mRNA_C-linearis_contig112.1530.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.470e-88 Identity = 159/231 (68.83%), Postives = 177/231 (76.62%), Query Frame = 3
Query: 369 MYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLNWITPASGALLISYGTYNGLEAIF 1061
MYGTGLLMS SPCALSLLPLTI YI G+E EG E+GG + F+PSAAFA GLATVLS LGLSATYAGK+ GST GG+ G LPLV+S A+ GLN+LEL+ LPS+E G+E SLP+ RAY LGASSALVASPCCTPVLASILGF+A+SQDPALGL LLL YS GYTTPLMAAGTASG LSR+M+A GL WITP S A LISYGT+ GL AIF
Sbjct: 1 MYGTGLLMSFSPCALSLLPLTIGYIIGTEKEG---------EEGGSSNA---FLPSAAFAGGLATVLSVLGLSATYAGKLFGSTG-LGGDTGGLALPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVSAAALISYGTFTGLGAIF 218
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA) HSP 1 Score: 219 bits (558), Expect = 1.020e-62 Identity = 131/259 (50.58%), Postives = 173/259 (66.80%), Query Frame = 3
Query: 291 LFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKG--LNWITPASGALLISYGTYNGLEAIF 1061
L+ +Q WA + T+LTH++PV+ V+YG GLL SLSPCALSL+PLT++Y+ + A ++ R +A F GLAT LS LGLSAT AGK+ GS G LGA LPL AS A+ MGLN+L+LV L LPSF+ L+ + P + +A+LLGA+SAL+ASPC TPVLASILGF+A S +P LG LL +YS GY+TPL+ AG SG ++ + +G +W+TPA+GALLISYGTY+ L +F
Sbjct: 151 LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQ-------------RTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGA--GALGAA-LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATGALLISYGTYSSLATLF 392
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC) HSP 1 Score: 202 bits (515), Expect = 1.320e-57 Identity = 125/267 (46.82%), Postives = 174/267 (65.17%), Query Frame = 3
Query: 291 LFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIP---SAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGAT--VLPLVASTFAVTMGLNVLELVKLDLPSFEGG-LEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTA----KGLNWITPASGALLISYGTYNGLEAIF 1061
+F +QQ AGDI A +L+H++PV++ V+Y +GL+ SLSPCALSLLPLTI+Y+AG + + + R IP S FAAGLAT LS LGL A+ G + FG G ++P+ AS AV MGLNVL LV + P+F+GG L+ LPK + +L G +SAL+A+PC TPVL ++LG++A++ DP LG LL Y+ GY +P++AAGTASG L++L+T +GL WITP +G LL+ YGT++ L A+F
Sbjct: 46 IFDVQQTAGDIVAYQLSHLTPVSLAVLYLSGLVTSLSPCALSLLPLTIAYLAGDSSTPTDDPS------------RPPPIPLSSSLMFAAGLATALSSLGLGASLLGMGL-----FGQTSGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTGGLLVGYGTFSTLNALF 295
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A8J7FT87_9CYAN (Sulfite exporter TauE/SafE family protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7FT87_9CYAN) HSP 1 Score: 196 bits (497), Expect = 1.350e-55 Identity = 119/267 (44.57%), Postives = 176/267 (65.92%), Query Frame = 3
Query: 273 MFDA--TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIF 1061
M DA T L+QL+ +A + +T+LTH++P+++G+++G GLL SL+PC LS+LP+TI YI G EA+ + A I S FA GLAT L+ LG++A GKV G +G LP+V S A+ MGLN+LE + L LP++ GG+E++++ LP+ R+YL+G + LVASPC TPVLA++L +I+T+QDPALG VLLL Y+ GY PL+ AGT + + +++ + + WITPASGALL+ +G ++ L +F
Sbjct: 1 MLDALQTTLYQLEHFADGLVSTQLTHLTPLSVGIIFGAGLLTSLTPCMLSMLPITIGYIGGYEAKTRWQAA----------------IQSTWFALGLATTLAGLGIAAAIVGKVYGQVG-----IG---LPIVVSVIAILMGLNLLEALPLRLPAW-GGMEWISNDLPEGVRSYLIGLTFGLVASPCSTPVLATLLAWISTTQDPALGSVLLLAYATGYVAPLILAGTFTASIKKILEVRRWSGWITPASGALLVGFGVFSLLFRLF 242
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: B4VM33_9CYAN (Cytochrome C biogenesis protein transmembrane region n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VM33_9CYAN) HSP 1 Score: 192 bits (489), Expect = 1.960e-54 Identity = 117/262 (44.66%), Postives = 170/262 (64.89%), Query Frame = 3
Query: 285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMT-SLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIFG 1064
T L+QL+Q+A ++ +LTH+S ++IG+++ GLL SL+PC LS+LP+TI YI G EA+G + A + S FA GLAT L+ LG+ A G+V G +G LP++ S A+ MGLN+LE + L LPSF GG+E+++ LPK R+YL+G + LVASPC TPVLA++L ++A++QD LG VLLL+Y+AGY TPL+ AGT + + +L+ + + WITP SGALL+ +G ++ L I G
Sbjct: 7 TQLYQLEQFADNLVGNQLTHLSALSIGIIFAAGLLTSLTPCMLSMLPITIGYIGGYEAKGRLQAATQ----------------STWFALGLATTLAGLGILAASVGRVYGQVG-----IG---LPIIVSLIAIIMGLNLLEALPLQLPSF-GGMEWISPDLPKGIRSYLIGLTFGLVASPCSTPVLATLLAWVASTQDWVLGGVLLLSYTAGYVTPLIVAGTFTASIKKLLEVRQWSSWITPVSGALLVGFGVFSLLSRIPG 243
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: UPI0019F72B38 (Sulfite exporter TauE/SafE family protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019F72B38) HSP 1 Score: 188 bits (478), Expect = 8.310e-53 Identity = 118/261 (45.21%), Postives = 168/261 (64.37%), Query Frame = 3
Query: 285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYM-TSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIF 1061
T L+ L ++A + + +LTH+S V+IGV++ GLL SL+PC LS+LP+TI YI G E + + A + S FA GLAT L+ LG++AT GKV G LG LP+V S A+ MGLN+LE+V L LPS+ GG++++ T LP+ R+Y +G + LVASPC TPVLA++L +++T+QDP LG VLLL Y+AGY PL+ AGT + + +L+ + + WITPASGALLI +G ++ L +F
Sbjct: 7 TGLYHLGRFADTLVSHQLTHLSLVSIGVIFLAGLLTSLTPCMLSMLPITIGYIGGYETKTRLQAA----------------VQSTWFALGLATTLAALGIAATVVGKVYGQVG-----LG---LPIVVSAIAILMGLNLLEIVPLRLPSW-GGMDWISTDLPEGVRSYFIGLTFGLVASPCSTPVLATLLAWVSTTQDPLLGSVLLLAYTAGYVAPLILAGTFTASIKKLLELRRWSGWITPASGALLIGFGVFSLLFRLF 242
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: UPI001685ED0B (sulfite exporter TauE/SafE family protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001685ED0B) HSP 1 Score: 187 bits (475), Expect = 2.150e-52 Identity = 113/255 (44.31%), Postives = 167/255 (65.49%), Query Frame = 3
Query: 285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
T L+QLQQ A + +T+LTH+S +++G+++ GLL SL+PC LS+LP+TI YI G EA+ + AA+ S F+ GLAT L+ LG+ A AG+V G +G LP++ S A+ MGLN+LE + L LPSF GG+E+++ LP+ R+YL+G + +VASPC TPVLA++L +I+T++DP LG VLLL Y+AGY PL+ AGT + + +L+ + + WITP SGALL+ +G ++
Sbjct: 7 TQLYQLQQLADQLVSTQLTHLSWMSVGIIFIAGLLTSLTPCMLSMLPITIGYIGGYEAKSRIQAAAQ----------------STWFSLGLATTLAALGILAAIAGQVYGQVG-----IG---LPIIVSIIAIIMGLNLLEALPLQLPSF-GGMEWISKDLPEGVRSYLIGLTFGIVASPCSTPVLATLLAWISTTKDPILGSVLLLFYTAGYVAPLILAGTFTASIKKLLELRRWSAWITPVSGALLVGFGVFS 236
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A1Z4JP11_LEPBY (Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Leptolyngbya boryana NIES-2135 TaxID=1973484 RepID=A0A1Z4JP11_LEPBY) HSP 1 Score: 187 bits (474), Expect = 2.840e-52 Identity = 114/261 (43.68%), Postives = 165/261 (63.22%), Query Frame = 3
Query: 273 MFDA--TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
MFD T L++L Q+A + +++LTH++PV+IGV++ GLL SL+PC LS+LP+T+ YI G EA+ + AA+ S FA GLAT L+ LG++AT G+V G T LP+V S A+ MGLN+LE + L +P+ GG ++++ LP R+YLLG LVASPC TPVLA+IL +I+T++DP LG LLL Y+AGY PL+ AGT + + +L+ + + WITP SG LL+ +G ++
Sbjct: 1 MFDTFQTQLYELSQFADRLVSSQLTHITPVSIGVIFAAGLLTSLTPCTLSMLPITVGYIGGYEAKSRVQAAAQ----------------STWFALGLATTLAGLGIAATLFGRVYGQVGTG--------LPIVISVVAIIMGLNLLEALPLQMPTI-GGTDWISEELPTGVRSYLLGVMFGLVASPCSTPVLATILAWISTTKDPILGGSLLLCYTAGYVAPLIIAGTFTAAIKKLLELRRWSGWITPTSGVLLVGFGVFS 236
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A0S3U077_9CYAN (Cytochrome C biogenesis protein, transmembrane region n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3U077_9CYAN) HSP 1 Score: 186 bits (473), Expect = 3.980e-52 Identity = 114/255 (44.71%), Postives = 162/255 (63.53%), Query Frame = 3
Query: 285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
T L++L Q+A + +++L H++PV+IGV++ GLL SL+PC LS+LP+TI YI G EA+ + AA+ S F+ GLAT L+ LG+ AT GKV G T LP+V S A+ MGLN+LE + +PS GG E++++ LP R+YLLG + LVASPC TPVLA+IL +IA++ DP LG LLL Y+AGY PL+ AGT + + +L+ + + WITPASGALL+ +G ++
Sbjct: 7 TQLYELSQFADRLVSSQLAHITPVSIGVIFAAGLLTSLTPCTLSMLPITIGYIGGYEAKSRLQAAAQ----------------STWFSLGLATTLAGLGIGATLLGKVYGQVGTG--------LPIVVSVVAILMGLNLLEALPFAMPSI-GGTEWISNELPAGVRSYLLGVTFGLVASPCSTPVLATILAWIASTGDPILGGSLLLCYTAGYVAPLILAGTFTAAIKKLLELRRWSAWITPASGALLVGFGVFS 236
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A7C3VSL6_9CYAN (Cytochrome c biogenesis protein CcdA n=1 Tax=Planktothricoides sp. SpSt-374 TaxID=2282167 RepID=A0A7C3VSL6_9CYAN) HSP 1 Score: 186 bits (473), Expect = 4.230e-52 Identity = 114/254 (44.88%), Postives = 162/254 (63.78%), Query Frame = 3
Query: 285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
T L+QLQQ+A I + +LTH++ V+IG+++ GLL SL+PC LS+LP+TI YI GSE + + A + S FA GLAT L+ LG++A + GKV G LG LP+V S A+ MGLN+LE + L LPSF+G +L AR+YLLG + LVASPC TPVLA++L ++AT++D LG LLL+Y+AGY PL+ AGT +G + +L+ + + WI+PASG LL+ +G ++
Sbjct: 7 TTLYQLQQFANTIVSGQLTHITIVSIGLIFIAGLLTSLTPCMLSMLPITIGYIGGSETKSRTQAA----------------LQSTWFALGLATTLAGLGIAAAFLGKVYGQIG-----LG---LPIVVSVVAIIMGLNLLEALPLQLPSFDGMQFLPANLSGGARSYLLGLTFGLVASPCSTPVLATLLAWVATTKDLILGAALLLSYTAGYVAPLILAGTFTGTIKKLLEWRRWSAWISPASGVLLVGFGVFS 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1530.1 >prot_C-linearis_contig112.1530.1 ID=prot_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=344bp MRTFVAGTVAALATLRADSFSVRAGVPQSSLQVTVHHSFCSTASGSSVAAback to top mRNA from alignment at C-linearis_contig112:278395..281447+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1530.1 ID=mRNA_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at C-linearis_contig112:278395..281447+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:278395..281447+ >mRNA_C-linearis_contig112.1530.1 ID=mRNA_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at C-linearis_contig112:278395..281447+ (Chordaria linearis ClinC8C monoicous)back to top |