mRNA_C-linearis_contig112.1551.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A6H5JRG4_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG4_9PHAE) HSP 1 Score: 530 bits (1366), Expect = 4.930e-176 Identity = 340/506 (67.19%), Postives = 378/506 (74.70%), Query Frame = 1
Query: 223 AGPLVVAAMVALNLSTASLLVAATALPRSRWVAAPPQAGR-HDNGSPNCDQPVVAVAVGVRCGATSSGDSEPGGALEGPAAST-SEGGLSATVKKASNKLLDAVGGLLGVTGSAGGXXXXXXXXXXXXXXXXKSSKSSKGGSKTPGGVGFTENFEAKHGKSHPKFNEKSFSEATETAWVRNRLCLVYIPAEKGGGSKAAKVDDAICKALADAEVAGFVDANFVMWVPGGKSSAQRXXXXXXXXXKRLGARSLPFLGVVNSASAMDKMTLERRLKRSTAAMHHCNPPPSASQMVSWMTRVLELKRGLLEVEVAEQQRLKDEDTIHTERVEGYSKSLKDDALREIREKEEEAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMGEEPPESAVK--EGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGLGKQALLFVEQKP----------IDTKETETVAGAAGEAAE 1698
AGPL+ A+VA+NLSTA LLV A +LPRSRWVAA G HD+ + + + AVAVGVRCGATSSG + G + P S SEGGL+ATVK+ +KL V LLG GS GXXXXXXXXXXXXXXXX GFTE FEAK+GK HPKFNEKSF +ATETAW RNRLCLVYI AEKG G KAAKVDDAICKALAD EVA F+D++FVMWVPGGKSSAQR KR+GARSLPFLGVVNSAS DKMTLER+L+RST AMHHCNPPPSASQMVSWM RVLELK+ LLEVE+AEQQRLKDEDTI+TERVEGYSKSLKDDALRE+RE+EEEA+ XXXXXXXXXX +G+EPPESAVK E A+TLMLRL DGSR+RRRFLR+DPMGKVLDWADVQGVDL AQRLSST+PKASFS+PGDSG++IEEAGLG+QALLFVEQKP +D E AG G E
Sbjct: 18 AGPLLFVALVAVNLSTAPLLVTAKSLPRSRWVAASSNGGSLHDSSASSNAR---AVAVGVRCGATSSGKEDEGEDTDEPPRSPLSEGGLAATVKETISKLTGVVRSLLGGKGSKSGXXXXXXXXXXXXXXXXXXXXXG----------GFTEAFEAKYGKRHPKFNEKSFGDATETAWGRNRLCLVYIAAEKGSGGKAAKVDDAICKALADPEVAEFIDSSFVMWVPGGKSSAQRVAASAAAA-KRVGARSLPFLGVVNSASETDKMTLERKLERSTVAMHHCNPPPSASQMVSWMARVLELKKNLLEVELAEQQRLKDEDTIYTERVEGYSKSLKDDALREVREREEEAEXXXXXXXXXXXXXVLEAKQREDVERREKKAAELGQEPPESAVKGAEAKAATLMLRLADGSRIRRRFLRSDPMGKVLDWADVQGVDLDAQRLSSTMPKASFSHPGDSGMTIEEAGLGRQALLFVEQKPKGATGDSDGTVDEAEAAAAAGDEGTERE 509
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: D7FVT5_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT5_ECTSI) HSP 1 Score: 300 bits (768), Expect = 1.530e-91 Identity = 164/238 (68.91%), Postives = 184/238 (77.31%), Query Frame = 1
Query: 1015 MTLERRLKRSTAAMHHCNPPPSASQMVSWMTRVLELKRGLLEVEVAEQQRLKDEDTIHTERVEGYSKSLKDDALREIREKEEEAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMGEEPPESAVK--EGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGLGKQALLFVEQKPIDTK--------ETETVAGAAGEAAE 1698
MTLER+L+RST AMHHCNPPPSASQMVSWM RVLELK+ LLEVE+AEQQRLKDEDTI+TERVEGYSKSLKDDALRE+RE+EEEA+RAR +G+EPPESAVK E TA+TLMLRL DGSR+RRRFLR+DPMGKVLDWADVQGVDL AQRLSST+PKASFS+PGDSG++IEEAGLG+QALLFVEQKP + +TE A A E AE
Sbjct: 1 MTLERKLERSTVAMHHCNPPPSASQMVSWMARVLELKKSLLEVELAEQQRLKDEDTIYTERVEGYSKSLKDDALREVREREEEAERARLAEEQRVAQEALEAKLREDVERREKKAAELGQEPPESAVKGAEATAATLMLRLADGSRIRRRFLRSDPMGKVLDWADVQGVDLDAQRLSSTMPKASFSHPGDSGMTIEEAGLGRQALLFVEQKPKEATGDSDGTVDDTEAAAAAGDEDAE 238
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A7S4DJA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJA1_HETAK) HSP 1 Score: 119 bits (298), Expect = 1.170e-25 Identity = 112/330 (33.94%), Postives = 159/330 (48.18%), Query Frame = 1
Query: 736 TETAWVRNRLCLVYIPAEKGGGSKAAKVDDAICKALADAEVAGFVDANFVMWVPGGKSSAQRXXXXXXXXXKRLGARSLPFLGVVNSASAMDKMTLERRLKRSTAAMHHCNPPPSASQMVSWMTRVLELKRGLLEVEVAEQQRLKDEDTIHTERVEGYSKSLKDDALREIREKEEEAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMGEEPPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGLGKQA--LLFVEQKPIDTKETETVAGAAGEAAEAKGPVED 1719
T+ A + +VYI G K K DD +C AL D +V ++ +F W S + LG + P L V+ ++++ K R A HH NP P+A ++SW+ + ++ +GLL + Q+++K E + E+ E Y +S++ D L EI+E XXXXXXXXXXXXXXXX A+G EPP A T+ LR DG R RRRFL A+ + KV DWAD + VD+ +L ST P +F+ + VS+ + LG QA L +PI K T AAE K E+
Sbjct: 1 TDFARQKGIFTVVYIRPNNGAKGKTKKQDDRVCGALTDKKVIYQINKHFAFW------STAQSSKQAGQLASLLGEKKYPILAVIYTSASNGK--------RKVIAKHHLNPAPTAPALLSWLEQTRKMNKGLLLGDRRRQEKIKKEIALMKEQREAYKQSIQQDKLNEIQEXXXXXXXXXXXXXXXXXXXXXXXXXALIAQRRAAKKEALGTEPPADGAP---AVTVQLRFADGRRARRRFLAAELLEKVFDWADTEEVDINQAKLVSTYPPRTFTVNENQAVSLADL-LGHQAKTLSLTVDEPIVKKVT---------AAEGKDEEEE 303
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A5J4Z6R3_PORPP (FAS-associated factor 2-B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6R3_PORPP) HSP 1 Score: 84.3 bits (207), Expect = 2.990e-13 Identity = 114/343 (33.24%), Postives = 158/343 (46.06%), Query Frame = 1
Query: 664 FTENFEAKHGKSHPKFNEKSFSEATETAWVRNRLCLVYIPAEKGGGSKAAKVDDAICKA-LADAEVAGFVDANFVMWVPGGKSSAQRXXXXXXXXXKRLGARSLPFLGVVNSASAMDKMTLERRLKRSTAAMHHCNP---PPSASQMVSWMTRVLELKR-GLLEVEVAEQQRLKDEDTIHTERVEGYSKSLKDDALREIREKEEEAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXXLA------------MGEEPPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGLGKQALLFVEQK 1641
F FEA G +H +F S +A TA + LVYI E + ++ C++ L D +V F+D F+ W +A LP L +V R AM N P A+ + WM RV E L+ + +++R T R+ LR+ +++EE QRA XXXXXXXXXXXXXXXXXXXXXXXXX +GEEPP ++++LR+ DGSR RRFLR + + DWAD GV++ L S+ P+ +F YP D +SI EAGL A+L +E++
Sbjct: 155 FAIKFEASFGNTHARFTRTSLVQALRTAGREYKFALVYIHDENR------EACNSFCRSVLQDGQVIRFIDEAFIFW------AASTRFAETVQARSEFRLTHLPALAIVEGHPT--------RPPGRVIAMKQANAFGGPMDAAGVFQWMQRVQERYGVSLISARIQQEER-------ETNRL-----------LRQ--QQDEEFQRALEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQELLGEEPPAQGA---VTASVVLRMPDGSRNTRRFLRDTKLEMLFDWADTLGVEIGQALLVSSYPRRAFKYPEDKDMSIAEAGLTPSAMLLIEER 454
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: R7QB66_CHOCR (UBX domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB66_CHOCR) HSP 1 Score: 78.2 bits (191), Expect = 2.690e-11 Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1
Query: 1363 AMGEEPPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGLGKQALLFVEQK 1641
A+GEEP + G AS +M RL DGSRV RRF +A+ M V DWA+V VD+ L +T P+ S YP D+ +++E+AGL A+L +E++
Sbjct: 358 ALGEEPEKGP---GVASVVM-RLPDGSRVGRRFEKANAMEVVFDWAEVNRVDIEKASLVTTYPRRSLRYPEDADMTVEQAGLFPSAMLLLEER 446
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A152AA02_9MYCE (UAS domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152AA02_9MYCE) HSP 1 Score: 64.7 bits (156), Expect = 3.200e-7 Identity = 87/326 (26.69%), Postives = 147/326 (45.09%), Query Frame = 1
Query: 685 KHGKSHPKFNEKSFSEATETAWVRNRLCLVYIPAEKGGGSKAAKVDDAICKA-LADAEVAGFVDANFVMWVPGGKSSAQRXXXXXXXXXKRLGARSLPFLGVV--NSASAMDKMTLERRLKRSTAAMHHCNPPPSASQMVSWMTRVLELKRGLLEVEVAEQQRLKDEDTIHTERVEGYSKSLKDDALREIREKEEEAQRARXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMGEEPPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADVQGVDLAAQRLSSTLPKASFSYPGDSGVSIE----EAGLGKQALLFVEQK 1641
++G +HP F + S++EA A + ++ L+YI + K S+ CK L E F+D+ +V+W +S + A + P+LG++ NS S + + T + S ++ Q++S MT + E+ L V +EQ + + + I E+ E Y SLK D +E XXXXXXXX XX + +EP G S + ++L+DG+R++R FL+ D +G ++D+ D + + + T SYP S ++++ E GL ALLF+ +K
Sbjct: 54 RYGSTHPSFRQGSYNEAVSFAKSKFKILLIYIHSSKHPNSQQ------FCKEILFTREFKEFIDSTYVIWACDISTSI------GFKVFNAMRASTFPYLGMLCCNSISGLTQGTQTKIEDFSGVSLQL-----PRDQIMSNMTGIYEIYGPHLVVAKSEQDQREQDRFIRQEQDEAYLISLKQDQEKERLXXXXXXXXXXXXXXXXXXEXXRLQKESEMLDRKESKKIRFEQEPT------GPVSKVAIKLSDGTRIQRNFLKTDTIGDIMDYIDTKIQEPIDNYILMT------SYPKKSLMNLDKTIFEEGLFPDALLFLSEK 350
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A7J7CKD9_TRIWF (Putative ara4-interacting protein n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CKD9_TRIWF) HSP 1 Score: 63.5 bits (153), Expect = 3.600e-7 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1378 PPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADV-QGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGL-GKQALLFVE 1635
PPE +++ A TL++R+ DGSR RRFL++D + + D+ D+ +GV RL P+ +FS G+SG+++ E GL KQ LF+E
Sbjct: 179 PPEPLLEDENAVTLLVRMPDGSRHGRRFLKSDKLQALFDFIDIGRGVKPGTYRLVRPYPRRAFS-DGESGLTLNELGLTSKQEALFLE 265
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: UPI001CC45D49 (plant UBX domain-containing protein 8 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC45D49) HSP 1 Score: 62.0 bits (149), Expect = 4.730e-6 Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1378 PPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADV-QGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGL-GKQALLFVE 1635
P E A + A TL++R++DGSR RRFL++D + + D+ DV +GV +L P+ +FS G+SG+S+ E GL KQ LF+E
Sbjct: 526 PQEPASDDENAVTLLVRMSDGSRRGRRFLKSDKLQSLFDFIDVGRGVKPGTYKLVRPYPRRAFS-DGESGLSLGELGLTSKQEALFIE 612
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: A0A1R3IA25_COCAP (UBX domain-containing protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3IA25_COCAP) HSP 1 Score: 61.6 bits (148), Expect = 5.990e-6 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1378 PPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADV-QGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGL-GKQALLFVE 1635
P E AV E A TL++R+ DGSR RRFL++D + + D+ D+ +GV RL P+ +FS G+S +++ E GL KQ LF+E
Sbjct: 494 PQEPAVDEENAVTLLVRMPDGSRRGRRFLKSDRLQSLYDFIDIGRGVKPGTYRLVRPYPRRAFS-DGESSLTLNEVGLTSKQEALFLE 580
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Match: UPI001CC71E8A (plant UBX domain-containing protein 8-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC71E8A) HSP 1 Score: 61.2 bits (147), Expect = 8.090e-6 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 1378 PPESAVKEGTASTLMLRLTDGSRVRRRFLRADPMGKVLDWADV-QGVDLAAQRLSSTLPKASFSYPGDSGVSIEEAGL-GKQALLFVE 1635
P E A + A TL++R+ DGSR RRRFL++D + + D+ DV +GV +L P+ +FS G+S +S+ E GL KQ LF+E
Sbjct: 515 PQEPASDDDNAVTLLVRMPDGSRRRRRFLKSDKLQSLFDFIDVGRGVKPGTYKLVRPYPRRAFS-DGESELSLGELGLTSKQEALFIE 601 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1551.1 >prot_C-linearis_contig112.1551.1 ID=prot_C-linearis_contig112.1551.1|Name=mRNA_C-linearis_contig112.1551.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=516bp MSLCCRRHRRGGVGAGPLVVAAMVALNLSTASLLVAATALPRSRWVAAPPback to top mRNA from alignment at C-linearis_contig112:427676..434410+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1551.1 ID=mRNA_C-linearis_contig112.1551.1|Name=mRNA_C-linearis_contig112.1551.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6735bp|location=Sequence derived from alignment at C-linearis_contig112:427676..434410+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:427676..434410+ >mRNA_C-linearis_contig112.1551.1 ID=mRNA_C-linearis_contig112.1551.1|Name=mRNA_C-linearis_contig112.1551.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3096bp|location=Sequence derived from alignment at C-linearis_contig112:427676..434410+ (Chordaria linearis ClinC8C monoicous)back to top |