mRNA_C-linearis_contig112.1544.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: D7FVS8_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS8_ECTSI) HSP 1 Score: 717 bits (1851), Expect = 4.140e-240 Identity = 426/759 (56.13%), Postives = 515/759 (67.85%), Query Frame = 1
Query: 1306 RTGGGAEAILLSVFEDFDRHGNGTLSMGRFREALDDVNVRVSEQTLLEVGRYFQAPTLKYH--RSEHGNHDSGYRSTHGSRGTAIDCAPLEMSYIPLMDIVFGRKRVREPTSGVLTDDEDATSDDRKRDSEGNPGHNLRQE---IAQPGGRRTSKDRDERTDDNNLCYVNVDRIRAARVAVIETPDALGRSPLFLAAAADGVSAVKTLIRHGAASSLAVEGTGLTPYCVAPSSLMRRVLAAEARHSLYQAISKRSNGHHL------VAGGAKEDGDVEQAAGLDDPAKTLETL-----------RMETWVLTLAEGEQAKTTASETRVDQKTSLHLAATAGLPEAVKDLVRRGMGEPKDRGRHKTAAKTTGGACPAQPAWKTSWKPPEHVCGEPRLNTAHHALDHQSFSQDLSNAATRTTDANGWSALHACCDEASPHHYSCALALLGSQMDPNARTNTEKTPLHVAAGAASSAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVARACQGSARSSKDTTGKPWACPGVNHKTPGLGFTPLHACIAGLAAVTRGVDVSRPCTPPRPRGQAN-VPSRPSLYARLARGYGRPAR---SRSNQTRE-TVLGSPAVAG---------NYVGVCRTLLSAAADVQALDARCRIPLALAAAAGSLEVVE 3474
R GGAEA LLSVFEDFDR+G+GTLSM +FRE L DVNVRVSEQTLLEVGRYF+A TLK R +H DS R ++ D +E+SY+PLMDIVFGRK V+E + + ++ +D +DD D E G+ R+E + P + D D + ++ C+V++DRIRAAR+AV+ET DAL R PLFLAAAA V A KTLIRHGAAS+ AV+GTGLTP+ V+PS LMRRVLAAEAR SL Q +SKR+ L + KE+ ++ + LD ++ E+ RM W+ TLAE E A+T ASE RVD KTSLHLAATAGLP++V DL+ RG+GE + K T GA W TS KP E + G RL+T H A DH + S+ + NAAT TDANGWSALHACC E S HYSCALALLGS DPNARTNT KTPLH+AA A+ A+ D+IP+LVSHG LEA+D +GLRPIH AA+ GRH+AL ALL AGA+ WSVT R+WNA HYS A G L TRLL YWD+DSGVL RQ+NSAG AM+LGRT+ +R A ++WEAAA G+ E V+R+CQ +RS KD GKPW CPGVN KTPGLGFTPLHAC+AGLAAVTRG DVS PC PPR +++ V RPSLY LAR +PAR R TRE G+P + G +Y G CR LLSAAADV ALD RCR PLALAAA+G++E+VE
Sbjct: 2 RKRGGAEAFLLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEVGRYFRARTLKSRSGRHQHEIRDSQRGDVRVRRDSSTDSTLVEVSYVPLMDIVFGRKEVKE-SRRMGSNQDDKGTDDPSNDWEDERGYEPRRESKALCLPEEYSSEDDGDSGSCEH--CFVDIDRIRAARIAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAASACAVDGTGLTPHSVSPSLLMRRVLAAEARKSLCQTLSKRTEDRSLGGCIPDMTSDRKEERELLRER-LDHGSELKESSECESLQRDDNRRMAMWISTLAEDELAQTRASEARVDLKTSLHLAATAGLPDSVTDLLGRGIGE---------SGKETVGATQGCAKWDTSSKPSEDIIGRARLSTGHCAYDHHNISRGMPNAATLATDANGWSALHACCTEDSTQHYSCALALLGSHDDPNARTNTGKTPLHIAASASGPAK----SDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRHIALLALLTAGANPWSVTSRRWNALHYSAASGSLWCTRLLVYWDSDSGVLARQENSAGTTAMDLGRTDDIRLAMSSIWEAAALGETERVSRSCQEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMAGLAAVTRGDDVSLPCAPPRLLHKSDKVAQRPSLYTHLARRCCKPARRHRGRVASTRERNDSGTPELRGKPPGAFDRRDYAGACRALLSAAADVHALDNRCRTPLALAAASGNVEIVE 743
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: D7FVS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS9_ECTSI) HSP 1 Score: 150 bits (378), Expect = 3.260e-38 Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 514 MAVGTKNVAMARVLMQQWRRELNRSLEDELDSLGQRRDMFIQGVLSSSTTDGRSPPGGDTAAYDIGCFEKWLSEERRRLVRVTELRCEECWRKAVTARDNMGRNPLHYAAGGTGTGETLL 873
MAVGTKNV M + LMQ WRR+LN+ LEDELD L RRDMFIQGV TT G P G T D+ FE+WL +ERRRLVRVTELRCEECWRK+VT+RD+ GR PLH+AA GT + LL
Sbjct: 1 MAVGTKNVRMVKTLMQYWRRDLNQRLEDELDFLDHRRDMFIQGVDVPQTTGGGRPAGKITID-DVDRFERWLFDERRRLVRVTELRCEECWRKSVTSRDDRGRTPLHWAASGTSSEAALL 119
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: A0A329T3Y4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T3Y4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.360e-13 Identity = 73/238 (30.67%), Postives = 103/238 (43.28%), Query Frame = 1
Query: 2500 DANGWSALHACCDEASPHHYSCALALLGSQ--MDPNARTNTEKTPLHVAA--------GAASSAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVARACQG-SARSSKDTTGKPWACPGVNHKTPGLGFTPLHACIAGLAAV 3180
DAN W+ALH C DEA+ H S A L+ S +D NAR+ ++PLHVA GA S + + L ADL+ +D P+ +A + G + LL AG D + KWN H++ G + L WDADS + G +++ + + +R LW G+V+HV R S S+ G V KT TPLH + G V
Sbjct: 559 DANKWTALHYCADEATVRHLSIAQLLVESPKPVDVNARSLKGRSPLHVAVRSRKPNNNGAVESQDRL---SFVTYLHDCKADLDLKDRHEATPLLLACRGGDVGLVRFLLRAGCDPTATGDNKWNPLHFAAIHGNPSMVQFLLSWDADSRLWIDSLGIQGRKPVDVAKNDSIRQMLVNLWAECYNGNVDHVRRLLLARSTHGSQSPMGA--GSVSVKDKTAQAERTPLHLAVLGYRNV 791
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: D0NG66_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NG66_PHYIT) HSP 1 Score: 86.3 bits (212), Expect = 2.370e-13 Identity = 87/334 (26.05%), Postives = 138/334 (41.32%), Query Frame = 1
Query: 2482 AATRTTDANGWSALHACCDEASPHHYSCALALLGS--QMDPNARTNTEKTPLHVAA----------GAASSAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVARACQGSARSSKDTTGKPWACPGVNHKTPGLGFTPLHACIAGLAAVTRGVDVSRPCTPPRPRGQANVPSRPSLYARLARGYGRPARSRSNQTRETVLGSPAVAGNYVGVCRTLLSAAADVQALDARCRIPLALAA 3447
A T DAN W+ LH C DEA+P H A L+ S ++D NA++ ++PLH+A A + E + + L A+L+ +D P+ +A + G LL AG D +V KWN H++ G + L WDADS + G +++ + N +R LW G+V+HV R ++ + + V T T LH I+G + +++ P + PSL RL + +++++ R++ Y+ V LL A AD+ D PL LAA
Sbjct: 294 ADPNTRDANKWTPLHYCADEATPRHLIIAQLLVESSKRVDVNAKSLKGRSPLHIAIRSINHNTRNNNGAEACESQDRLSFVTYLHECRANLDLKDNHEATPLLLACRGGDVGVATFLLRAGCDPTAVGDNKWNPLHFAAIRGNPSMVQFLLSWDADSRLWIDSPGIQGRRPVDVSKNNSIRQMLVNLWMECYNGNVDHVRRLLLTRSKEHSQAS-QGVQLMSVKDTTTQTERTSLHLAISGYM---KALELPEP----------KISLTPSLEERLKQ-------AKASEVRKSA------PRRYLQVAILLLQAGADLSTADRWGITPLMLAA 600
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: W2RCB7_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RCB7_PHYPN) HSP 1 Score: 84.3 bits (207), Expect = 1.200e-12 Identity = 70/238 (29.41%), Postives = 101/238 (42.44%), Query Frame = 1
Query: 2500 DANGWSALHACCDEASPHHYSCALAL--LGSQMDPNARTNTEKTPLHVAA----------GAASSAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVAR---ACQGSARSSKDTTGKPWACPGVNHKTPGLGFTPLHACIAG 3168
DAN W+ LH C DEA+ H + A L L +D NA++ ++PLH+A A E + L + ADL+ +D G P+ +A LL AG D + KWN H++ G L WDADS + G +++ +T+ +R LW G+V +V R A ++RSSK+T V KT TPLH + G
Sbjct: 561 DANKWTPLHYCADEATARHLAIAQLLVELPKPVDINAKSLKGRSPLHIAVRSRKHKIRNNNGAEMCESHNRLLFVTYLHEYKADLDLKDNHGATPLLLACCGDDVDVTRFLLRAGCDPTATGDNKWNPLHFAAIHGNPSMVLFLLSWDADSRLWIDSPGIQGRKPVDISKTDNIRQMLTNLWMECYNGNVNNVRRLLLARSKTSRSSKET-----GVVSVTDKTAQAERTPLHLAVLG 793
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: A0A833X2E7_PHYIN (Ankyrin repeats (Many copies) n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X2E7_PHYIN) HSP 1 Score: 82.4 bits (202), Expect = 4.600e-12 Identity = 57/191 (29.84%), Postives = 88/191 (46.07%), Query Frame = 1
Query: 2482 AATRTTDANGWSALHACCDEASPHHYSCALALLGS--QMDPNARTNTEKTPLHVAAGAASSAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVAR 3048
A T DAN W+ LH C DEA+P H A L+ S ++D NA++ ++PLH+A + + G + A+L+ +D P+ +A + G LL AG D +V KWN H++ G + L WDADS + G +++ + N +R LW G+V +V R
Sbjct: 531 ADPNTRDANKWTPLHYCADEATPRHLIIAQLLVESSKRVDVNAKSLKGRSPLHIAIRSINHNTRNNNG-------AEAANLDLKDNHEATPLLLACRGGDVGVATFLLRAGCDPTAVGDNKWNPLHFAAIRGNPSMVQFLLSWDADSRLWIDSPGIQGRRPVDVSKNNSIRQMLVNLWMECYNGNVGYVRR 714
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: A0A6A3G3S6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3G3S6_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 3.170e-11 Identity = 71/242 (29.34%), Postives = 101/242 (41.74%), Query Frame = 1
Query: 2500 DANGWSALHACCDEASPHHYSCALALLGS--QMDPNARTNTEKTPLHVAAGAASSAEIRGGGD--------------LIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVARACQGSARSSKDTTGKPWACPG---VNHKTPGLGFTPLHACIAG 3168
DAN W+ LH C +EA+ +H S A L+ + +D NAR+ ++PLHVA + + G D + L ADL+ RD G P+ + + LL G D + KWNA H++ G L WDADS + G M + +++ VR LW G+V+ V R ARS + KP G V KT +PLH + G
Sbjct: 561 DANQWTPLHYCAEEATENHLSIACLLMETPQSVDVNARSLKGRSPLHVAVHSRKRKMLHGYDDSQSTGASSFKDRVSFVAYLHECKADLDLRDASGATPLLLVCRGDDVDVAEFLLRTGCDPTARGDNKWNALHFAAIRGNPRMVSFLQSWDADSRLWNDSPGIQGRKPMGVAKSDDVRQMLVNLWTECYSGNVDQVRRLLL--ARSKRGP--KPPEQIGFVSVKDKTAQTERSPLHLTVMG 798
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: A0A6A3PD06_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3PD06_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 9.430e-11 Identity = 67/251 (26.69%), Postives = 105/251 (41.83%), Query Frame = 1
Query: 2500 DANGWSALHACCDEASPHHYSCALALLGS--QMDPNARTNTEKTPLHVAAGAAS--------------SAEIRGGGDLIPVLVSHGADLEARDGEGLRPIHVAAKTGRHVALFALLAAGADAWSVTPRKWNAFHYSIAGGYLETTRLLAYWDADSGVLGRQKNSAGVAAMNLGRTNGVRSATPTLWEAAARGDVEHVARACQG-SARSSKDTTGKPWACPGVNHKTPGLGFTPLHACIAGLAAVTRGVDVS 3201
DAN W+ LH C +EAS +H + A L+ + +D NAR+ ++PLHVA + ++ ++ + L ADL+ RD G P+ +A + LL AG+D +WN H++ G L +WDADS + G M++ +++ VR LW G+V+ V R S R K + V KT +PLH + G + + S
Sbjct: 566 DANQWTPLHYCAEEASENHLTIARLLMETPQSVDVNARSLKGRSPLHVAVHSRKRKMLHDYDDTHLTRASSVKDRVSFVAYLHECKADLDLRDASGATPLLLACRGDDVDVAEFLLRAGSDPTVRGDNRWNPLHFAAIRGNPSMVSFLQFWDADSRLWNDSPGIQGRKPMDVAKSDDVRQILVNLWTECYSGNVDQVRRLLLAHSKRGPKPPEQIRFVS--VKDKTAQTERSPLHLTVVGYMDALQSQETS 814
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Match: A0A8J2SL70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL70_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 8.480e-7 Identity = 54/182 (29.67%), Postives = 80/182 (43.96%), Query Frame = 1
Query: 373 PESASNRVLRAVLRGDMEVLTEAIKRKRLK---GVAVALTEDDRKRTALHMAVGTKNVAMARVLMQQWRRELNRSLEDELDSLGQRRDMFIQGVLSSSTTDGRSPPGGDTAAYDIGCFEKWLSEERRRLVRVTELRCEECWRKAVTARDNMGRNPLHYAAGGTGTGETLLQT-LLTTGRADL 906
P + VL A GD+ L +A K+ G+ AL D + RTA H A + + + WR + + + ++ L +G L ++ D R +++ ++ + E R +R ELRCE WR TARD++GR PLHYA T L L TG ADL
Sbjct: 271 PSQDARAVLEACFDGDLPALKKAAKKCGFSEGLGLRCALVADQKGRTACHYAALQGRHDVLQSFGEAWRAQASEEYDRKVSDL--------RGRLVEASRDCRRR----NVEHELRGAYEFAAREADRELRQRELRCEAAWRTCCTARDDLGRTPLHYAVACVDAAHTALTVKALMTGSADL 440 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1544.1 >prot_C-linearis_contig112.1544.1 ID=prot_C-linearis_contig112.1544.1|Name=mRNA_C-linearis_contig112.1544.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1205bp MAPARSQAVSFEGAPEDPLLRAEIPKRDKAREALHDEAAEADPTEHPAEKback to top mRNA from alignment at C-linearis_contig112:381324..386989+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1544.1 ID=mRNA_C-linearis_contig112.1544.1|Name=mRNA_C-linearis_contig112.1544.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5666bp|location=Sequence derived from alignment at C-linearis_contig112:381324..386989+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:381324..386989+ >mRNA_C-linearis_contig112.1544.1 ID=mRNA_C-linearis_contig112.1544.1|Name=mRNA_C-linearis_contig112.1544.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7230bp|location=Sequence derived from alignment at C-linearis_contig112:381324..386989+ (Chordaria linearis ClinC8C monoicous)back to top |