGTV-VSMTWGAGRNPMGGEEEHQDGGGD-DKSLAGLSVASGDSMQYSVDSG 375
BLAST of mRNA_C-linearis_contig7.14495.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.250e-12 Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 52 AEFVYKTARRVLTVLESGEYFGESGVLTYFNGGS-------------------KASSTAPPMTEQFSFVARTSVEMLVLRRKHFNIIEIPMLEILKANHAARLQWRARRKQEAHRGRAVLRA 360
A + RRVL +LE+GE+ GESG+L + G P+TE FS VART+V+ LVLR +H+ II+ LE++++ HA R WR RK+EAHR R V+RA
Sbjct: 1090 AMHAVRGRRRVLAILEAGEHLGESGLLQAASVGGWGXXXXXXXXXXXXXXXXXXXXGKREPITESFSVVARTTVQALVLRARHYAIIDANTLELVRSAHAVRALWRRARKKEAHRARGVVRA 1211
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1709 |
| Cds size | 1305 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930310.2699807-UTR-C-linearis_contig7:2624816..2625043 | 1622930310.2699807-UTR-C-linearis_contig7:2624816..2625043 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2624817..2625043 - |
| 1690881005.4354415-UTR-C-linearis_contig7:2624816..2625043 | 1690881005.4354415-UTR-C-linearis_contig7:2624816..2625043 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2624817..2625043 - |
| 1622930310.381951-UTR-C-linearis_contig7:2627869..2627977 | 1622930310.381951-UTR-C-linearis_contig7:2627869..2627977 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2627870..2627977 - |
| 1690881005.5043762-UTR-C-linearis_contig7:2627869..2627977 | 1690881005.5043762-UTR-C-linearis_contig7:2627869..2627977 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2627870..2627977 - |
| 1622930310.3981414-UTR-C-linearis_contig7:2628213..2628282 | 1622930310.3981414-UTR-C-linearis_contig7:2628213..2628282 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2628214..2628282 - |
| 1690881005.5195441-UTR-C-linearis_contig7:2628213..2628282 | 1690881005.5195441-UTR-C-linearis_contig7:2628213..2628282 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig7 2628214..2628282 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930310.287893-CDS-C-linearis_contig7:2625043..2625408 | 1622930310.287893-CDS-C-linearis_contig7:2625043..2625408 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2625044..2625408 - |
| 1690881005.445788-CDS-C-linearis_contig7:2625043..2625408 | 1690881005.445788-CDS-C-linearis_contig7:2625043..2625408 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2625044..2625408 - |
| 1622930310.3177214-CDS-C-linearis_contig7:2625921..2626208 | 1622930310.3177214-CDS-C-linearis_contig7:2625921..2626208 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2625922..2626208 - |
| 1690881005.4564273-CDS-C-linearis_contig7:2625921..2626208 | 1690881005.4564273-CDS-C-linearis_contig7:2625921..2626208 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2625922..2626208 - |
| 1622930310.3384285-CDS-C-linearis_contig7:2626516..2626950 | 1622930310.3384285-CDS-C-linearis_contig7:2626516..2626950 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2626517..2626950 - |
| 1690881005.467516-CDS-C-linearis_contig7:2626516..2626950 | 1690881005.467516-CDS-C-linearis_contig7:2626516..2626950 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2626517..2626950 - |
| 1622930310.3540897-CDS-C-linearis_contig7:2627335..2627467 | 1622930310.3540897-CDS-C-linearis_contig7:2627335..2627467 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2627336..2627467 - |
| 1690881005.478623-CDS-C-linearis_contig7:2627335..2627467 | 1690881005.478623-CDS-C-linearis_contig7:2627335..2627467 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2627336..2627467 - |
| 1622930310.3662663-CDS-C-linearis_contig7:2627782..2627869 | 1622930310.3662663-CDS-C-linearis_contig7:2627782..2627869 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2627783..2627869 - |
| 1690881005.4922838-CDS-C-linearis_contig7:2627782..2627869 | 1690881005.4922838-CDS-C-linearis_contig7:2627782..2627869 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig7 2627783..2627869 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig7.14495.1 >prot_C-linearis_contig7.14495.1 ID=prot_C-linearis_contig7.14495.1|Name=mRNA_C-linearis_contig7.14495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=435bp
MTEQFSFVARTSVEMLVLRRKHFNIIEIPMLEILKANHAARLQWRARRKQ EAHRGRAVLRAAKRALGRAAVRARSFGEDPTLQPHHAQQPHQANASSATG SLPQEGRLHPSGDSSDAVALLAQRERGRQAPSAVNIAGRPPLSRGGPIAD NNKYLHRGGREPATAYTGVAAVSHEPRAGGDWEGGGGGDDAVGGGDDVSL AGLSLASGDSMQYSVDSGWLPNVPGTGRPSPTGRSGGGSPGGFPSLDDGI DQQQPDQLGRLQDLQSGGWRPAAGDGNSSGLLGVSVSLPNLGLPTGPRDE GAAGRGQGYRGLKGGARGGKPGRYTGHKQPGLHGSKSFGAFWGVDPQQAG DDHYSPPRPRLSNSNHPRNGTGQGHGPAPQAHQKPARRKAAAGARRRSGP GKPSGATSDVEVVPAVKSAVELTPVRGISRVWAG* back to topmRNA from alignment at C-linearis_contig7:2624817..2628282- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig7.14495.1 ID=mRNA_C-linearis_contig7.14495.1|Name=mRNA_C-linearis_contig7.14495.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3466bp|location=Sequence derived from alignment at C-linearis_contig7:2624817..2628282- (Chordaria linearis ClinC8C monoicous) GGGGGGAACCCGACAACGGCCGACAGCCCTCGAGAAAGAGACGGGGCGGG
AGCAGAGTTCGTCTACAAGGTTTGATTTTTCGGGGGTCAGAGAGCGTGAA
CCCGCCCAAAACGTGACCGACTCTGCCACTACAGGACGTCGCATGGGTCT
GGGGGTTGAGGGGTAAGGGTCTCCTTGCACCCGATGAAGGCGTTGATCGG
TCGGCGGGGCAAAAAAGCCTTCGGTAGTTGTTTCAGTTGCTCGTTGATTT
TGGGCTGATTTATGTTTCACGTCGCGTCTTGTTCCACCCACCGCATGCAC
AACAGACGGCTCGAAGAGTTCTCACCGTGCTGGAGAGCGGGGAGTATTTC
GGAGAGTCTGGCGTCTTGACGTACTTCAACGGCGGCAGCAAGGCCTCATC
TACTGCTCCCCCGATGACGGAACAATTCAGCTTCGTGGCACGCACCAGCG
TCGAGATGCTGGTGCTACGTCGGAAGCACTTCAACATCATTGAAATACCG
GTAACCGGATGTGGCGGTTTTCTTTTCGGACGGGTGGAGATAGTGATGTT
GTCAACAGGACATGTGCTGCTGCCTCCGTCGACTCTCTCATTCCCAGTGC
GGTGAAGCACACGTTGCCGGGTGACTGATAAGCGAACTTCCAACTTAATT
GTGAGTCCCTTGTTCAGGGGGGCTCGTTTGCTCGAATATGTGCCGAACGA
AGGGTGATGGACTTGCGGACGATTAGCCTCTTGCGCATGGCCGCTTTGGA
TGCTTGCTGCTGTCTGAATTGGTACACCGTACCATGCTCGTGCACGCAAA
CGGCCGTGCACCCAGATGCTGGAGATCCTGAAGGCTAACCATGCCGCACG
CCTGCAGTGGAGGGCCCGGCGCAAGCAGGAAGCACACAGGGGAAGGGCCG
TGCTGAGGGCGGCCAAGCGCGCGCTCGGTCGGGCTGCCGTGAGAGCGGTG
AGACAGAGAGGTAGATGGGCGCGAAGATCGGGTGTGAATGCCGTTAGCCT
ATGAATGTAGGTGACTACAATCGGGCTAGTTTTCGGACGATCGAGGAGAA
CACTCGCACAATGGAAAAAACTCACCACCCGCGCATTTTTCTCACAGTAT
GTGAACCACCGCGCGACGGAAGACCGACTAGAACCATGCAGCGCTACACG
CGAACGGGTTTCCCTCGTGCCACAAAGTGCCGCAGCCCAATAGTCGTTTC
GCTAGCATCGTCCCTTCACCACTGCATAGACAGCTCTTATCGCCATATAC
TCTTGTTGCCGCTGACTCCACCTCCACAATCTTCCCCGCACTCACACCCC
ATCCCACACCCGCGCATCAAATACCCCCCAAGAGGAGCTTCGGTGAAGAC
CCGACTCTACAGCCCCACCACGCGCAACAACCGCATCAAGCCAACGCTTC
TTCTGCGACTGGATCCTTGCCGCAGGAGGGTCGGCTGCACCCTTCCGGAG
ACAGCAGCGACGCCGTCGCGTTGTTGGCTCAACGAGAAAGAGGAAGACAA
GCCCCCAGCGCGGTGAACATTGCTGGCAGACCCCCCTTATCGCGCGGCGG
CCCCATCGCGGACAACAACAAGTATCTTCACCGAGGAGGAAGAGAACCGG
CGACGGCATACACCGGTGTGGCGGCGGTTTCGCATGAGCCAAGGGCAGGC
GGAGACTGGGAGGGAGGCGGCGGCGGAGACGATGCGGTCGGGGGTGGCGA
CGATGTTTCCCTTGCGGGGCTGAGTCTGGCGTCTGGGGACAGCATGCAGT
ACAGCGTGGATTCCGGGTGAGAGTAGGGTGGATGGGGGCAGGCCAGGCAG
GCGCGTGCGAGCCTCGATGAGAATGAATGGGAGGCGGCACGAAGGCAATG
CTGCTAGAGAGGTTGATACTTTTGCTGTGTCATAAAATATAAAATGCCGC
AAAAACTCGCACAACCCCCCGACAAAGCAACCGATCAAGACTTTCTGCCT
GCACATGTACCGCCTGTGAAGAACACGCTGTTCGCGCGAAGCACGGATGG
CATCAATTGCATGCAAGGTTTGGGCAGAACGACACATCTCTTTATCGTCC
CGTTTGCCAAATATCGAACGCTAGGTGGCTCCCCAACGTACCGGGTACGG
GGAGACCATCGCCGACAGGACGCAGTGGAGGCGGCAGCCCTGGGGGATTT
CCAAGCCTCGACGATGGCATCGACCAACAGCAGCCGGATCAACTTGGGCG
GCTGCAAGACCTCCAATCAGGGGGCTGGAGACCAGCGGCCGGCGATGGCA
ATTCGTCGGGGTTATTGGGAGTTTCTGTCTCCCTGCCAAACTTAGGGCTA
CCTACGGGCCCAAGGGACGAAGGAGCTGCCGGCAGAGGGCAGGGTTACCG
AGGACTGAAGGGCAAGTGGACACAGCACCATATTTTCAGACGTGTGCCCG
GCAAGTTGCCGAGAATCACGTTGTTGCTGAGATGATAGCGATGAATGGCT
CAGCGCGGAACCATGTTTCATGTCAGGTGACCTGTTCCGGCAGTAGGCAG
TGGGCAGTGGCATCGATACCATGACTGCAATGACATGCACCTGGAACTAG
GGACATGCTTTCAGATCTACTTGCGCATGAAGGCAGCCGCGACACGCCTC
GAACAGAACTTTGAGCCTTTCTCCACCACAACTGTCGGCAGGATTTGCGT
CTATGTACGTACTCCTCCAACGCCAAGAACGTGTCCAGAGTGTGCAGCGA
ACGGCGCAAACACGATTGAGCAACACGAGGCACGCACAAGGCACTCCCTC
CAACGTTTGGGCCTCCAACCTAAACTACCCGTCGTGTGTGCGTTCTGAGG
CTGTCGAGGCGCTCTTCTGTTGATCGAAATACACAAGTGACCCACAGTCT
CCCTTGTACACACAAACACCACAGGAGGTGCCCGCGGCGGAAAACCTGGC
CGGTATACGGGACACAAGCAGCCAGGCCTGCACGGTAGTAAAAGCTTCGG
GGCCTTCTGGGGAGTGGATCCTCAACAAGCAGGCGACGACCACTATTCTC
CACCGCGGCCGCGTCTTAGCAACAGTAACCACCCGAGAAACGGCACGGGT
CAGGGTCACGGCCCTGCACCACAAGCGCATCAGAAACCCGCCAGACGTAA
AGCTGCCGCTGGCGCGCGGCGTAGGTCAGGACCAGGCAAACCGAGTGGGG
CGACGTCGGACGTGGAAGTTGTGCCCGCGGTGAAGAGCGCCGTGGAGCTC
ACCCCGGTTCGGGGGATCAGCCGAGTGTGGGCCGGGTAATTGAAGGCGGT
CTCCATCGCGTGCCCACGTTTTCTCGTCCACACTATGTACGTCGTCTACA
TGTGTGTTTGTGGGGTGTGGGTATTTCAGCGTTGGCTCAAGAAGTTCTGT
TTGCGTTTCCAAAACCTGATCCATAAACCGGAGCTGAATGCTGGAGGATA
CGCGAAGGGAGGAGGGCGAGGTGTGTTGCGTGCGGTCTCCTCGGTACATT
CGCTCCTGAAGAGGCC back to topCoding sequence (CDS) from alignment at C-linearis_contig7:2624817..2628282- >mRNA_C-linearis_contig7.14495.1 ID=mRNA_C-linearis_contig7.14495.1|Name=mRNA_C-linearis_contig7.14495.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at C-linearis_contig7:2624817..2628282- (Chordaria linearis ClinC8C monoicous) ATGACGGAACAATTCAGCTTCGTGGCACGCACCAGCGTCGAGATGCTGGT GCTACGTCGGAAGCACTTCAACATCATTGAAATACCGATGACGGAACAAT TCAGCTTCGTGGCACGCACCAGCGTCGAGATGCTGGTGCTACGTCGGAAG CACTTCAACATCATTGAAATACCGATGCTGGAGATCCTGAAGGCTAACCA TGCCGCACGCCTGCAGTGGAGGGCCCGGCGCAAGCAGGAAGCACACAGGG GAAGGGCCGTGCTGAGGGCGGCCAAGCGCGCGCTCGGTCGGGCTGCCGTG AGAGCGATGCTGGAGATCCTGAAGGCTAACCATGCCGCACGCCTGCAGTG GAGGGCCCGGCGCAAGCAGGAAGCACACAGGGGAAGGGCCGTGCTGAGGG CGGCCAAGCGCGCGCTCGGTCGGGCTGCCGTGAGAGCGAGGAGCTTCGGT GAAGACCCGACTCTACAGCCCCACCACGCGCAACAACCGCATCAAGCCAA CGCTTCTTCTGCGACTGGATCCTTGCCGCAGGAGGGTCGGCTGCACCCTT CCGGAGACAGCAGCGACGCCGTCGCGTTGTTGGCTCAACGAGAAAGAGGA AGACAAGCCCCCAGCGCGGTGAACATTGCTGGCAGACCCCCCTTATCGCG CGGCGGCCCCATCGCGGACAACAACAAGTATCTTCACCGAGGAGGAAGAG AACCGGCGACGGCATACACCGGTGTGGCGGCGGTTTCGCATGAGCCAAGG GCAGGCGGAGACTGGGAGGGAGGCGGCGGCGGAGACGATGCGGTCGGGGG TGGCGACGATGTTTCCCTTGCGGGGCTGAGTCTGGCGTCTGGGGACAGCA TGCAGTACAGCGTGGATTCCGGAGGAGCTTCGGTGAAGACCCGACTCTAC AGCCCCACCACGCGCAACAACCGCATCAAGCCAACGCTTCTTCTGCGACT GGATCCTTGCCGCAGGAGGGTCGGCTGCACCCTTCCGGAGACAGCAGCGA CGCCGTCGCGTTGTTGGCTCAACGAGAAAGAGGAAGACAAGCCCCCAGCG CGGTGAACATTGCTGGCAGACCCCCCTTATCGCGCGGCGGCCCCATCGCG GACAACAACAAGTATCTTCACCGAGGAGGAAGAGAACCGGCGACGGCATA CACCGGTGTGGCGGCGGTTTCGCATGAGCCAAGGGCAGGCGGAGACTGGG AGGGAGGCGGCGGCGGAGACGATGCGGTCGGGGGTGGCGACGATGTTTCC CTTGCGGGGCTGAGTCTGGCGTCTGGGGACAGCATGCAGTACAGCGTGGA TTCCGGGTGGCTCCCCAACGTACCGGGTACGGGGAGACCATCGCCGACAG GACGCAGTGGAGGCGGCAGCCCTGGGGGATTTCCAAGCCTCGACGATGGC ATCGACCAACAGCAGCCGGATCAACTTGGGCGGCTGCAAGACCTCCAATC AGGGGGCTGGAGACCAGCGGCCGGCGATGGCAATTCGTCGGGGTTATTGG GAGTTTCTGTCTCCCTGCCAAACTTAGGGCTACCTACGGGCCCAAGGGAC GAAGGAGCTGCCGGCAGAGGGCAGGGTTACCGAGGACTGAAGGGTGGCTC CCCAACGTACCGGGTACGGGGAGACCATCGCCGACAGGACGCAGTGGAGG CGGCAGCCCTGGGGGATTTCCAAGCCTCGACGATGGCATCGACCAACAGC AGCCGGATCAACTTGGGCGGCTGCAAGACCTCCAATCAGGGGGCTGGAGA CCAGCGGCCGGCGATGGCAATTCGTCGGGGTTATTGGGAGTTTCTGTCTC CCTGCCAAACTTAGGGCTACCTACGGGCCCAAGGGACGAAGGAGCTGCCG GCAGAGGGCAGGGTTACCGAGGACTGAAGGGAGGTGCCCGCGGCGGAAAA CCTGGCCGGTATACGGGACACAAGCAGCCAGGCCTGCACGGTAGTAAAAG CTTCGGGGCCTTCTGGGGAGTGGATCCTCAACAAGCAGGCGACGACCACT ATTCTCCACCGCGGCCGCGTCTTAGCAACAGTAACCACCCGAGAAACGGC ACGGGTCAGGGTCACGGCCCTGCACCACAAGCGCATCAGAAACCCGCCAG ACGTAAAGCTGCCGCTGGCGCGCGGCGTAGGTCAGGACCAGGCAAACCGA GTGGGGCGACGTCGGACGTGGAAGTTGTGCCCGCGGTGAAGAGCGCCGTG GAGCTCACCCCGGTTCGGGGGATCAGCCGAGTGTGGGCCGGGTAAGAGGT GCCCGCGGCGGAAAACCTGGCCGGTATACGGGACACAAGCAGCCAGGCCT GCACGGTAGTAAAAGCTTCGGGGCCTTCTGGGGAGTGGATCCTCAACAAG CAGGCGACGACCACTATTCTCCACCGCGGCCGCGTCTTAGCAACAGTAAC CACCCGAGAAACGGCACGGGTCAGGGTCACGGCCCTGCACCACAAGCGCA TCAGAAACCCGCCAGACGTAAAGCTGCCGCTGGCGCGCGGCGTAGGTCAG GACCAGGCAAACCGAGTGGGGCGACGTCGGACGTGGAAGTTGTGCCCGCG GTGAAGAGCGCCGTGGAGCTCACCCCGGTTCGGGGGATCAGCCGAGTGTG GGCCGGGTAA back to top
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