mRNA_C-linearis_contig112.1528.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1528.1
Unique NamemRNA_C-linearis_contig112.1528.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:262621..263456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size836
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1528.1prot_C-linearis_contig112.1528.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 262678..263127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.382992-UTR-C-linearis_contig112:262620..2626771622927486.382992-UTR-C-linearis_contig112:262620..262677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 262621..262677 +
1690879728.4200644-UTR-C-linearis_contig112:262620..2626771690879728.4200644-UTR-C-linearis_contig112:262620..262677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 262621..262677 +
1622927486.40596-UTR-C-linearis_contig112:263127..2634561622927486.40596-UTR-C-linearis_contig112:263127..263456Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 263128..263456 +
1690879728.437615-UTR-C-linearis_contig112:263127..2634561690879728.437615-UTR-C-linearis_contig112:263127..263456Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 263128..263456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.3954694-CDS-C-linearis_contig112:262677..2631271622927486.3954694-CDS-C-linearis_contig112:262677..263127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 262678..263127 +
1690879728.4287567-CDS-C-linearis_contig112:262677..2631271690879728.4287567-CDS-C-linearis_contig112:262677..263127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 262678..263127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1528.1

>prot_C-linearis_contig112.1528.1 ID=prot_C-linearis_contig112.1528.1|Name=mRNA_C-linearis_contig112.1528.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=150bp
MCPLRGTTGRGPLYCPWLGCQRNRASPKQQTLTFLPHRQKRPINGRAFQP
TCIRKRMVRVLLFSSPGQKPRTYGTPRAVTTTWYTRRTTRRDPPNRRRSP
PTLSSQEPRADLAAPFFTGRQASRVPGDLAIFSSKRNKTAQNRLFSKIW*
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mRNA from alignment at C-linearis_contig112:262621..263456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1528.1 ID=mRNA_C-linearis_contig112.1528.1|Name=mRNA_C-linearis_contig112.1528.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=836bp|location=Sequence derived from alignment at C-linearis_contig112:262621..263456+ (Chordaria linearis ClinC8C monoicous)
ACTCCGCTGCGTACCGCTTAGGGCAAGGGGGCCCTTGAACGCGTTCGCCC
ACCCCAGATGTGCCCACTCCGGGGCACGACAGGTCGTGGACCACTGTACT
GCCCTTGGCTTGGGTGTCAACGAAACAGAGCCAGTCCAAAACAGCAAACC
TTAACCTTTTTACCTCACCGCCAAAAACGGCCAATTAACGGCCGCGCCTT
CCAGCCTACTTGTATTAGAAAACGGATGGTTCGCGTGTTGTTGTTCTCCT
CCCCAGGACAAAAGCCCAGAACGTACGGTACGCCGAGAGCGGTCACAACG
ACGTGGTACACCAGGCGCACAACACGACGGGACCCCCCAAACCGCCGCCG
ATCACCGCCGACCCTGTCGTCACAGGAGCCTAGAGCAGACCTTGCGGCGC
CTTTTTTTACTGGGCGGCAAGCCAGCCGCGTCCCGGGCGACCTTGCTATC
TTTTCTTCAAAGCGCAACAAAACAGCTCAAAATCGGCTCTTCTCTAAAAT
ATGGTAGTATTTACATTGCCGAAGAACGGGGTCAGCCGTAGTAGGATATA
TACTGGGATCCCCTTCCTCACGTCTACCGTCTGTGAAGATGTCCAAGCTG
TTCAACACACCCGGGACCCCACTCATTGCACGTCCTTGACCAATTTCAAA
CGAATAGCGGGTGGTGTTCCCACCACAAAGCGCGCCTTGTGTCTCGTTGG
ATCTTCTCCGACGACAAGCAGACAAAGCGCATGCACGGCACGAGTGCTGA
CTTCGACCCTCTCCGGTAGGCGATACGGCTACAGTATACAGCTGCATCCG
CGTGCCCTCTATCGATCTTAACTTATCTGCCTACCC
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Coding sequence (CDS) from alignment at C-linearis_contig112:262621..263456+

>mRNA_C-linearis_contig112.1528.1 ID=mRNA_C-linearis_contig112.1528.1|Name=mRNA_C-linearis_contig112.1528.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at C-linearis_contig112:262621..263456+ (Chordaria linearis ClinC8C monoicous)
ATGTGCCCACTCCGGGGCACGACAGGTCGTGGACCACTGTACTGCCCTTG
GCTTGGGTGTCAACGAAACAGAGCCAGTCCAAAACAGCAAACCTTAACCT
TTTTACCTCACCGCCAAAAACGGCCAATTAACGGCCGCGCCTTCCAGCCT
ACTTGTATTAGAAAACGGATGGTTCGCGTGTTGTTGTTCTCCTCCCCAGG
ACAAAAGCCCAGAACGTACGGTACGCCGAGAGCGGTCACAACGACGTGGT
ACACCAGGCGCACAACACGACGGGACCCCCCAAACCGCCGCCGATCACCG
CCGACCCTGTCGTCACAGGAGCCTAGAGCAGACCTTGCGGCGCCTTTTTT
TACTGGGCGGCAAGCCAGCCGCGTCCCGGGCGACCTTGCTATCTTTTCTT
CAAAGCGCAACAAAACAGCTCAAAATCGGCTCTTCTCTAAAATATGGTAG
ATGTGCCCACTCCGGGGCACGACAGGTCGTGGACCACTGTACTGCCCTTG
GCTTGGGTGTCAACGAAACAGAGCCAGTCCAAAACAGCAAACCTTAACCT
TTTTACCTCACCGCCAAAAACGGCCAATTAACGGCCGCGCCTTCCAGCCT
ACTTGTATTAGAAAACGGATGGTTCGCGTGTTGTTGTTCTCCTCCCCAGG
ACAAAAGCCCAGAACGTACGGTACGCCGAGAGCGGTCACAACGACGTGGT
ACACCAGGCGCACAACACGACGGGACCCCCCAAACCGCCGCCGATCACCG
CCGACCCTGTCGTCACAGGAGCCTAGAGCAGACCTTGCGGCGCCTTTTTT
TACTGGGCGGCAAGCCAGCCGCGTCCCGGGCGACCTTGCTATCTTTTCTT
CAAAGCGCAACAAAACAGCTCAAAATCGGCTCTTCTCTAAAATATGGTAG
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