mRNA_C-linearis_contig112.1530.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1530.1
Unique NamemRNA_C-linearis_contig112.1530.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.470e-88
Identity = 159/231 (68.83%), Postives = 177/231 (76.62%), Query Frame = 3
Query:  369 MYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLNWITPASGALLISYGTYNGLEAIF 1061
            MYGTGLLMS SPCALSLLPLTI YI G+E EG         E+GG  +    F+PSAAFA GLATVLS LGLSATYAGK+ GST   GG+ G   LPLV+S  A+  GLN+LEL+   LPS+E G+E   SLP+  RAY LGASSALVASPCCTPVLASILGF+A+SQDPALGL LLL YS GYTTPLMAAGTASG LSR+M+A GL WITP S A LISYGT+ GL AIF
Sbjct:    1 MYGTGLLMSFSPCALSLLPLTIGYIIGTEKEG---------EEGGSSNA---FLPSAAFAGGLATVLSVLGLSATYAGKLFGSTG-LGGDTGGLALPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVSAAALISYGTFTGLGAIF 218          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.020e-62
Identity = 131/259 (50.58%), Postives = 173/259 (66.80%), Query Frame = 3
Query:  291 LFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKG--LNWITPASGALLISYGTYNGLEAIF 1061
            L+ +Q WA  +  T+LTH++PV+  V+YG GLL SLSPCALSL+PLT++Y+     + A ++             R     +A F  GLAT LS LGLSAT AGK+ GS     G LGA  LPL AS  A+ MGLN+L+LV L LPSF+  L+ +   P + +A+LLGA+SAL+ASPC TPVLASILGF+A S +P LG  LL +YS GY+TPL+ AG  SG ++  +  +G   +W+TPA+GALLISYGTY+ L  +F
Sbjct:  151 LYDIQIWAKQLVDTQLTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQ-------------RTLLFRAATFTVGLATSLSVLGLSATLAGKLFGSAGA--GALGAA-LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATGALLISYGTYSSLATLF 392          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC)

HSP 1 Score: 202 bits (515), Expect = 1.320e-57
Identity = 125/267 (46.82%), Postives = 174/267 (65.17%), Query Frame = 3
Query:  291 LFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIP---SAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGAT--VLPLVASTFAVTMGLNVLELVKLDLPSFEGG-LEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTA----KGLNWITPASGALLISYGTYNGLEAIF 1061
            +F +QQ AGDI A +L+H++PV++ V+Y +GL+ SLSPCALSLLPLTI+Y+AG  +    + +            R   IP   S  FAAGLAT LS LGL A+  G  +     FG   G    ++P+ AS  AV MGLNVL LV +  P+F+GG L+    LPK  + +L G +SAL+A+PC TPVL ++LG++A++ DP LG  LL  Y+ GY +P++AAGTASG L++L+T     +GL WITP +G LL+ YGT++ L A+F
Sbjct:   46 IFDVQQTAGDIVAYQLSHLTPVSLAVLYLSGLVTSLSPCALSLLPLTIAYLAGDSSTPTDDPS------------RPPPIPLSSSLMFAAGLATALSSLGLGASLLGMGL-----FGQTSGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTGGLLVGYGTFSTLNALF 295          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A8J7FT87_9CYAN (Sulfite exporter TauE/SafE family protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7FT87_9CYAN)

HSP 1 Score: 196 bits (497), Expect = 1.350e-55
Identity = 119/267 (44.57%), Postives = 176/267 (65.92%), Query Frame = 3
Query:  273 MFDA--TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIF 1061
            M DA  T L+QL+ +A  + +T+LTH++P+++G+++G GLL SL+PC LS+LP+TI YI G EA+   + A                I S  FA GLAT L+ LG++A   GKV G        +G   LP+V S  A+ MGLN+LE + L LP++ GG+E++++ LP+  R+YL+G +  LVASPC TPVLA++L +I+T+QDPALG VLLL Y+ GY  PL+ AGT +  + +++  +  + WITPASGALL+ +G ++ L  +F
Sbjct:    1 MLDALQTTLYQLEHFADGLVSTQLTHLTPLSVGIIFGAGLLTSLTPCMLSMLPITIGYIGGYEAKTRWQAA----------------IQSTWFALGLATTLAGLGIAAAIVGKVYGQVG-----IG---LPIVVSVIAILMGLNLLEALPLRLPAW-GGMEWISNDLPEGVRSYLIGLTFGLVASPCSTPVLATLLAWISTTQDPALGSVLLLAYATGYVAPLILAGTFTASIKKILEVRRWSGWITPASGALLVGFGVFSLLFRLF 242          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: B4VM33_9CYAN (Cytochrome C biogenesis protein transmembrane region n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VM33_9CYAN)

HSP 1 Score: 192 bits (489), Expect = 1.960e-54
Identity = 117/262 (44.66%), Postives = 170/262 (64.89%), Query Frame = 3
Query:  285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMT-SLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIFG 1064
            T L+QL+Q+A ++   +LTH+S ++IG+++  GLL SL+PC LS+LP+TI YI G EA+G  + A +                S  FA GLAT L+ LG+ A   G+V G        +G   LP++ S  A+ MGLN+LE + L LPSF GG+E+++  LPK  R+YL+G +  LVASPC TPVLA++L ++A++QD  LG VLLL+Y+AGY TPL+ AGT +  + +L+  +  + WITP SGALL+ +G ++ L  I G
Sbjct:    7 TQLYQLEQFADNLVGNQLTHLSALSIGIIFAAGLLTSLTPCMLSMLPITIGYIGGYEAKGRLQAATQ----------------STWFALGLATTLAGLGILAASVGRVYGQVG-----IG---LPIIVSLIAIIMGLNLLEALPLQLPSF-GGMEWISPDLPKGIRSYLIGLTFGLVASPCSTPVLATLLAWVASTQDWVLGGVLLLSYTAGYVTPLIVAGTFTASIKKLLEVRQWSSWITPVSGALLVGFGVFSLLSRIPG 243          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: UPI0019F72B38 (Sulfite exporter TauE/SafE family protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019F72B38)

HSP 1 Score: 188 bits (478), Expect = 8.310e-53
Identity = 118/261 (45.21%), Postives = 168/261 (64.37%), Query Frame = 3
Query:  285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYM-TSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLEAIF 1061
            T L+ L ++A  + + +LTH+S V+IGV++  GLL SL+PC LS+LP+TI YI G E +   + A                + S  FA GLAT L+ LG++AT  GKV G        LG   LP+V S  A+ MGLN+LE+V L LPS+ GG++++ T LP+  R+Y +G +  LVASPC TPVLA++L +++T+QDP LG VLLL Y+AGY  PL+ AGT +  + +L+  +  + WITPASGALLI +G ++ L  +F
Sbjct:    7 TGLYHLGRFADTLVSHQLTHLSLVSIGVIFLAGLLTSLTPCMLSMLPITIGYIGGYETKTRLQAA----------------VQSTWFALGLATTLAALGIAATVVGKVYGQVG-----LG---LPIVVSAIAILMGLNLLEIVPLRLPSW-GGMDWISTDLPEGVRSYFIGLTFGLVASPCSTPVLATLLAWVSTTQDPLLGSVLLLAYTAGYVAPLILAGTFTASIKKLLELRRWSGWITPASGALLIGFGVFSLLFRLF 242          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: UPI001685ED0B (sulfite exporter TauE/SafE family protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001685ED0B)

HSP 1 Score: 187 bits (475), Expect = 2.150e-52
Identity = 113/255 (44.31%), Postives = 167/255 (65.49%), Query Frame = 3
Query:  285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
            T L+QLQQ A  + +T+LTH+S +++G+++  GLL SL+PC LS+LP+TI YI G EA+   + AA+                S  F+ GLAT L+ LG+ A  AG+V G        +G   LP++ S  A+ MGLN+LE + L LPSF GG+E+++  LP+  R+YL+G +  +VASPC TPVLA++L +I+T++DP LG VLLL Y+AGY  PL+ AGT +  + +L+  +  + WITP SGALL+ +G ++
Sbjct:    7 TQLYQLQQLADQLVSTQLTHLSWMSVGIIFIAGLLTSLTPCMLSMLPITIGYIGGYEAKSRIQAAAQ----------------STWFSLGLATTLAALGILAAIAGQVYGQVG-----IG---LPIIVSIIAIIMGLNLLEALPLQLPSF-GGMEWISKDLPEGVRSYLIGLTFGIVASPCSTPVLATLLAWISTTKDPILGSVLLLFYTAGYVAPLILAGTFTASIKKLLELRRWSAWITPVSGALLVGFGVFS 236          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A1Z4JP11_LEPBY (Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Leptolyngbya boryana NIES-2135 TaxID=1973484 RepID=A0A1Z4JP11_LEPBY)

HSP 1 Score: 187 bits (474), Expect = 2.840e-52
Identity = 114/261 (43.68%), Postives = 165/261 (63.22%), Query Frame = 3
Query:  273 MFDA--TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
            MFD   T L++L Q+A  + +++LTH++PV+IGV++  GLL SL+PC LS+LP+T+ YI G EA+   + AA+                S  FA GLAT L+ LG++AT  G+V G   T         LP+V S  A+ MGLN+LE + L +P+  GG ++++  LP   R+YLLG    LVASPC TPVLA+IL +I+T++DP LG  LLL Y+AGY  PL+ AGT +  + +L+  +  + WITP SG LL+ +G ++
Sbjct:    1 MFDTFQTQLYELSQFADRLVSSQLTHITPVSIGVIFAAGLLTSLTPCTLSMLPITVGYIGGYEAKSRVQAAAQ----------------STWFALGLATTLAGLGIAATLFGRVYGQVGTG--------LPIVISVVAIIMGLNLLEALPLQMPTI-GGTDWISEELPTGVRSYLLGVMFGLVASPCSTPVLATILAWISTTKDPILGGSLLLCYTAGYVAPLIIAGTFTAAIKKLLELRRWSGWITPTSGVLLVGFGVFS 236          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A0S3U077_9CYAN (Cytochrome C biogenesis protein, transmembrane region n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3U077_9CYAN)

HSP 1 Score: 186 bits (473), Expect = 3.980e-52
Identity = 114/255 (44.71%), Postives = 162/255 (63.53%), Query Frame = 3
Query:  285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
            T L++L Q+A  + +++L H++PV+IGV++  GLL SL+PC LS+LP+TI YI G EA+   + AA+                S  F+ GLAT L+ LG+ AT  GKV G   T         LP+V S  A+ MGLN+LE +   +PS  GG E++++ LP   R+YLLG +  LVASPC TPVLA+IL +IA++ DP LG  LLL Y+AGY  PL+ AGT +  + +L+  +  + WITPASGALL+ +G ++
Sbjct:    7 TQLYELSQFADRLVSSQLAHITPVSIGVIFAAGLLTSLTPCTLSMLPITIGYIGGYEAKSRLQAAAQ----------------STWFSLGLATTLAGLGIGATLLGKVYGQVGTG--------LPIVVSVVAILMGLNLLEALPFAMPSI-GGTEWISNELPAGVRSYLLGVTFGLVASPCSTPVLATILAWIASTGDPILGGSLLLCYTAGYVAPLILAGTFTAAIKKLLELRRWSAWITPASGALLVGFGVFS 236          
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Match: A0A7C3VSL6_9CYAN (Cytochrome c biogenesis protein CcdA n=1 Tax=Planktothricoides sp. SpSt-374 TaxID=2282167 RepID=A0A7C3VSL6_9CYAN)

HSP 1 Score: 186 bits (473), Expect = 4.230e-52
Identity = 114/254 (44.88%), Postives = 162/254 (63.78%), Query Frame = 3
Query:  285 TDLFQLQQWAGDISATELTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAEGREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGGELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYN 1043
            T L+QLQQ+A  I + +LTH++ V+IG+++  GLL SL+PC LS+LP+TI YI GSE +   + A                + S  FA GLAT L+ LG++A + GKV G        LG   LP+V S  A+ MGLN+LE + L LPSF+G      +L   AR+YLLG +  LVASPC TPVLA++L ++AT++D  LG  LLL+Y+AGY  PL+ AGT +G + +L+  +  + WI+PASG LL+ +G ++
Sbjct:    7 TTLYQLQQFANTIVSGQLTHITIVSIGLIFIAGLLTSLTPCMLSMLPITIGYIGGSETKSRTQAA----------------LQSTWFALGLATTLAGLGIAAAFLGKVYGQIG-----LG---LPIVVSVVAIIMGLNLLEALPLQLPSFDGMQFLPANLSGGARSYLLGLTFGLVASPCSTPVLATLLAWVATTKDLILGAALLLSYTAGYVAPLILAGTFTGTIKKLLEWRRWSAWISPASGVLLVGFGVFS 236          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY77_9STRA1.470e-8868.83Cytochrome c biogenesis protein, thiol reduction t... [more]
A0A4D9CLR8_9STRA1.020e-6250.58DsbD domain-containing protein n=2 Tax=Monodopsida... [more]
A0A0G4H6S3_VITBC1.320e-5746.82DsbD domain-containing protein n=1 Tax=Vitrella br... [more]
A0A8J7FT87_9CYAN1.350e-5544.57Sulfite exporter TauE/SafE family protein n=2 Tax=... [more]
B4VM33_9CYAN1.960e-5444.66Cytochrome C biogenesis protein transmembrane regi... [more]
UPI0019F72B388.310e-5345.21Sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
UPI001685ED0B2.150e-5244.31sulfite exporter TauE/SafE family protein n=2 Tax=... [more]
A0A1Z4JP11_LEPBY2.840e-5243.68Cytochrome c biogenesis protein, transmembrane reg... [more]
A0A0S3U077_9CYAN3.980e-5244.71Cytochrome C biogenesis protein, transmembrane reg... [more]
A0A7C3VSL6_9CYAN4.230e-5244.88Cytochrome c biogenesis protein CcdA n=1 Tax=Plank... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:278395..281447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score198.0
Seed ortholog evalue7.3e-48
Seed eggNOG ortholog1487953.JMKF01000066_gene3833
Preferred nameccdA
KEGG koko:K06196
KEGG TC5.A.1.2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.PFAM cytochrome c biogenesis protein, transmembrane region
EggNOG OGs1G0FI@1117,1H7YU@1150,COG0785@1,COG0785@2
COG Functional cat.O
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons4
Model size1556
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1530.1prot_C-linearis_contig112.1530.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 278430..280958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927492.3902986-UTR-C-linearis_contig112:278394..2784291622927492.3902986-UTR-C-linearis_contig112:278394..278429Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 278395..278429 +
1690879729.9742022-UTR-C-linearis_contig112:278394..2784291690879729.9742022-UTR-C-linearis_contig112:278394..278429Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 278395..278429 +
1622927492.453856-UTR-C-linearis_contig112:280958..2814471622927492.453856-UTR-C-linearis_contig112:280958..281447Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 280959..281447 +
1690879730.0303228-UTR-C-linearis_contig112:280958..2814471690879730.0303228-UTR-C-linearis_contig112:280958..281447Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 280959..281447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927492.4011977-CDS-C-linearis_contig112:278429..2787291622927492.4011977-CDS-C-linearis_contig112:278429..278729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 278430..278729 +
1690879729.9875994-CDS-C-linearis_contig112:278429..2787291690879729.9875994-CDS-C-linearis_contig112:278429..278729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 278430..278729 +
1622927492.4112659-CDS-C-linearis_contig112:279038..2792551622927492.4112659-CDS-C-linearis_contig112:279038..279255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 279039..279255 +
1690879729.9963224-CDS-C-linearis_contig112:279038..2792551690879729.9963224-CDS-C-linearis_contig112:279038..279255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 279039..279255 +
1622927492.4248705-CDS-C-linearis_contig112:279974..2802141622927492.4248705-CDS-C-linearis_contig112:279974..280214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 279975..280214 +
1690879730.005627-CDS-C-linearis_contig112:279974..2802141690879730.005627-CDS-C-linearis_contig112:279974..280214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 279975..280214 +
1622927492.4387767-CDS-C-linearis_contig112:280683..2809581622927492.4387767-CDS-C-linearis_contig112:280683..280958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 280684..280958 +
1690879730.017139-CDS-C-linearis_contig112:280683..2809581690879730.017139-CDS-C-linearis_contig112:280683..280958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 280684..280958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1530.1

>prot_C-linearis_contig112.1530.1 ID=prot_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=344bp
MRTFVAGTVAALATLRADSFSVRAGVPQSSLQVTVHHSFCSTASGSSVAA
SSSSRPWARNIKRPRAGRSIGKGAAGSLSMFDATDLFQLQQWAGDISATE
LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEAAE
GREKGGFESLRGGFIPSAAFAAGLATVLSFLGLSATYAGKVMGSTSTFGG
ELGATVLPLVASTFAVTMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAY
LLGASSALVASPCCTPVLASILGFIATSQDPALGLVLLLTYSAGYTTPLM
AAGTASGVLSRLMTAKGLNWITPASGALLISYGTYNGLEAIFG*
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mRNA from alignment at C-linearis_contig112:278395..281447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1530.1 ID=mRNA_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at C-linearis_contig112:278395..281447+ (Chordaria linearis ClinC8C monoicous)
CCCCGTCTCCGTGCGCCTTGTACATTCTTATCACGATGAGGACCTTCGTA GCCGGCACCGTCGCTGCATTAGCGACTTTGCGTGCAGATTCTTTCAGCGT CCGCGCTGGAGTGCCTCAGTCTTCCCTTCAGGTGACTGTACATCACAGTT TTTGCTCGACAGCATCAGGCAGCTCAGTAGCTGCATCCAGCTCATCAAGA CCATGGGCACGAAACATCAAGCGGCCAAGGGCGGGCAGGTCGATAGGGAA GGGTGCCGCCGGTTCGCTGAGCATGTTCGATGCGACCGATCTGTTTCAAC TCCAGCAATGGGCTGGCGATATCTCGGCCACAGAGGTAAAAGCCCGCTCT CTGTCCGTCGGTTGGTATGATTATCCGCTCGTTGCAGCAGCAGCAGCGTT TGTGCTTGAGGTCTCCTGGTTGCTTGACGGTGATCCGCCAGGCGGCGTTG ATTTTGCGCCCCGCGCCGTAGGTCAGTAGAAGGTTACTTCGATTCAGTTC CATCACCTCGAAAGTCTTTCCAGCTAGAAGCGTGCAGGTGCTCGTGTTGC GTCCATGCCAATTTTCCATCTTGCGGTTGAAGTTTTTTTTCTGTCCTCTC GGCCGCTGCTCCCATCTCTCTCTCGCCTGGCTGGCCATTCACAGCTGACT CACGTGAGTCCTGTCACCATAGGGGTCATGTACGGGACGGGGCTGCTCAT GTCGCTCAGTCCGTGCGCGCTGTCGCTGCTGCCGCTGACGATCTCTTACA TCGCGGGGTCGGAGGCGGAGGGGGCGGCAGAGGAGGCCGCAGAAGGCAGA GAAAAGGGAGGGTTTGAGTCTCTCAGGGGGGGCTTCATTCCGTCCGCGGC GTTCGCTGCAGGTGATCGGTGACGAGCTTGCCTGCCCTCGCGGATAGAGT GTGTATACATGGTCGTTCTTTTGGACCTACCTCTGTTGTTGTACGGCGAG CTGATGCTTTGTGGCGGTGTGTGAGGTTTTCGTTTGCTGACTTGGGTTCG TTTGACGGATTGTTCTCGCGTGTTCGACCTGCTGAAAGTTAAAGTTATGT CGCTCTCTCGCCGACGGGCGGTACAGAGCCACAGAGGCAGCTTTGCTGAT GGCGGGCGGCTGCTGGCGATATCTAGTTTGCCTGAGTTTACTTTCTTTGG TAGGGCGTGCTTAGCGTATGTTTCGCTCGCGGACTCTGTAGTACAAGCTA GTCTACACCCAAGCTTGACGTGGGCAATTCGCGTACGGACATCGGCGAGT TCGTCGTGCTGCGCACCACGGCATGTTTGATAAACCTTCAGCTTTGAGCC ACTGACAGAATTATCGTGTGTGTGTGTGTGCTTACGAGCATAGGTACGTG TGAATGCTAAATCATCGCAGCCAGCCTCGTTGGGGCCATCACAACCCGAA GTGTCCATACAGCAGTTTGTGTTTTTTCGCTGATACATTTATGTGCCGCA AACCCGAGACAGGTAGATGAAGAAAGCATCATCTCCTTGATGAAGGGTTA GCTTAAATCTCCACACACACTAACCACCCCAGCCCGCCCTCTCCTCCTGC TTGATGTGTTTTTTTGGCGGAACGCGACAGGGCTGGCAACCGTGCTCTCG TTCCTCGGCCTATCCGCGACGTACGCTGGCAAGGTGATGGGCAGCACCAG CACCTTCGGCGGCGAGCTGGGCGCGACCGTGTTGCCGCTGGTGGCGTCCA CTTTCGCGGTCACGATGGGCCTCAACGTGCTGGAGCTTGTGAAGCTCGAC CTCCCGTCGTTTGAGGGGGGCCTTGAGTACATGACAAGTCTTCCCAAGAA TGCCCGCGCATACTTGCTAGGTGAGAGTCCCTTTTCGGAAGACCGCGGTG CGGCCGGAGCTTGCTTTGATTGGTTCGGGGTGGGGCAAACGTGAACAGGC AGTGACGGCGCTTTATTTTTCCTGATTGGTCAGGTATGACCAGGCGCATG CTTTTTCTCCCGTGAGGTTGGAATGCGGGCACGTCACCACCGAAGCATCA CGGCGGCCCAACCCCCCTTCTATCCACAACAGCACGAGGTCAAGGCAGCC GCCCACTTGAGAACAGACACAGCAAGTGGCCTCCTGTGGCCTGCTGTTTG CATGAGCACCCTATTAAGAGCAAAACCTCCCCGCCCTGCACACGCGCCTC CACGCCCCCCCCCTGCTTGTACTCGAGCCCCTCAAACACCCTACCACACG TTCATTTCTCACCGCAAAAACAAGTACGGAGTCATAAAAAGTCCCTCCGC CGGCCACACTCGTGCGTGCCCCCCCCCCCCCACACGCAGGCGCATCGTCC GCTCTAGTGGCGTCGCCGTGCTGCACCCCAGTGCTCGCCTCCATCCTGGG CTTCATCGCGACCTCGCAGGACCCGGCGCTCGGGCTCGTCCTGCTCCTCA CGTACTCGGCCGGGTACACGACGCCTCTCATGGCGGCCGGCACCGCCAGC GGGGTGCTGTCGCGGCTCATGACGGCCAAGGGGCTGAACTGGATCACGCC GGCGAGCGGGGCGCTGCTCATCTCGTACGGGACGTACAACGGGCTGGAGG CGATCTTTGGCTAGGCGTGACGCGCGCGATTCTTCTCTGCCTCTCTTTTG TCCGAGCGCGCGCTCTTGATGTACAGACTGGTAGCAGGGTTTTATGGCTC AGCATCGTTGTAGGTCTGCTGTTTTGCTCCCATTCAGTCGGAGGTGGAGG ACACGGGTGGGGTCGCACACGGTTCGAGGTGGTCTAGTGTGGGCGCTAGA GTGTGTTGTGCTCCGGACAAAGGCTATTTAGAATTTCGTGGTTGTTTGGG AGAGGAGCGGGGTGGTTCTAGAGGGTTGGGGGTGAATGCAAGTGTATTTA TCGGTCACCGGATATATAGACGTGTATGTTTATACTTGTATTTGCCTCTA TTTGGTATTGAGGAATAGATCCGTCTTTTTTCAGTTGGCGGAGGCATGCG CGGTAGATCTCATCCCCGAGACGCGAGATGAAGCCTCGTGTGTAACTAAC TCATGGCGGGAGGACTATTTTTTCGCGGGTATGATATCGTGGTTTTATTT TGG
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Coding sequence (CDS) from alignment at C-linearis_contig112:278395..281447+

>mRNA_C-linearis_contig112.1530.1 ID=mRNA_C-linearis_contig112.1530.1|Name=mRNA_C-linearis_contig112.1530.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at C-linearis_contig112:278395..281447+ (Chordaria linearis ClinC8C monoicous)
ATGAGGACCTTCGTAGCCGGCACCGTCGCTGCATTAGCGACTTTGCGTGC
AGATTCTTTCAGCGTCCGCGCTGGAGTGCCTCAGTCTTCCCTTCAGGTGA
CTGTACATCACAGTTTTTGCTCGACAGCATCAGGCAGCTCAGTAGCTGCA
TCCAGCTCATCAAGACCATGGGCACGAAACATCAAGCGGCCAAGGGCGGG
CAGGTCGATAGGGAAGGGTGCCGCCGGTTCGCTGAGCATGTTCGATGCGA
CCGATCTGTTTCAACTCCAGCAATGGGCTGGCGATATCTCGGCCACAGAG
ATGAGGACCTTCGTAGCCGGCACCGTCGCTGCATTAGCGACTTTGCGTGC
AGATTCTTTCAGCGTCCGCGCTGGAGTGCCTCAGTCTTCCCTTCAGGTGA
CTGTACATCACAGTTTTTGCTCGACAGCATCAGGCAGCTCAGTAGCTGCA
TCCAGCTCATCAAGACCATGGGCACGAAACATCAAGCGGCCAAGGGCGGG
CAGGTCGATAGGGAAGGGTGCCGCCGGTTCGCTGAGCATGTTCGATGCGA
CCGATCTGTTTCAACTCCAGCAATGGGCTGGCGATATCTCGGCCACAGAG
CTGACTCACGTGAGTCCTGTCACCATAGGGGTCATGTACGGGACGGGGCT
GCTCATGTCGCTCAGTCCGTGCGCGCTGTCGCTGCTGCCGCTGACGATCT
CTTACATCGCGGGGTCGGAGGCGGAGGGGGCGGCAGAGGAGGCCGCAGAA
GGCAGAGAAAAGGGAGGGTTTGAGTCTCTCAGGGGGGGCTTCATTCCGTC
CGCGGCGTTCGCTGCAGCTGACTCACGTGAGTCCTGTCACCATAGGGGTC
ATGTACGGGACGGGGCTGCTCATGTCGCTCAGTCCGTGCGCGCTGTCGCT
GCTGCCGCTGACGATCTCTTACATCGCGGGGTCGGAGGCGGAGGGGGCGG
CAGAGGAGGCCGCAGAAGGCAGAGAAAAGGGAGGGTTTGAGTCTCTCAGG
GGGGGCTTCATTCCGTCCGCGGCGTTCGCTGCAGGGCTGGCAACCGTGCT
CTCGTTCCTCGGCCTATCCGCGACGTACGCTGGCAAGGTGATGGGCAGCA
CCAGCACCTTCGGCGGCGAGCTGGGCGCGACCGTGTTGCCGCTGGTGGCG
TCCACTTTCGCGGTCACGATGGGCCTCAACGTGCTGGAGCTTGTGAAGCT
CGACCTCCCGTCGTTTGAGGGGGGCCTTGAGTACATGACAAGTCTTCCCA
AGAATGCCCGCGCATACTTGCTAGGGCTGGCAACCGTGCTCTCGTTCCTC
GGCCTATCCGCGACGTACGCTGGCAAGGTGATGGGCAGCACCAGCACCTT
CGGCGGCGAGCTGGGCGCGACCGTGTTGCCGCTGGTGGCGTCCACTTTCG
CGGTCACGATGGGCCTCAACGTGCTGGAGCTTGTGAAGCTCGACCTCCCG
TCGTTTGAGGGGGGCCTTGAGTACATGACAAGTCTTCCCAAGAATGCCCG
CGCATACTTGCTAGGCGCATCGTCCGCTCTAGTGGCGTCGCCGTGCTGCA
CCCCAGTGCTCGCCTCCATCCTGGGCTTCATCGCGACCTCGCAGGACCCG
GCGCTCGGGCTCGTCCTGCTCCTCACGTACTCGGCCGGGTACACGACGCC
TCTCATGGCGGCCGGCACCGCCAGCGGGGTGCTGTCGCGGCTCATGACGG
CCAAGGGGCTGAACTGGATCACGCCGGCGAGCGGGGCGCTGCTCATCTCG
TACGGGACGTACAACGGGCTGGAGGCGATCTTTGGCTAGGCGCATCGTCC
GCTCTAGTGGCGTCGCCGTGCTGCACCCCAGTGCTCGCCTCCATCCTGGG
CTTCATCGCGACCTCGCAGGACCCGGCGCTCGGGCTCGTCCTGCTCCTCA
CGTACTCGGCCGGGTACACGACGCCTCTCATGGCGGCCGGCACCGCCAGC
GGGGTGCTGTCGCGGCTCATGACGGCCAAGGGGCTGAACTGGATCACGCC
GGCGAGCGGGGCGCTGCTCATCTCGTACGGGACGTACAACGGGCTGGAGG
CGATCTTTGGCTAG
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