mRNA_C-linearis_contig112.1508.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1508.1
Unique NamemRNA_C-linearis_contig112.1508.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-19
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   16 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 174
            SG++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 9.070e-19
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   13 ASGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 174
            +SGV+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   66 SSGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 79.0 bits (193), Expect = 5.160e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   16 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 168
            SGV+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 5.850e-16
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 168
            SGV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
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BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 51
[Close]
BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1E1Y9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1Y9_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 8.780e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
[Close]
BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Match: R1C158_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C158_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   33 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPS 173
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS
Sbjct:  104 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPS 150
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA1.640e-1971.70Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT9.070e-1970.37Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS5.160e-1874.51Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC5.850e-1668.63Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
R1EX34_EMIHU1.330e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU1.360e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU1.850e-1170.21Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU1.850e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1E1Y9_EMIHU8.780e-1170.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1C158_EMIHU1.050e-1070.21Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:29268..29444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog35128.Thaps30335
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2F8R5@1,2T9VT@2759,2XH3Y@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927486.4375882-CDS-C-linearis_contig112:29267..294441622927486.4375882-CDS-C-linearis_contig112:29267..29444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 29268..29444 -
1690879728.446529-CDS-C-linearis_contig112:29267..294441690879728.446529-CDS-C-linearis_contig112:29267..29444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 29268..29444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1508.1prot_C-linearis_contig112.1508.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 29268..29444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1508.1

>prot_C-linearis_contig112.1508.1 ID=prot_C-linearis_contig112.1508.1|Name=mRNA_C-linearis_contig112.1508.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=59bp
PRGGASGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHR
CGSQDIRR*
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mRNA from alignment at C-linearis_contig112:29268..29444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1508.1 ID=mRNA_C-linearis_contig112.1508.1|Name=mRNA_C-linearis_contig112.1508.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at C-linearis_contig112:29268..29444- (Chordaria linearis ClinC8C monoicous)
CCGAGAGGTGGGGCGAGTGGTGTCAACAGACACTCCGACAAGCATGCTCC
CAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTCACT
GGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGT
TGTGGGAGCCAAGACATCCGTCGCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig112:29268..29444-

>mRNA_C-linearis_contig112.1508.1 ID=mRNA_C-linearis_contig112.1508.1|Name=mRNA_C-linearis_contig112.1508.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at C-linearis_contig112:29268..29444- (Chordaria linearis ClinC8C monoicous)
CCGAGAGGTGGGGCGAGTGGTGTCAACAGACACTCCGACAAGCATGCTCC
CAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTGATGATTCACT
GGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGTTCTTCATCGT
TGTGGGAGCCAAGACATCCGTCGCTGACCGAGAGGTGGGGCGAGTGGTGT
CAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAG
ATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCAAGACGT
ATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCG
CTGA
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