mRNA_C-linearis_contig112.1539.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1539.1
Unique NamemRNA_C-linearis_contig112.1539.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.100e-44
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 MNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVDAESARMNMREDIEGMNKQLHYT 231
            MNTEATVDNNFELFEAQRVEEIK+ILEEFLRCELYYHCRALEVL PALMHIGGVD ESAR NMREDIEGMNKQL YT
Sbjct:    1 MNTEATVDNNFELFEAQRVEEIKDILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77
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BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.160e-19
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    4 NTEATVDNNFELFEAQRVEEIKE------------------------------ILEEFLRCELYYHCRALEVLAPALMHIGGVDAESARMNMREDIEGMNKQLHYT 231
            NTE  VDNN ELFEAQRVE++KE                              IL+EF+RCE+YYHCRALE+LAPAL H+ GV  + A  N+R ++  +N +L+Y+
Sbjct:  153 NTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
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BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.130e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    4 NTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVDAESARMNMREDIEGMN 213
            +T+  VD+NF  FE  RV E+K +LEE LR E+ YHCRALE+L P  + +  +D + A  +M ++++ +N
Sbjct:  159 HTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 228
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BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Match: A0A4D9D8D0_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8D0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.170e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    4 NTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVDAESARMNMREDIEGMN 213
            +T+  VD+NF  FE  RV E+K +LEE LR E+ YHCRALE+L P  + +  +D + A  +M ++++ +N
Sbjct:  406 HTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 475
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BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Match: A0A8C5WE15_9ANUR (CBY1 interacting BAR domain containing 1 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5WE15_9ANUR)

HSP 1 Score: 50.8 bits (120), Expect = 1.580e-5
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   10 EATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMHIGGVDAESARMNMREDIEGMNKQLH 225
            E T+DN    FE Q+++++K+I  EFL+ E+ +H +ALEVL  A  HI  +D E       ED+E     LH
Sbjct:  178 EDTIDN----FEKQKIQDLKKIFCEFLKIEMLFHGKALEVLTSAYQHIEDIDEE-------EDLEVFRSSLH 238
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G989_ECTSI3.100e-4493.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA1.160e-1944.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TTF8_9STRA2.130e-1042.86FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A4D9D8D0_9STRA4.170e-1042.86Methionine aminopeptidase n=1 Tax=Nannochloropsis ... [more]
A0A8C5WE15_9ANUR1.580e-540.28CBY1 interacting BAR domain containing 1 n=1 Tax=L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:352478..353338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM92 protein
Ec32 orthologEc-00_011340.1
Exons3
Model size234
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1539.1prot_C-linearis_contig112.1539.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 352478..353338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927493.6926441-CDS-C-linearis_contig112:352477..3525281622927493.6926441-CDS-C-linearis_contig112:352477..352528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 352478..352528 -
1690879730.9101384-CDS-C-linearis_contig112:352477..3525281690879730.9101384-CDS-C-linearis_contig112:352477..352528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 352478..352528 -
1622927493.7050498-CDS-C-linearis_contig112:352896..3530101622927493.7050498-CDS-C-linearis_contig112:352896..353010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 352897..353010 -
1690879730.9212236-CDS-C-linearis_contig112:352896..3530101690879730.9212236-CDS-C-linearis_contig112:352896..353010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 352897..353010 -
1622927493.71902-CDS-C-linearis_contig112:353269..3533381622927493.71902-CDS-C-linearis_contig112:353269..353338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 353270..353338 -
1690879730.9294157-CDS-C-linearis_contig112:353269..3533381690879730.9294157-CDS-C-linearis_contig112:353269..353338Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 353270..353338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1539.1

>prot_C-linearis_contig112.1539.1 ID=prot_C-linearis_contig112.1539.1|Name=mRNA_C-linearis_contig112.1539.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=78bp
MNTEATVDNNFELFEAQRVEEIKEILEEFLRCELYYHCRALEVLAPALMH
IGGVDAESARMNMREDIEGMNKQLHYT*
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mRNA from alignment at C-linearis_contig112:352478..353338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1539.1 ID=mRNA_C-linearis_contig112.1539.1|Name=mRNA_C-linearis_contig112.1539.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=861bp|location=Sequence derived from alignment at C-linearis_contig112:352478..353338- (Chordaria linearis ClinC8C monoicous)
ATGAACACGGAGGCCACCGTCGACAATAACTTTGAGCTCTTCGAGGCGCA
GCGGGTAGAAGAAATCAAGGTGTGACTTTGTACGCGGCACGCAACATCAC
GAACATGAAACTATGTAAGCGTAGGACAGAAATAATGTCGCGTTGACAGA
TGTGGGCACTCTGGTCATTGTTGTCGACGCAGTGAGGTTTGGAGCTCTGC
GCCGGCATTGAGCTAGGCGAACGAACTCTGACGACTCGGAGAACGTGGTG
GAGCTGTGACATCATGCCATAAGACTCTTTACCCCCAAAGTGCGCTTACT
ACAGCACCCCGCCGATCACATGAAACAGGAAATCTTGGAGGAATTCCTTC
GCTGCGAACTGTACTACCATTGCCGCGCGCTTGAGGTGCTTGCGCCGGCA
TTGATGCACATCGGGGGGGTAGACGCCGAATCAGCGAGAATGGTAGGTGG
CTGTTGGACACCATGACATCGCAAGTTGCTTGTGCTATCGCCTCTTTTGT
GGCCAATCGACGCCATTTCCGCGACCCCCATTCGTATCGAACTTTTCGTA
GTGTTCATCTGCGGGGTCGAGAAGATTACTATAAAAGCCGCGCCTTTGGG
GCCTAGACTACAGTAAATGAAATCGCGCGGGGATTCTAGGAATGTCTCTG
CTATCGAATCACGGCGGTGACTATGGCATCTAACTCTTGCTTCCAAAGAC
GCAGATATTGTGGTCCCGCGGTGTCAAACGAAAACGTGCAGCAGAAGCCA
AGGCTCATGGGGCAGATTCCGAACGTTTCACACTAACGCTGCGGTTTTCC
GACCCCGCAGAACATGCGGGAGGACATCGAAGGCATGAACAAGCAGCTTC
ACTACACCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig112:352478..353338-

>mRNA_C-linearis_contig112.1539.1 ID=mRNA_C-linearis_contig112.1539.1|Name=mRNA_C-linearis_contig112.1539.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at C-linearis_contig112:352478..353338- (Chordaria linearis ClinC8C monoicous)
ATGAACACGGAGGCCACCGTCGACAATAACTTTGAGCTCTTCGAGGCGCA
GCGGGTAGAAGAAATCAAGATGAACACGGAGGCCACCGTCGACAATAACT
TTGAGCTCTTCGAGGCGCAGCGGGTAGAAGAAATCAAGGAAATCTTGGAG
GAATTCCTTCGCTGCGAACTGTACTACCATTGCCGCGCGCTTGAGGTGCT
TGCGCCGGCATTGATGCACATCGGGGGGGTAGACGCCGAATCAGCGAGAA
TGGAAATCTTGGAGGAATTCCTTCGCTGCGAACTGTACTACCATTGCCGC
GCGCTTGAGGTGCTTGCGCCGGCATTGATGCACATCGGGGGGGTAGACGC
CGAATCAGCGAGAATGAACATGCGGGAGGACATCGAAGGCATGAACAAGC
AGCTTCACTACACCTGAAACATGCGGGAGGACATCGAAGGCATGAACAAG
CAGCTTCACTACACCTGA
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