mRNA_C-linearis_contig112.1540.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1540.1
Unique NamemRNA_C-linearis_contig112.1540.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1540.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 4.000e-70
Identity = 109/127 (85.83%), Postives = 121/127 (95.28%), Query Frame = 1 
Query:    1 MTLDDKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGINFSAKIKTIAAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRESCVKALLKAQEK 381
            MTLD+KGRRLHGR+EFFDRNV QL +H+ Q +GHHQ DGVKHGI+FS KIKTIAAQEPFADLQDRLVGLAE+TERISLERKNIMIDRAKSQVLNKLA+IKKTVI+PTQALLQDR+SCVKAL+KA+EK
Sbjct:    1 MTLDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQ-DGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
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BLAST of mRNA_C-linearis_contig112.1540.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 8.000e-42
Identity = 71/125 (56.80%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:    1 MTLDDKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGINFSAKIKTIAAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIKKTVISPTQALLQDRESCVKALLKAQ 375
            M LDDKGR + GR+EFF+RN+ +L+KH+  ++  H+A GV  G+ FS ++K +AAQEPFADLQDRLV L+E+TERI+LERK  + DRA+ QVL KL E++  VI+PT+ALL+DR+ C+++L+KA+
Sbjct:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKA-GVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS5_ECTSI4.000e-7085.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA8.000e-4256.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:353639..354998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size381
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1540.1prot_C-linearis_contig112.1540.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 353639..354998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.7508457-CDS-C-linearis_contig112:353638..3536951622927493.7508457-CDS-C-linearis_contig112:353638..353695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 353639..353695 -
1690879730.9376793-CDS-C-linearis_contig112:353638..3536951690879730.9376793-CDS-C-linearis_contig112:353638..353695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 353639..353695 -
1622927493.7653344-CDS-C-linearis_contig112:354178..3542501622927493.7653344-CDS-C-linearis_contig112:354178..354250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354179..354250 -
1690879730.946936-CDS-C-linearis_contig112:354178..3542501690879730.946936-CDS-C-linearis_contig112:354178..354250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354179..354250 -
1622927493.7750585-CDS-C-linearis_contig112:354535..3546781622927493.7750585-CDS-C-linearis_contig112:354535..354678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354536..354678 -
1690879730.954912-CDS-C-linearis_contig112:354535..3546781690879730.954912-CDS-C-linearis_contig112:354535..354678Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354536..354678 -
1622927493.7856417-CDS-C-linearis_contig112:354889..3549981622927493.7856417-CDS-C-linearis_contig112:354889..354998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354890..354998 -
1690879730.9637747-CDS-C-linearis_contig112:354889..3549981690879730.9637747-CDS-C-linearis_contig112:354889..354998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 354890..354998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1540.1

>prot_C-linearis_contig112.1540.1 ID=prot_C-linearis_contig112.1540.1|Name=mRNA_C-linearis_contig112.1540.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=127bp
MTLDDKGRRLHGRVEFFDRNVTQLTKHVQQIIGHHQADGVKHGINFSAKI
KTIAAQEPFADLQDRLVGLAELTERISLERKNIMIDRAKSQVLNKLAEIK
KTVISPTQALLQDRESCVKALLKAQEK
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mRNA from alignment at C-linearis_contig112:353639..354998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1540.1 ID=mRNA_C-linearis_contig112.1540.1|Name=mRNA_C-linearis_contig112.1540.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1360bp|location=Sequence derived from alignment at C-linearis_contig112:353639..354998- (Chordaria linearis ClinC8C monoicous)
ATGACTCTCGACGACAAAGGCAGAAGGCTTCATGGACGAGTGGAGTTCTT
TGACAGAAATGTAACACAGCTCACCAAGCACGTGCAACAAATCATCGGGC
ACCACCAGGGTGAGTGGGTCGCGCGCTTGCTCGCGCAACAGCACGATCAA
CGGTCGAAACTTCGCATATCTTTACTTTGCATGAACACGTGGCTTCGCAC
AGAAGCTCCTTGCGTTGATGGCCCTTCACGCTCCATACGTATGGATAAGG
TATGGGCATGTTAAAGAAGGGTTCAATGTTGTATTCCGCGCTAATGCGCC
CACACGCACCCTTGTGGAAGCAGATGGGGTGAAGCATGGGATCAACTTCA
GCGCCAAGATCAAGACCATCGCCGCACAGGAACCCTTCGCAGACCTCCAG
GACAGACTAGTGGGGCTAGCAGAATTAACGGAGAGGATATCTCTCGAGCG
AAAGAATATCATGGTGAGGGGGGGGGGGGGTTAAACATGACGAGAGACTA
CGTAATCGATGTATGCTTCACTGCTGTCGACTTGAGGAAAACACAAGGGC
GCGGCCATGCAAAGCGTGACCCCCCACACGTGTCTCCGAAGTAAGACTAC
AGCTGACTGCCTGCATCAGCTTCTTGTAGAACGTTGTTTAAAAGGACGCG
CAGCTCTCCATTCGTAGAGGGGCACACTGCGTTGCCCTCCTCGAACCGTG
CCGGCTGTTTGCTCTCTACATACATACTGCTGTAAACACATCCGACAGAT
TGACCGGGCGAAGAGCCAAGTGCTGAATAAGTTGGCGGAGATCAAGAAAA
CTGTCATATCTCCGACGCAGGTAAGGCCACCGCGTCCGCAACTCCTCGGG
ACAAAGAACCAGAACTTGCGCGAGGTTCTAGACTCTGGCGCCTGTAAAAA
GTCGGAACTGCTATGGGACTGATATCGACGATTTCACGAAGCAGTCAGTT
TGCTCTAGTCTATCATCTGGCGAGCCTTTTAAGCACATACCGGCACCACA
GATCCCTAGTGAGAGTTAGGGGCGCTTTGAAACAGCTCAGGAGATCTCAT
CGTGTCGTAGTATTTCGAATTCGCTTCACTACTGCAGAACAAGGCGTGAA
GCTGCACTCAATCCTACTTAGCTGTTGTTTTTTTTAGGGGAAAATAAGTA
AGTGTGGCGGACACTAATCTGTCGATTGGTTCATCGGCCTTTCTTTGCTC
GACCCGTTCGCAGAACGTGGGAAGGTGGGCTATCGTAGATGTATGCAAGC
GCGCTGTATCTAACTTGCTGTTGGATGCGTTTCCATCGCCAACCTCTTTC
CAGGCGTTGCTGCAAGACAGGGAAAGCTGTGTGAAGGCTCTGCTCAAGGC
CCAGGAGAAA
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Coding sequence (CDS) from alignment at C-linearis_contig112:353639..354998-

>mRNA_C-linearis_contig112.1540.1 ID=mRNA_C-linearis_contig112.1540.1|Name=mRNA_C-linearis_contig112.1540.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at C-linearis_contig112:353639..354998- (Chordaria linearis ClinC8C monoicous)
ATGACTCTCGACGACAAAGGCAGAAGGCTTCATGGACGAGTGGAGTTCTT
TGACAGAAATGTAACACAGCTCACCAAGCACGTGCAACAAATCATCGGGC
ACCACCAGGATGACTCTCGACGACAAAGGCAGAAGGCTTCATGGACGAGT
GGAGTTCTTTGACAGAAATGTAACACAGCTCACCAAGCACGTGCAACAAA
TCATCGGGCACCACCAGGCAGATGGGGTGAAGCATGGGATCAACTTCAGC
GCCAAGATCAAGACCATCGCCGCACAGGAACCCTTCGCAGACCTCCAGGA
CAGACTAGTGGGGCTAGCAGAATTAACGGAGAGGATATCTCTCGAGCGAA
AGAATATCATGCAGATGGGGTGAAGCATGGGATCAACTTCAGCGCCAAGA
TCAAGACCATCGCCGCACAGGAACCCTTCGCAGACCTCCAGGACAGACTA
GTGGGGCTAGCAGAATTAACGGAGAGGATATCTCTCGAGCGAAAGAATAT
CATGATTGACCGGGCGAAGAGCCAAGTGCTGAATAAGTTGGCGGAGATCA
AGAAAACTGTCATATCTCCGACGCAGATTGACCGGGCGAAGAGCCAAGTG
CTGAATAAGTTGGCGGAGATCAAGAAAACTGTCATATCTCCGACGCAGGC
GTTGCTGCAAGACAGGGAAAGCTGTGTGAAGGCTCTGCTCAAGGCCCAGG
AGAAAGCGTTGCTGCAAGACAGGGAAAGCTGTGTGAAGGCTCTGCTCAAG
GCCCAGGAGAAA
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